SCOPe 2.08: Protein: automated matches

Lineage for Protein: automated matches

Root: SCOPe 2.08
Class d: Alpha and beta proteins (a+b) [53931] (396 folds)
Fold d.58: Ferredoxin-like [54861] (62 superfamilies)
alpha+beta sandwich with antiparallel beta-sheet; (beta-alpha-beta)x2
Superfamily d.58.7: RNA-binding domain, RBD, aka RNA recognition motif (RRM) [54928] (6 families)
Family d.58.7.1: Canonical RBD [54929] (70 proteins)
Pfam PF00076
Pfam PF13893
Protein automated matches [190332] (5 species)
not a true protein

Species:

Fruit fly (Drosophila melanogaster) [TaxId:7227] [311207] (4 PDB entries)
1. Domain for 2fjj:
  - Domain d2fjja_: 2fjj A: [303835]
    automated match to d2k3ka1
2. Domains for 6f4i:
  1. Domain d6f4ia_: 6f4i A: [353672]
    Other proteins in same PDB: d6f4id2
    automated match to d2fjja_
  2. Domain d6f4ib_: 6f4i B: [353664]
    Other proteins in same PDB: d6f4id2
    automated match to d2fjja_
  3. Domain d6f4ic_: 6f4i C: [353671]
    Other proteins in same PDB: d6f4id2
    automated match to d2fjja_
  4. Domain d6f4id1: 6f4i D:1-84 [353708]
    Other proteins in same PDB: d6f4id2
    automated match to d2fjja_
  5. Domain d6f4ie_: 6f4i E: [353675]
    Other proteins in same PDB: d6f4id2
    automated match to d2fjja_
  6. Domain d6f4if_: 6f4i F: [353685]
    Other proteins in same PDB: d6f4id2
    automated match to d2fjja_
3. Domains for 6f4j:
  1. Domain d6f4jc_: 6f4j C: [353703]
    Other proteins in same PDB: d6f4ja_, d6f4jb_
    automated match to d2fjja_
    complexed with 15p, so4
  2. Domain d6f4jd_: 6f4j D: [353687]
    Other proteins in same PDB: d6f4ja_, d6f4jb_
    automated match to d2fjja_
    complexed with 15p, so4
4. Domain for 7aaf:
  - Domain d7aafa1: 7aaf A:242-319 [420281]
    Other proteins in same PDB: d7aafa2
    automated match to d2u2fa_
Human (Homo sapiens) [TaxId:9606] [187155] (29 PDB entries)
1. Domains for 1nrc:
  1. Domain d1nrca_: 1nrc A: [302778]
    automated match to d1dz5a_
  2. Domain d1nrcb_: 1nrc B: [302779]
    automated match to d1dz5a_
2. Domain for 1wtb:
  - Domain d1wtba_: 1wtb A: [121256]
    automated match to d1x0fa1
    protein/DNA complex; protein/RNA complex
3. Domain for 1x0f:
  - Domain d1x0fa_: 1x0f A: [121546]
    automated match to d1x0fa1
    protein/DNA complex; protein/RNA complex
4. Domains for 2ek1:
  1. Domain d2ek1a1: 2ek1 A:875-949 [164107]
    Other proteins in same PDB: d2ek1a2, d2ek1b2, d2ek1c2, d2ek1d2, d2ek1e2, d2ek1f2, d2ek1g2, d2ek1h2
    automated match to d2cqpa1
  2. Domain d2ek1b1: 2ek1 B:875-949 [164108]
    Other proteins in same PDB: d2ek1a2, d2ek1b2, d2ek1c2, d2ek1d2, d2ek1e2, d2ek1f2, d2ek1g2, d2ek1h2
    automated match to d2cqpa1
  3. Domain d2ek1c1: 2ek1 C:875-949 [164109]
    Other proteins in same PDB: d2ek1a2, d2ek1b2, d2ek1c2, d2ek1d2, d2ek1e2, d2ek1f2, d2ek1g2, d2ek1h2
    automated match to d2cqpa1
  4. Domain d2ek1d1: 2ek1 D:874-949 [164110]
    Other proteins in same PDB: d2ek1a2, d2ek1b2, d2ek1c2, d2ek1d2, d2ek1e2, d2ek1f2, d2ek1g2, d2ek1h2
    automated match to d2cqpa1
  5. Domain d2ek1e1: 2ek1 E:875-949 [164111]
    Other proteins in same PDB: d2ek1a2, d2ek1b2, d2ek1c2, d2ek1d2, d2ek1e2, d2ek1f2, d2ek1g2, d2ek1h2
    automated match to d2cqpa1
  6. Domain d2ek1f1: 2ek1 F:875-949 [164112]
    Other proteins in same PDB: d2ek1a2, d2ek1b2, d2ek1c2, d2ek1d2, d2ek1e2, d2ek1f2, d2ek1g2, d2ek1h2
    automated match to d2cqpa1
  7. Domain d2ek1g1: 2ek1 G:876-949 [164113]
    Other proteins in same PDB: d2ek1a2, d2ek1b2, d2ek1c2, d2ek1d2, d2ek1e2, d2ek1f2, d2ek1g2, d2ek1h2
    automated match to d2cqpa1
  8. Domain d2ek1h1: 2ek1 H:875-949 [164114]
    Other proteins in same PDB: d2ek1a2, d2ek1b2, d2ek1c2, d2ek1d2, d2ek1e2, d2ek1f2, d2ek1g2, d2ek1h2
    automated match to d2cqpa1
5. Domains for 2ek6:
  1. Domain d2ek6a1: 2ek6 A:13-87 [164121]
    Other proteins in same PDB: d2ek6a2, d2ek6b2, d2ek6c2, d2ek6d2
    automated match to d2cqpa1
  2. Domain d2ek6b1: 2ek6 B:13-87 [164122]
    Other proteins in same PDB: d2ek6a2, d2ek6b2, d2ek6c2, d2ek6d2
    automated match to d2cqpa1
  3. Domain d2ek6c1: 2ek6 C:13-87 [164123]
    Other proteins in same PDB: d2ek6a2, d2ek6b2, d2ek6c2, d2ek6d2
    automated match to d2cqpa1
  4. Domain d2ek6d1: 2ek6 D:13-87 [164124]
    Other proteins in same PDB: d2ek6a2, d2ek6b2, d2ek6c2, d2ek6d2
    automated match to d2cqpa1
6. Domain for 2j0s:
  - Domain d2j0sd_: 2j0s D: [137916]
    Other proteins in same PDB: d2j0sa1, d2j0sa2, d2j0sc_
    automated match to d1p27b_
    protein/DNA complex; protein/RNA complex; complexed with anp, mg
7. Domain for 2kxn:
  - Domain d2kxnb_: 2kxn B: [242691]
    automated match to d2cqca1
    protein/RNA complex
8. Domain for 2kyx:
  - Domain d2kyxa1: 2kyx A:3-83 [242705]
    Other proteins in same PDB: d2kyxa2
    automated match to d2cqba1
9. Domains for 2lyv:
  1. Domain d2lyva1: 2lyv A:2-98 [243047]
    Other proteins in same PDB: d2lyva3
    automated match to d1u1qa1
  2. Domain d2lyva2: 2lyv A:99-196 [243048]
    Other proteins in same PDB: d2lyva3
    automated match to d1u1qa2
10. Domain for 2mhn:
  - Domain d2mhna1: 2mhn A:4-94 [243186]
    Other proteins in same PDB: d2mhna2
    automated match to d2cq4a1
11. Domains for 2mju:
  1. Domain d2mjua1: 2mju A:325-444 [264407]
    automated match to d1qm9a1
  2. Domain d2mjua2: 2mju A:445-531 [264408]
    automated match to d2adca2
12. Domains for 3h2v:
  1. Domain d3h2ve1: 3h2v E:59-130 [177160]
    Other proteins in same PDB: d3h2va_, d3h2vb_, d3h2vc_, d3h2vd_, d3h2ve2, d3h2vf2, d3h2vg2, d3h2vh2
    automated match to d1wi6a1
    protein/RNA complex
  2. Domain d3h2vf1: 3h2v F:59-130 [177161]
    Other proteins in same PDB: d3h2va_, d3h2vb_, d3h2vc_, d3h2vd_, d3h2ve2, d3h2vf2, d3h2vg2, d3h2vh2
    automated match to d1wi6a1
    protein/RNA complex
  3. Domain d3h2vg1: 3h2v G:59-130 [177162]
    Other proteins in same PDB: d3h2va_, d3h2vb_, d3h2vc_, d3h2vd_, d3h2ve2, d3h2vf2, d3h2vg2, d3h2vh2
    automated match to d1wi6a1
    protein/RNA complex
  4. Domain d3h2vh1: 3h2v H:59-130 [177163]
    Other proteins in same PDB: d3h2va_, d3h2vb_, d3h2vc_, d3h2vd_, d3h2ve2, d3h2vf2, d3h2vg2, d3h2vh2
    automated match to d1wi6a1
    protein/RNA complex
13. Domains for 3k0j:
  1. Domain d3k0ja_: 3k0j A: [247088]
    automated match to d1dz5a_
    protein/RNA complex; complexed with mg, tpp
  2. Domain d3k0jb_: 3k0j B: [247089]
    automated match to d1dz5a_
    protein/RNA complex; complexed with mg, tpp
  3. Domain d3k0jc_: 3k0j C: [247090]
    automated match to d1dz5a_
    protein/RNA complex; complexed with mg, tpp
  4. Domain d3k0jd_: 3k0j D: [247091]
    automated match to d1dz5a_
    protein/RNA complex; complexed with mg, tpp
14. Domains for 3lpy:
  1. Domain d3lpya1: 3lpy A:5-82 [180503]
    Other proteins in same PDB: d3lpya2, d3lpyb2
    automated match to d2cqba1
    complexed with epe, so4
  2. Domain d3lpyb1: 3lpy B:5-82 [180504]
    Other proteins in same PDB: d3lpya2, d3lpyb2
    automated match to d2cqba1
    complexed with epe, so4
15. Domains for 3lqv:
  1. Domain d3lqva_: 3lqv A: [180519]
    automated match to d2f9da1
    complexed with ade
  2. Domain d3lqvb_: 3lqv B: [180520]
    automated match to d2f9da1
    complexed with ade
16. Domains for 3mdf:
  1. Domain d3mdfa_: 3mdf A: [181019]
    automated match to d2cqba1
  2. Domain d3mdfb_: 3mdf B: [181020]
    automated match to d2cqba1
17. Domains for 3s7r:
  1. Domain d3s7ra_: 3s7r A: [200592]
    automated match to d3s7rb_
    complexed with unl
  2. Domain d3s7rb_: 3s7r B: [196248]
    automated match to d1hd0a_
    complexed with unl
18. Domain for 3ulh:
  - Domain d3ulha_: 3ulh A: [250238]
    automated match to d1no8a_
    protein/RNA complex; complexed with po4
19. Domains for 3zzy:
  1. Domain d3zzya_: 3zzy A: [218621]
    automated match to d1sjra_
    protein/RNA complex
  2. Domain d3zzyb_: 3zzy B: [218622]
    automated match to d1sjra_
    protein/RNA complex
20. Domains for 3zzz:
  1. Domain d3zzza_: 3zzz A: [218623]
    automated match to d1sjra_
    protein/RNA complex; complexed with iod
  2. Domain d3zzzb_: 3zzz B: [218624]
    automated match to d1sjra_
    protein/RNA complex; complexed with iod
21. Domains for 4cko:
  1. Domain d4ckoa2: 4cko A:337-444 [307128]
    Other proteins in same PDB: d4ckoa3, d4ckob4, d4ckoc4, d4ckod4, d4ckoe4, d4ckof4, d4ckog4, d4ckoh4
    automated match to d1qm9a1
    complexed with cl, zn
  2. Domain d4ckob3: 4cko B:337-444 [307130]
    Other proteins in same PDB: d4ckoa3, d4ckob4, d4ckoc4, d4ckod4, d4ckoe4, d4ckof4, d4ckog4, d4ckoh4
    automated match to d1qm9a1
    complexed with cl, zn
  3. Domain d4ckoc3: 4cko C:337-444 [307132]
    Other proteins in same PDB: d4ckoa3, d4ckob4, d4ckoc4, d4ckod4, d4ckoe4, d4ckof4, d4ckog4, d4ckoh4
    automated match to d1qm9a1
    complexed with cl, zn
  4. Domain d4ckod3: 4cko D:337-444 [307134]
    Other proteins in same PDB: d4ckoa3, d4ckob4, d4ckoc4, d4ckod4, d4ckoe4, d4ckof4, d4ckog4, d4ckoh4
    automated match to d1qm9a1
    complexed with cl, zn
  5. Domain d4ckoe3: 4cko E:337-444 [307136]
    Other proteins in same PDB: d4ckoa3, d4ckob4, d4ckoc4, d4ckod4, d4ckoe4, d4ckof4, d4ckog4, d4ckoh4
    automated match to d1qm9a1
    complexed with cl, zn
  6. Domain d4ckof3: 4cko F:337-444 [307138]
    Other proteins in same PDB: d4ckoa3, d4ckob4, d4ckoc4, d4ckod4, d4ckoe4, d4ckof4, d4ckog4, d4ckoh4
    automated match to d1qm9a1
    complexed with cl, zn
  7. Domain d4ckog3: 4cko G:337-444 [307140]
    Other proteins in same PDB: d4ckoa3, d4ckob4, d4ckoc4, d4ckod4, d4ckoe4, d4ckof4, d4ckog4, d4ckoh4
    automated match to d1qm9a1
    complexed with cl, zn
  8. Domain d4ckoh3: 4cko H:337-444 [307142]
    Other proteins in same PDB: d4ckoa3, d4ckob4, d4ckoc4, d4ckod4, d4ckoe4, d4ckof4, d4ckog4, d4ckoh4
    automated match to d1qm9a1
    complexed with cl, zn
22. Domains for 4cq1:
  1. Domain d4cq1a1: 4cq1 A:337-444 [236982]
    Other proteins in same PDB: d4cq1a2, d4cq1b2, d4cq1c2, d4cq1d2, d4cq1e2, d4cq1f2, d4cq1g2, d4cq1h2
    automated match to d4ckob1
    complexed with cl, zn
  2. Domain d4cq1b1: 4cq1 B:336-444 [236983]
    Other proteins in same PDB: d4cq1a2, d4cq1b2, d4cq1c2, d4cq1d2, d4cq1e2, d4cq1f2, d4cq1g2, d4cq1h2
    automated match to d4ckob1
    complexed with cl, zn
  3. Domain d4cq1c1: 4cq1 C:337-444 [236985]
    Other proteins in same PDB: d4cq1a2, d4cq1b2, d4cq1c2, d4cq1d2, d4cq1e2, d4cq1f2, d4cq1g2, d4cq1h2
    automated match to d4ckob1
    complexed with cl, zn
  4. Domain d4cq1d1: 4cq1 D:337-444 [236988]
    Other proteins in same PDB: d4cq1a2, d4cq1b2, d4cq1c2, d4cq1d2, d4cq1e2, d4cq1f2, d4cq1g2, d4cq1h2
    automated match to d4ckob1
    complexed with cl, zn
  5. Domain d4cq1e1: 4cq1 E:337-444 [236984]
    Other proteins in same PDB: d4cq1a2, d4cq1b2, d4cq1c2, d4cq1d2, d4cq1e2, d4cq1f2, d4cq1g2, d4cq1h2
    automated match to d4ckob1
    complexed with cl, zn
  6. Domain d4cq1f1: 4cq1 F:337-444 [236986]
    Other proteins in same PDB: d4cq1a2, d4cq1b2, d4cq1c2, d4cq1d2, d4cq1e2, d4cq1f2, d4cq1g2, d4cq1h2
    automated match to d4ckob1
    complexed with cl, zn
  7. Domain d4cq1g1: 4cq1 G:337-444 [236987]
    Other proteins in same PDB: d4cq1a2, d4cq1b2, d4cq1c2, d4cq1d2, d4cq1e2, d4cq1f2, d4cq1g2, d4cq1h2
    automated match to d4ckob1
    complexed with cl, zn
  8. Domain d4cq1h1: 4cq1 H:337-444 [236989]
    Other proteins in same PDB: d4cq1a2, d4cq1b2, d4cq1c2, d4cq1d2, d4cq1e2, d4cq1f2, d4cq1g2, d4cq1h2
    automated match to d4ckob1
    complexed with cl, zn
23. Domain for 4iuf:
  - Domain d4iufa_: 4iuf A: [236408]
    automated match to d1uawa_
    protein/DNA complex; protein/RNA complex
24. Domains for 4lir:
  1. Domain d4lira_: 4lir A: [253601]
    automated match to d1wwha1
  2. Domain d4lirb_: 4lir B: [253602]
    automated match to d1wwha1
25. Domain for 4w90:
  - Domain d4w90b_: 4w90 B: [260464]
    automated match to d2nz4b_
    protein/RNA complex; complexed with 2ba, mg
26. Domain for 4yud:
  - Domain d4yuda1: 4yud A:144-229 [271154]
    Other proteins in same PDB: d4yuda2
    automated match to d2mhna_
27. Domains for 4zka:
  1. Domain d4zkaa_: 4zka A: [319169]
    automated match to d2erra1
    complexed with mes, pg4, so4
  2. Domain d4zkab_: 4zka B: [319173]
    automated match to d2erra1
    complexed with mes, pg4, so4
  3. Domain d4zkac_: 4zka C: [319154]
    automated match to d2erra1
    complexed with mes, pg4, so4
  4. Domain d4zkad_: 4zka D: [319184]
    automated match to d2erra1
    complexed with mes, pg4, so4
  5. Domain d4zkae_: 4zka E: [319155]
    automated match to d2erra1
    complexed with mes, pg4, so4
  6. Domain d4zkaf_: 4zka F: [319190]
    automated match to d2erra1
    complexed with mes, pg4, so4
28. Domains for 5im0:
  1. Domain d5im0a_: 5im0 A: [320430]
    Other proteins in same PDB: d5im0b2, d5im0b3
    automated match to d3s7ra_
  2. Domain d5im0b1: 5im0 B:77-156 [320575]
    Other proteins in same PDB: d5im0b2, d5im0b3
    automated match to d3s7ra_
29. Domains for 5oo6:
  1. Domain d5oo6b_: 5oo6 B: [341619]
    automated match to d1h2ux_
    complexed with mgt
  2. Domain d5oo6e_: 5oo6 E: [341755]
    automated match to d1h2ux_
    complexed with mgt
  3. Domain d5oo6h_: 5oo6 H: [341632]
    automated match to d1h2ux_
    complexed with mgt
  4. Domain d5oo6k_: 5oo6 K: [341640]
    automated match to d1h2ux_
    complexed with mgt
  5. Domain d5oo6n_: 5oo6 N: [341625]
    automated match to d1h2ux_
    complexed with mgt
  6. Domain d5oo6q_: 5oo6 Q: [341648]
    automated match to d1h2ux_
    complexed with mgt
  7. Domain d5oo6t_: 5oo6 T: [341641]
    automated match to d1h2ux_
    complexed with mgt
  8. Domain d5oo6w_: 5oo6 W: [341634]
    automated match to d1h2ux_
    complexed with mgt
Mouse (Mus musculus) [TaxId:10090] [188825] (3 PDB entries)
1. Domain for 2rok:
  - Domain d2roka1: 2rok A:430-516 [243737]
    Other proteins in same PDB: d2roka2, d2roka3
    automated match to d1whva_
    protein/RNA complex; complexed with 7mg, gdp
2. Domain for 3d2w:
  - Domain d3d2wa1: 3d2w A:192-261 [173655]
    Other proteins in same PDB: d3d2wa2
    automated match to d1wf0a_
    protein/DNA complex; protein/RNA complex; complexed with po4
3. Domains for 3v4m:
  1. Domain d3v4ma1: 3v4m A:372-475 [201157]
    Other proteins in same PDB: d3v4ma2
    automated match to d3v4mb_
    complexed with cl, na
  2. Domain d3v4mb_: 3v4m B: [195127]
    Other proteins in same PDB: d3v4ma2
    automated match to d1o0pa_
    complexed with cl, na
Nematode (Caenorhabditis elegans) [TaxId:6239] [258944] (3 PDB entries)
1. Domain for 2mgz:
  - Domain d2mgzb1: 2mgz B:20-123 [258945]
    Other proteins in same PDB: d2mgza1, d2mgza2, d2mgzb2
    automated match to d2cqda1
    protein/RNA complex
2. Domain for 2ru3:
  - Domain d2ru3a1: 2ru3 A:20-121 [259025]
    Other proteins in same PDB: d2ru3a2
    automated match to d2cqda1
    protein/RNA complex
3. Domain for 4ch0:
  - Domain d4ch0s1: 4ch0 S:28-121 [259332]
    Other proteins in same PDB: d4ch0s2
    automated match to d2cqda1
Norway rat (Rattus norvegicus) [TaxId:10116] [272203] (1 PDB entry)
- Domain for 2mql:
  - Domain d2mqla_: 2mql A: [272204]
    automated match to d1wexa_

More info for Protein automated matches from d.58.7.1: Canonical RBD

Timeline for Protein automated matches from d.58.7.1: Canonical RBD:

Protein automated matches from d.58.7.1: Canonical RBD first appeared in SCOPe 2.01
Protein automated matches from d.58.7.1: Canonical RBD appears in SCOPe 2.07