Lineage for Protein: automated matches

  1. Root: SCOPe 2.08
  2. 2923792Class d: Alpha and beta proteins (a+b) [53931] (396 folds)
  3. 2949054Fold d.58: Ferredoxin-like [54861] (62 superfamilies)
    alpha+beta sandwich with antiparallel beta-sheet; (beta-alpha-beta)x2
  4. 2951860Superfamily d.58.7: RNA-binding domain, RBD, aka RNA recognition motif (RRM) [54928] (6 families) (S)
  5. 2951861Family d.58.7.1: Canonical RBD [54929] (70 proteins)
    Pfam PF00076
    Pfam PF13893
  6. 2952339Protein automated matches [190332] (5 species)
    not a true protein

Species:

  1. 2952340Fruit fly (Drosophila melanogaster) [TaxId:7227] [311207] (3 PDB entries)
    1. Domain for 2fjj:
    2. Domains for 6f4i:
      1. 2952343Domain d6f4ia_: 6f4i A: [353672]
        Other proteins in same PDB: d6f4id2
        automated match to d2fjja_
      2. 2952344Domain d6f4ib_: 6f4i B: [353664]
        Other proteins in same PDB: d6f4id2
        automated match to d2fjja_
      3. 2952345Domain d6f4ic_: 6f4i C: [353671]
        Other proteins in same PDB: d6f4id2
        automated match to d2fjja_
      4. 2952346Domain d6f4id1: 6f4i D:1-84 [353708]
        Other proteins in same PDB: d6f4id2
        automated match to d2fjja_
      5. 2952347Domain d6f4ie_: 6f4i E: [353675]
        Other proteins in same PDB: d6f4id2
        automated match to d2fjja_
      6. 2952348Domain d6f4if_: 6f4i F: [353685]
        Other proteins in same PDB: d6f4id2
        automated match to d2fjja_
    3. Domains for 6f4j:
      1. 2952341Domain d6f4jc_: 6f4j C: [353703]
        Other proteins in same PDB: d6f4ja_, d6f4jb_
        automated match to d2fjja_
        complexed with 15p, so4
      2. 2952342Domain d6f4jd_: 6f4j D: [353687]
        Other proteins in same PDB: d6f4ja_, d6f4jb_
        automated match to d2fjja_
        complexed with 15p, so4
  2. 2952350Human (Homo sapiens) [TaxId:9606] [187155] (29 PDB entries)
    1. Domains for 1nrc:
      1. 2952413Domain d1nrca_: 1nrc A: [302778]
        automated match to d1dz5a_
      2. 2952414Domain d1nrcb_: 1nrc B: [302779]
        automated match to d1dz5a_
    2. Domain for 1wtb:
    3. Domain for 1x0f:
    4. Domains for 2ek1:
      1. 2952366Domain d2ek1a1: 2ek1 A:875-949 [164107]
        Other proteins in same PDB: d2ek1a2, d2ek1b2, d2ek1c2, d2ek1d2, d2ek1e2, d2ek1f2, d2ek1g2, d2ek1h2
        automated match to d2cqpa1
      2. 2952367Domain d2ek1b1: 2ek1 B:875-949 [164108]
        Other proteins in same PDB: d2ek1a2, d2ek1b2, d2ek1c2, d2ek1d2, d2ek1e2, d2ek1f2, d2ek1g2, d2ek1h2
        automated match to d2cqpa1
      3. 2952368Domain d2ek1c1: 2ek1 C:875-949 [164109]
        Other proteins in same PDB: d2ek1a2, d2ek1b2, d2ek1c2, d2ek1d2, d2ek1e2, d2ek1f2, d2ek1g2, d2ek1h2
        automated match to d2cqpa1
      4. 2952369Domain d2ek1d1: 2ek1 D:874-949 [164110]
        Other proteins in same PDB: d2ek1a2, d2ek1b2, d2ek1c2, d2ek1d2, d2ek1e2, d2ek1f2, d2ek1g2, d2ek1h2
        automated match to d2cqpa1
      5. 2952370Domain d2ek1e1: 2ek1 E:875-949 [164111]
        Other proteins in same PDB: d2ek1a2, d2ek1b2, d2ek1c2, d2ek1d2, d2ek1e2, d2ek1f2, d2ek1g2, d2ek1h2
        automated match to d2cqpa1
      6. 2952371Domain d2ek1f1: 2ek1 F:875-949 [164112]
        Other proteins in same PDB: d2ek1a2, d2ek1b2, d2ek1c2, d2ek1d2, d2ek1e2, d2ek1f2, d2ek1g2, d2ek1h2
        automated match to d2cqpa1
      7. 2952372Domain d2ek1g1: 2ek1 G:876-949 [164113]
        Other proteins in same PDB: d2ek1a2, d2ek1b2, d2ek1c2, d2ek1d2, d2ek1e2, d2ek1f2, d2ek1g2, d2ek1h2
        automated match to d2cqpa1
      8. 2952373Domain d2ek1h1: 2ek1 H:875-949 [164114]
        Other proteins in same PDB: d2ek1a2, d2ek1b2, d2ek1c2, d2ek1d2, d2ek1e2, d2ek1f2, d2ek1g2, d2ek1h2
        automated match to d2cqpa1
    5. Domains for 2ek6:
      1. 2952397Domain d2ek6a1: 2ek6 A:13-87 [164121]
        Other proteins in same PDB: d2ek6a2, d2ek6b2, d2ek6c2, d2ek6d2
        automated match to d2cqpa1
      2. 2952398Domain d2ek6b1: 2ek6 B:13-87 [164122]
        Other proteins in same PDB: d2ek6a2, d2ek6b2, d2ek6c2, d2ek6d2
        automated match to d2cqpa1
      3. 2952399Domain d2ek6c1: 2ek6 C:13-87 [164123]
        Other proteins in same PDB: d2ek6a2, d2ek6b2, d2ek6c2, d2ek6d2
        automated match to d2cqpa1
      4. 2952400Domain d2ek6d1: 2ek6 D:13-87 [164124]
        Other proteins in same PDB: d2ek6a2, d2ek6b2, d2ek6c2, d2ek6d2
        automated match to d2cqpa1
    6. Domain for 2j0s:
    7. Domain for 2kxn:
    8. Domain for 2kyx:
    9. Domains for 2lyv:
      1. 2952424Domain d2lyva1: 2lyv A:2-98 [243047]
        Other proteins in same PDB: d2lyva3
        automated match to d1u1qa1
      2. 2952425Domain d2lyva2: 2lyv A:99-196 [243048]
        Other proteins in same PDB: d2lyva3
        automated match to d1u1qa2
    10. Domain for 2mhn:
    11. Domains for 2mju:
      1. 2952429Domain d2mjua1: 2mju A:325-444 [264407]
        automated match to d1qm9a1
      2. 2952430Domain d2mjua2: 2mju A:445-531 [264408]
        automated match to d2adca2
    12. Domains for 3h2v:
      1. 2952401Domain d3h2ve1: 3h2v E:59-130 [177160]
        Other proteins in same PDB: d3h2va_, d3h2vb_, d3h2vc_, d3h2vd_, d3h2ve2, d3h2vf2, d3h2vg2, d3h2vh2
        automated match to d1wi6a1
        protein/RNA complex
      2. 2952402Domain d3h2vf1: 3h2v F:59-130 [177161]
        Other proteins in same PDB: d3h2va_, d3h2vb_, d3h2vc_, d3h2vd_, d3h2ve2, d3h2vf2, d3h2vg2, d3h2vh2
        automated match to d1wi6a1
        protein/RNA complex
      3. 2952403Domain d3h2vg1: 3h2v G:59-130 [177162]
        Other proteins in same PDB: d3h2va_, d3h2vb_, d3h2vc_, d3h2vd_, d3h2ve2, d3h2vf2, d3h2vg2, d3h2vh2
        automated match to d1wi6a1
        protein/RNA complex
      4. 2952404Domain d3h2vh1: 3h2v H:59-130 [177163]
        Other proteins in same PDB: d3h2va_, d3h2vb_, d3h2vc_, d3h2vd_, d3h2ve2, d3h2vf2, d3h2vg2, d3h2vh2
        automated match to d1wi6a1
        protein/RNA complex
    13. Domains for 3k0j:
      1. 2952405Domain d3k0ja_: 3k0j A: [247088]
        automated match to d1dz5a_
        protein/RNA complex; complexed with mg, tpp
      2. 2952406Domain d3k0jb_: 3k0j B: [247089]
        automated match to d1dz5a_
        protein/RNA complex; complexed with mg, tpp
      3. 2952407Domain d3k0jc_: 3k0j C: [247090]
        automated match to d1dz5a_
        protein/RNA complex; complexed with mg, tpp
      4. 2952408Domain d3k0jd_: 3k0j D: [247091]
        automated match to d1dz5a_
        protein/RNA complex; complexed with mg, tpp
    14. Domains for 3lpy:
      1. 2952376Domain d3lpya1: 3lpy A:5-82 [180503]
        Other proteins in same PDB: d3lpya2, d3lpyb2
        automated match to d2cqba1
        complexed with epe, so4
      2. 2952377Domain d3lpyb1: 3lpy B:5-82 [180504]
        Other proteins in same PDB: d3lpya2, d3lpyb2
        automated match to d2cqba1
        complexed with epe, so4
    15. Domains for 3lqv:
      1. 2952395Domain d3lqva_: 3lqv A: [180519]
        automated match to d2f9da1
        complexed with ade
      2. 2952396Domain d3lqvb_: 3lqv B: [180520]
        automated match to d2f9da1
        complexed with ade
    16. Domains for 3mdf:
      1. 2952356Domain d3mdfa_: 3mdf A: [181019]
        automated match to d2cqba1
      2. 2952357Domain d3mdfb_: 3mdf B: [181020]
        automated match to d2cqba1
    17. Domains for 3s7r:
      1. 2952393Domain d3s7ra_: 3s7r A: [200592]
        automated match to d3s7rb_
        complexed with unl
      2. 2952394Domain d3s7rb_: 3s7r B: [196248]
        automated match to d1hd0a_
        complexed with unl
    18. Domain for 3ulh:
    19. Domains for 3zzy:
      1. 2952354Domain d3zzya_: 3zzy A: [218621]
        automated match to d1sjra_
        protein/RNA complex
      2. 2952355Domain d3zzyb_: 3zzy B: [218622]
        automated match to d1sjra_
        protein/RNA complex
    20. Domains for 3zzz:
      1. 2952352Domain d3zzza_: 3zzz A: [218623]
        automated match to d1sjra_
        protein/RNA complex; complexed with iod
      2. 2952353Domain d3zzzb_: 3zzz B: [218624]
        automated match to d1sjra_
        protein/RNA complex; complexed with iod
    21. Domains for 4cko:
      1. 2952358Domain d4ckoa2: 4cko A:337-444 [307128]
        Other proteins in same PDB: d4ckoa3, d4ckob4, d4ckoc4, d4ckod4, d4ckoe4, d4ckof4, d4ckog4, d4ckoh4
        automated match to d1qm9a1
        complexed with cl, zn
      2. 2952359Domain d4ckob3: 4cko B:337-444 [307130]
        Other proteins in same PDB: d4ckoa3, d4ckob4, d4ckoc4, d4ckod4, d4ckoe4, d4ckof4, d4ckog4, d4ckoh4
        automated match to d1qm9a1
        complexed with cl, zn
      3. 2952360Domain d4ckoc3: 4cko C:337-444 [307132]
        Other proteins in same PDB: d4ckoa3, d4ckob4, d4ckoc4, d4ckod4, d4ckoe4, d4ckof4, d4ckog4, d4ckoh4
        automated match to d1qm9a1
        complexed with cl, zn
      4. 2952361Domain d4ckod3: 4cko D:337-444 [307134]
        Other proteins in same PDB: d4ckoa3, d4ckob4, d4ckoc4, d4ckod4, d4ckoe4, d4ckof4, d4ckog4, d4ckoh4
        automated match to d1qm9a1
        complexed with cl, zn
      5. 2952362Domain d4ckoe3: 4cko E:337-444 [307136]
        Other proteins in same PDB: d4ckoa3, d4ckob4, d4ckoc4, d4ckod4, d4ckoe4, d4ckof4, d4ckog4, d4ckoh4
        automated match to d1qm9a1
        complexed with cl, zn
      6. 2952363Domain d4ckof3: 4cko F:337-444 [307138]
        Other proteins in same PDB: d4ckoa3, d4ckob4, d4ckoc4, d4ckod4, d4ckoe4, d4ckof4, d4ckog4, d4ckoh4
        automated match to d1qm9a1
        complexed with cl, zn
      7. 2952364Domain d4ckog3: 4cko G:337-444 [307140]
        Other proteins in same PDB: d4ckoa3, d4ckob4, d4ckoc4, d4ckod4, d4ckoe4, d4ckof4, d4ckog4, d4ckoh4
        automated match to d1qm9a1
        complexed with cl, zn
      8. 2952365Domain d4ckoh3: 4cko H:337-444 [307142]
        Other proteins in same PDB: d4ckoa3, d4ckob4, d4ckoc4, d4ckod4, d4ckoe4, d4ckof4, d4ckog4, d4ckoh4
        automated match to d1qm9a1
        complexed with cl, zn
    22. Domains for 4cq1:
      1. 2952378Domain d4cq1a1: 4cq1 A:337-444 [236982]
        Other proteins in same PDB: d4cq1a2, d4cq1b2, d4cq1c2, d4cq1d2, d4cq1e2, d4cq1f2, d4cq1g2, d4cq1h2
        automated match to d4ckob1
        complexed with cl, zn
      2. 2952379Domain d4cq1b1: 4cq1 B:336-444 [236983]
        Other proteins in same PDB: d4cq1a2, d4cq1b2, d4cq1c2, d4cq1d2, d4cq1e2, d4cq1f2, d4cq1g2, d4cq1h2
        automated match to d4ckob1
        complexed with cl, zn
      3. 2952380Domain d4cq1c1: 4cq1 C:337-444 [236985]
        Other proteins in same PDB: d4cq1a2, d4cq1b2, d4cq1c2, d4cq1d2, d4cq1e2, d4cq1f2, d4cq1g2, d4cq1h2
        automated match to d4ckob1
        complexed with cl, zn
      4. 2952381Domain d4cq1d1: 4cq1 D:337-444 [236988]
        Other proteins in same PDB: d4cq1a2, d4cq1b2, d4cq1c2, d4cq1d2, d4cq1e2, d4cq1f2, d4cq1g2, d4cq1h2
        automated match to d4ckob1
        complexed with cl, zn
      5. 2952382Domain d4cq1e1: 4cq1 E:337-444 [236984]
        Other proteins in same PDB: d4cq1a2, d4cq1b2, d4cq1c2, d4cq1d2, d4cq1e2, d4cq1f2, d4cq1g2, d4cq1h2
        automated match to d4ckob1
        complexed with cl, zn
      6. 2952383Domain d4cq1f1: 4cq1 F:337-444 [236986]
        Other proteins in same PDB: d4cq1a2, d4cq1b2, d4cq1c2, d4cq1d2, d4cq1e2, d4cq1f2, d4cq1g2, d4cq1h2
        automated match to d4ckob1
        complexed with cl, zn
      7. 2952384Domain d4cq1g1: 4cq1 G:337-444 [236987]
        Other proteins in same PDB: d4cq1a2, d4cq1b2, d4cq1c2, d4cq1d2, d4cq1e2, d4cq1f2, d4cq1g2, d4cq1h2
        automated match to d4ckob1
        complexed with cl, zn
      8. 2952385Domain d4cq1h1: 4cq1 H:337-444 [236989]
        Other proteins in same PDB: d4cq1a2, d4cq1b2, d4cq1c2, d4cq1d2, d4cq1e2, d4cq1f2, d4cq1g2, d4cq1h2
        automated match to d4ckob1
        complexed with cl, zn
    23. Domain for 4iuf:
    24. Domains for 4lir:
      1. 2952410Domain d4lira_: 4lir A: [253601]
        automated match to d1wwha1
      2. 2952411Domain d4lirb_: 4lir B: [253602]
        automated match to d1wwha1
    25. Domain for 4w90:
    26. Domain for 4yud:
    27. Domains for 4zka:
      1. 2952387Domain d4zkaa_: 4zka A: [319169]
        automated match to d2erra1
        complexed with mes, pg4, so4
      2. 2952388Domain d4zkab_: 4zka B: [319173]
        automated match to d2erra1
        complexed with mes, pg4, so4
      3. 2952389Domain d4zkac_: 4zka C: [319154]
        automated match to d2erra1
        complexed with mes, pg4, so4
      4. 2952390Domain d4zkad_: 4zka D: [319184]
        automated match to d2erra1
        complexed with mes, pg4, so4
      5. 2952391Domain d4zkae_: 4zka E: [319155]
        automated match to d2erra1
        complexed with mes, pg4, so4
      6. 2952392Domain d4zkaf_: 4zka F: [319190]
        automated match to d2erra1
        complexed with mes, pg4, so4
    28. Domains for 5im0:
      1. 2952374Domain d5im0a_: 5im0 A: [320430]
        Other proteins in same PDB: d5im0b2, d5im0b3
        automated match to d3s7ra_
      2. 2952375Domain d5im0b1: 5im0 B:77-156 [320575]
        Other proteins in same PDB: d5im0b2, d5im0b3
        automated match to d3s7ra_
    29. Domains for 5oo6:
      1. 2952415Domain d5oo6b_: 5oo6 B: [341619]
        automated match to d1h2ux_
        complexed with mgt
      2. 2952416Domain d5oo6e_: 5oo6 E: [341755]
        automated match to d1h2ux_
        complexed with mgt
      3. 2952417Domain d5oo6h_: 5oo6 H: [341632]
        automated match to d1h2ux_
        complexed with mgt
      4. 2952418Domain d5oo6k_: 5oo6 K: [341640]
        automated match to d1h2ux_
        complexed with mgt
      5. 2952419Domain d5oo6n_: 5oo6 N: [341625]
        automated match to d1h2ux_
        complexed with mgt
      6. 2952420Domain d5oo6q_: 5oo6 Q: [341648]
        automated match to d1h2ux_
        complexed with mgt
      7. 2952421Domain d5oo6t_: 5oo6 T: [341641]
        automated match to d1h2ux_
        complexed with mgt
      8. 2952422Domain d5oo6w_: 5oo6 W: [341634]
        automated match to d1h2ux_
        complexed with mgt
  3. 2952433Mouse (Mus musculus) [TaxId:10090] [188825] (3 PDB entries)
    1. Domain for 2rok:
    2. Domain for 3d2w:
    3. Domains for 3v4m:
      1. 2952435Domain d3v4ma1: 3v4m A:372-475 [201157]
        Other proteins in same PDB: d3v4ma2
        automated match to d3v4mb_
        complexed with cl, na
      2. 2952436Domain d3v4mb_: 3v4m B: [195127]
        Other proteins in same PDB: d3v4ma2
        automated match to d1o0pa_
        complexed with cl, na
  4. 2952438Nematode (Caenorhabditis elegans) [TaxId:6239] [258944] (3 PDB entries)
    1. Domain for 2mgz:
    2. Domain for 2ru3:
    3. Domain for 4ch0:
  5. 2952442Norway rat (Rattus norvegicus) [TaxId:10116] [272203] (1 PDB entry)

More info for Protein automated matches from d.58.7.1: Canonical RBD

Timeline for Protein automated matches from d.58.7.1: Canonical RBD: