Lineage for Protein: automated matches

  1. Root: SCOPe 2.06
  2. 2170735Class d: Alpha and beta proteins (a+b) [53931] (385 folds)
  3. 2234637Fold d.169: C-type lectin-like [56435] (1 superfamily)
    unusual fold
  4. 2234638Superfamily d.169.1: C-type lectin-like [56436] (9 families) (S)
  5. 2234639Family d.169.1.1: C-type lectin domain [56437] (29 proteins)
    Pfam PF00059
  6. 2235083Protein automated matches [190329] (9 species)
    not a true protein

Species:

  1. 2235084Agkistrodon rhodostoma [TaxId:8717] [188575] (1 PDB entry)
  2. 2235089Bothrops jararacussu [TaxId:8726] [326863] (1 PDB entry)
  3. 2235100Brachyopsis rostratus [TaxId:412977] [188571] (1 PDB entry)
  4. 2235102Cucumaria echinata [TaxId:40245] [271988] (1 PDB entry)
  5. 2235107Human (Homo sapiens) [TaxId:9606] [187151] (9 PDB entries)
    1. Domains for 2h2r:
      1. 2235111Domain d2h2ra_: 2h2r A: [241995]
        automated match to d1t8ca1
      2. 2235112Domain d2h2rb_: 2h2r B: [241996]
        automated match to d1t8ca1
    2. Domain for 2h2t:
    3. Domains for 3bdw:
      1. 2235133Domain d3bdwb_: 3bdw B: [199086]
        Other proteins in same PDB: d3bdwa_, d3bdwc_
        automated match to d1fm5a_
      2. 2235134Domain d3bdwd_: 3bdw D: [199087]
        Other proteins in same PDB: d3bdwa_, d3bdwc_
        automated match to d1fm5a_
    4. Domains for 3cck:
      1. 2235113Domain d3ccka_: 3cck A: [173139]
        automated match to d1fm5a_
        complexed with cl
      2. 2235114Domain d3cckb_: 3cck B: [173140]
        automated match to d1fm5a_
        complexed with cl
    5. Domain for 3cfw:
    6. Domains for 3hup:
      1. 2235108Domain d3hupa_: 3hup A: [177850]
        automated match to d1fm5a_
        complexed with cl, na
      2. 2235109Domain d3hupb_: 3hup B: [177851]
        automated match to d1fm5a_
        complexed with cl, na
    7. Domain for 3l9j:
    8. Domains for 4m17:
      1. 2235120Domain d4m17a_: 4m17 A: [229658]
        automated match to d4m17f1
        complexed with ca; mutant
      2. 2235121Domain d4m17b_: 4m17 B: [235522]
        automated match to d4m17a_
        complexed with ca; mutant
      3. 2235122Domain d4m17c1: 4m17 C:235-355 [229657]
        automated match to d1pwba1
        complexed with ca; mutant
      4. 2235123Domain d4m17d1: 4m17 D:235-355 [229431]
        automated match to d1pwba1
        complexed with ca; mutant
      5. 2235124Domain d4m17e1: 4m17 E:235-355 [229432]
        automated match to d1pwba1
        complexed with ca; mutant
      6. 2235125Domain d4m17f1: 4m17 F:235-355 [229430]
        automated match to d1pwba1
        complexed with ca; mutant
      7. 2235126Domain d4m17g_: 4m17 G: [229660]
        automated match to d4m17f1
        complexed with ca; mutant
      8. 2235127Domain d4m17h_: 4m17 H: [235521]
        automated match to d4m17a_
        complexed with ca; mutant
      9. 2235128Domain d4m17i_: 4m17 I: [229662]
        automated match to d4m17f1
        complexed with ca; mutant
      10. 2235129Domain d4m17j_: 4m17 J: [229661]
        automated match to d4m17f1
        complexed with ca; mutant
      11. 2235130Domain d4m17k_: 4m17 K: [229656]
        automated match to d4m17f1
        complexed with ca; mutant
      12. 2235131Domain d4m17l_: 4m17 L: [229659]
        automated match to d4m17f1
        complexed with ca; mutant
    9. Domains for 4pdc:
      1. 2235115Domain d4pdca_: 4pdc A: [257483]
        automated match to d1hyrb_
      2. 2235116Domain d4pdcb_: 4pdc B: [258115]
        automated match to d1hyrb_
      3. 2235117Domain d4pdcc_: 4pdc C: [263469]
        automated match to d1hyrb_
      4. 2235118Domain d4pdcd_: 4pdc D: [263470]
        automated match to d1hyrb_
  6. 2235135Human herpesvirus 4 (strain b95-8) [TaxId:10377] [255828] (1 PDB entry)
  7. 2235138Malayan pit viper (Calloselasma rhodostoma) [TaxId:8717] [188489] (3 PDB entries)
    1. Domains for 2vrp:
      1. 2235139Domain d2vrpa_: 2vrp A: [168775]
        automated match to d1y17a1
        complexed with cl, na
      2. 2235140Domain d2vrpb_: 2vrp B: [168776]
        automated match to d1iodb_
        complexed with cl, na
    2. Domains for 3wwk:
      1. 2235153Domain d3wwka_: 3wwk A: [260626]
        Other proteins in same PDB: d3wwkc_, d3wwke_, d3wwkf_, d3wwki_, d3wwkl_
        automated match to d3bx4c_
      2. 2235154Domain d3wwkb_: 3wwk B: [296133]
        Other proteins in same PDB: d3wwkc_, d3wwke_, d3wwkf_, d3wwki_, d3wwkl_
        automated match to d3bx4d_
      3. 2235155Domain d3wwkd_: 3wwk D: [260625]
        Other proteins in same PDB: d3wwkc_, d3wwke_, d3wwkf_, d3wwki_, d3wwkl_
        automated match to d3bx4c_
      4. 2235156Domain d3wwkg_: 3wwk G: [296135]
        Other proteins in same PDB: d3wwkc_, d3wwke_, d3wwkf_, d3wwki_, d3wwkl_
        automated match to d3wwka_
      5. 2235157Domain d3wwkh_: 3wwk H: [296136]
        Other proteins in same PDB: d3wwkc_, d3wwke_, d3wwkf_, d3wwki_, d3wwkl_
        automated match to d3bx4d_
      6. 2235158Domain d3wwkj_: 3wwk J: [296138]
        Other proteins in same PDB: d3wwkc_, d3wwke_, d3wwkf_, d3wwki_, d3wwkl_
        automated match to d3wwka_
      7. 2235159Domain d3wwkk_: 3wwk K: [296139]
        Other proteins in same PDB: d3wwkc_, d3wwke_, d3wwkf_, d3wwki_, d3wwkl_
        automated match to d3bx4d_
    3. Domains for 5thp:
      1. 2235141Domain d5thpa_: 5thp A: [337233]
        Other proteins in same PDB: d5thpc_, d5thpf_, d5thpi_, d5thpl_, d5thpo_, d5thpr_
        automated match to d1v4la_
        complexed with cl, gol, mg, na, so4
      2. 2235142Domain d5thpb_: 5thp B: [337238]
        Other proteins in same PDB: d5thpc_, d5thpf_, d5thpi_, d5thpl_, d5thpo_, d5thpr_
        automated match to d1v7pb_
        complexed with cl, gol, mg, na, so4
      3. 2235143Domain d5thpd_: 5thp D: [337256]
        Other proteins in same PDB: d5thpc_, d5thpf_, d5thpi_, d5thpl_, d5thpo_, d5thpr_
        automated match to d1v4la_
        complexed with cl, gol, mg, na, so4
      4. 2235144Domain d5thpe_: 5thp E: [337252]
        Other proteins in same PDB: d5thpc_, d5thpf_, d5thpi_, d5thpl_, d5thpo_, d5thpr_
        automated match to d1v7pb_
        complexed with cl, gol, mg, na, so4
      5. 2235145Domain d5thpg_: 5thp G: [337234]
        Other proteins in same PDB: d5thpc_, d5thpf_, d5thpi_, d5thpl_, d5thpo_, d5thpr_
        automated match to d1v4la_
        complexed with cl, gol, mg, na, so4
      6. 2235146Domain d5thph_: 5thp H: [337239]
        Other proteins in same PDB: d5thpc_, d5thpf_, d5thpi_, d5thpl_, d5thpo_, d5thpr_
        automated match to d1v7pb_
        complexed with cl, gol, mg, na, so4
      7. 2235147Domain d5thpj_: 5thp J: [337242]
        Other proteins in same PDB: d5thpc_, d5thpf_, d5thpi_, d5thpl_, d5thpo_, d5thpr_
        automated match to d1v4la_
        complexed with cl, gol, mg, na, so4
      8. 2235148Domain d5thpk_: 5thp K: [337312]
        Other proteins in same PDB: d5thpc_, d5thpf_, d5thpi_, d5thpl_, d5thpo_, d5thpr_
        automated match to d1v7pb_
        complexed with cl, gol, mg, na, so4
      9. 2235149Domain d5thpm_: 5thp M: [337278]
        Other proteins in same PDB: d5thpc_, d5thpf_, d5thpi_, d5thpl_, d5thpo_, d5thpr_
        automated match to d1v4la_
        complexed with cl, gol, mg, na, so4
      10. 2235150Domain d5thpn_: 5thp N: [337240]
        Other proteins in same PDB: d5thpc_, d5thpf_, d5thpi_, d5thpl_, d5thpo_, d5thpr_
        automated match to d1v7pb_
        complexed with cl, gol, mg, na, so4
      11. 2235151Domain d5thpp_: 5thp P: [337261]
        Other proteins in same PDB: d5thpc_, d5thpf_, d5thpi_, d5thpl_, d5thpo_, d5thpr_
        automated match to d1v4la_
        complexed with cl, gol, mg, na, so4
      12. 2235152Domain d5thpq_: 5thp Q: [337374]
        Other proteins in same PDB: d5thpc_, d5thpf_, d5thpi_, d5thpl_, d5thpo_, d5thpr_
        automated match to d1v7pb_
        complexed with cl, gol, mg, na, so4
  8. 2235160Mouse (Mus musculus) [TaxId:10090] [187300] (3 PDB entries)
    1. Domain for 3c8k:
    2. Domains for 3cad:
      1. 2235164Domain d3cada_: 3cad A: [199175]
        automated match to d3cadb_
      2. 2235165Domain d3cadb_: 3cad B: [195143]
        automated match to d3g8ka_
    3. Domains for 3g8k:
      1. 2235161Domain d3g8ka_: 3g8k A: [176420]
        automated match to d1qo3c_
      2. 2235162Domain d3g8kb_: 3g8k B: [176421]
        automated match to d1qo3c_
  9. 2235166Sharp-nosed viper (Deinagkistrodon acutus) [TaxId:36307] [195597] (1 PDB entry)

More info for Protein automated matches from d.169.1.1: C-type lectin domain

Timeline for Protein automated matches from d.169.1.1: C-type lectin domain: