Lineage for Protein: automated matches

  1. Root: SCOPe 2.08
  2. 2826024Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
  3. 2892669Fold c.66: S-adenosyl-L-methionine-dependent methyltransferases [53334] (1 superfamily)
    core: 3 layers, a/b/a; mixed beta-sheet of 7 strands, order 3214576; strand 7 is antiparallel to the rest
  4. 2892670Superfamily c.66.1: S-adenosyl-L-methionine-dependent methyltransferases [53335] (61 families) (S)
  5. 2893582Family c.66.1.25: mRNA cap methylase [88785] (4 proteins)
  6. 2893632Protein automated matches [190302] (11 species)
    not a true protein

Species:

  1. 2893633Dengue virus 2 16681-pdk53 [TaxId:31635] [188733] (1 PDB entry)
  2. 2893635Dengue virus 3 [TaxId:11069] [189561] (3 PDB entries)
    1. Domains for 3p8z:
      1. 2893638Domain d3p8za_: 3p8z A: [183595]
        automated match to d1r6aa_
        protein/RNA complex; complexed with 36a, sah
      2. 2893639Domain d3p8zc_: 3p8z C: [183596]
        automated match to d1r6aa_
        protein/RNA complex; complexed with 36a, sah
    2. Domains for 3p97:
      1. 2893636Domain d3p97a_: 3p97 A: [183601]
        automated match to d1r6aa_
        complexed with sam
      2. 2893637Domain d3p97c_: 3p97 C: [183602]
        automated match to d1r6aa_
        complexed with sam
    3. Domains for 5e9q:
      1. 2893640Domain d5e9qa_: 5e9q A: [324449]
        automated match to d2xbma_
        complexed with 5ky, sam
      2. 2893641Domain d5e9qc_: 5e9q C: [324481]
        automated match to d2xbma_
        complexed with 5ky, sam
  3. 2893642Dengue virus [TaxId:12637] [189508] (1 PDB entry)
  4. 2893647Human betacoronavirus 2c EMC/2012 [TaxId:1235996] [419989] (12 PDB entries)
    1. Domain for 5yn5:
    2. Domain for 5yn6:
    3. Domain for 5yn8:
    4. Domain for 5ynb:
    5. Domain for 5ynf:
    6. Domain for 5yni:
    7. Domain for 5ynj:
    8. Domain for 5ynm:
    9. Domain for 5ynn:
    10. Domain for 5yno:
    11. Domain for 5ynp:
    12. Domain for 5ynq:
  5. 2893660Human coronavirus oc43 [TaxId:31631] [420140] (1 PDB entry)
  6. 2893662SARS coronavirus [TaxId:227859] [419868] (1 PDB entry)
  7. 2893664Severe acute respiratory syndrome coronavirus 2 [TaxId:2697049] [420071] (19 PDB entries)
    1. Domain for 6w4h:
    2. Domain for 6w61:
    3. Domains for 6w75:
      1. 2893666Domain d6w75a_: 6w75 A: [412070]
        Other proteins in same PDB: d6w75b_, d6w75d_
        automated match to d2xyqa_
        complexed with fmt, na, sam, zn
      2. 2893667Domain d6w75c_: 6w75 C: [412071]
        Other proteins in same PDB: d6w75b_, d6w75d_
        automated match to d2xyqa_
        complexed with fmt, na, sam, zn
    4. Domains for 6wjt:
      1. 2893670Domain d6wjta_: 6wjt A: [412092]
        Other proteins in same PDB: d6wjtb_, d6wjtd_
        automated match to d2xyqa_
        complexed with fmt, na, sah, zn
      2. 2893671Domain d6wjtc_: 6wjt C: [412093]
        Other proteins in same PDB: d6wjtb_, d6wjtd_
        automated match to d2xyqa_
        complexed with fmt, na, sah, zn
    5. Domains for 6wkq:
      1. 2893668Domain d6wkqa_: 6wkq A: [412097]
        Other proteins in same PDB: d6wkqb_, d6wkqd_
        automated match to d2xyqa_
        complexed with fmt, na, sfg, zn
      2. 2893669Domain d6wkqc_: 6wkq C: [412098]
        Other proteins in same PDB: d6wkqb_, d6wkqd_
        automated match to d2xyqa_
        complexed with fmt, na, sfg, zn
    6. Domain for 6wq3:
    7. Domain for 6wrz:
    8. Domain for 6wvn:
    9. Domain for 6xkm:
    10. Domain for 6yz1:
    11. Domain for 7bq7:
    12. Domain for 7c2i:
    13. Domain for 7c2j:
    14. Domain for 7jhe:
    15. Domain for 7jib:
    16. Domain for 7jpe:
    17. Domain for 7koa:
    18. Domain for 7lw3:
    19. Domain for 7lw4:
  8. 2893687Vaccinia virus [TaxId:10245] [187111] (2 PDB entries)
    1. Domain for 2ga9:
    2. Domain for 2gaf:
  9. 2893690West Nile virus [TaxId:11082] [187969] (2 PDB entries)
    1. Domains for 2oy0:
      1. 2893693Domain d2oy0a_: 2oy0 A: [166919]
        automated match to d1r6aa_
        complexed with sah
      2. 2893694Domain d2oy0b_: 2oy0 B: [166920]
        automated match to d1r6aa_
        complexed with sah
    2. Domains for 3lkz:
      1. 2893691Domain d3lkza_: 3lkz A: [247469]
        automated match to d2px8b_
        complexed with gol, sfg
      2. 2893692Domain d3lkzb_: 3lkz B: [247470]
        automated match to d2px8b_
        complexed with gol, sfg
  10. 2893695Zika virus (strain mr 766) [TaxId:64320] [322798] (8 PDB entries)
    1. Domain for 5kqs:
    2. Domains for 5mrk:
      1. 2893700Domain d5mrka_: 5mrk A: [329041]
        automated match to d2xbma_
        complexed with cl, sfg
      2. 2893701Domain d5mrkb_: 5mrk B: [329023]
        automated match to d2xbma_
        complexed with cl, sfg
    3. Domains for 5njv:
      1. 2893702Domain d5njva_: 5njv A: [346916]
        automated match to d5wxba_
        complexed with cl, sam
      2. 2893703Domain d5njvb_: 5njv B: [347112]
        automated match to d5wxba_
        complexed with cl, sam
      3. 2893704Domain d5njvc_: 5njv C: [347073]
        automated match to d5wxba_
        complexed with cl, sam
      4. 2893705Domain d5njvd_: 5njv D: [347207]
        automated match to d5wxba_
        complexed with cl, sam
    4. Domains for 5ulp:
      1. 2893697Domain d5ulpa_: 5ulp A: [334300]
        automated match to d2xbma_
        complexed with cl, ipa, kb1, na, ure
      2. 2893698Domain d5ulpb_: 5ulp B: [334284]
        automated match to d2xbma_
        complexed with cl, ipa, kb1, na, ure
    5. Domains for 5vim:
      1. 2893706Domain d5vima_: 5vim A: [338711]
        Other proteins in same PDB: d5vimb2
        automated match to d2px8a_
        complexed with sam, so4
      2. 2893707Domain d5vimb1: 5vim B:5-265 [338720]
        Other proteins in same PDB: d5vimb2
        automated match to d2px8a_
        complexed with sam, so4
    6. Domain for 5wxb:
    7. Domains for 5wz1:
      1. 2893708Domain d5wz1a_: 5wz1 A: [330938]
        automated match to d2px5a_
        complexed with sam
      2. 2893709Domain d5wz1b_: 5wz1 B: [330951]
        automated match to d2px5a_
        complexed with sam
      3. 2893710Domain d5wz1c_: 5wz1 C: [330861]
        automated match to d2px5a_
        complexed with sam
      4. 2893711Domain d5wz1d_: 5wz1 D: [330950]
        automated match to d2px5a_
        complexed with sam
      5. 2893712Domain d5wz1e_: 5wz1 E: [330873]
        automated match to d2px5a_
        complexed with sam
      6. 2893713Domain d5wz1f_: 5wz1 F: [330872]
        automated match to d2px5a_
        complexed with sam
      7. 2893714Domain d5wz1g_: 5wz1 G: [330867]
        automated match to d2px5a_
        complexed with sam
      8. 2893715Domain d5wz1h_: 5wz1 H: [330882]
        automated match to d2px5a_
        complexed with sam
    8. Domains for 5wz2:
      1. 2893716Domain d5wz2a_: 5wz2 A: [330926]
        automated match to d2px5a_
        complexed with gta, sam
      2. 2893717Domain d5wz2b_: 5wz2 B: [330896]
        automated match to d2px5a_
        complexed with gta, sam
      3. 2893718Domain d5wz2c_: 5wz2 C: [330948]
        automated match to d2px5a_
        complexed with gta, sam
  11. 2893719Zika virus [TaxId:64320] [322811] (3 PDB entries)
    1. Domain for 5kqr:
    2. Domains for 5m5b:
      1. 2893721Domain d5m5ba_: 5m5b A: [327661]
        automated match to d2px8b_
        complexed with cl, gol, sam, so4
      2. 2893722Domain d5m5bb_: 5m5b B: [327664]
        automated match to d2px8b_
        complexed with cl, gol, sam, so4
    3. Domains for 5nju:
      1. 2893723Domain d5njua_: 5nju A: [346877]
        automated match to d5wxba_
        complexed with mg, sah
      2. 2893724Domain d5njub_: 5nju B: [346902]
        automated match to d5wxba_
        complexed with mg, sah

More info for Protein automated matches from c.66.1.25: mRNA cap methylase

Timeline for Protein automated matches from c.66.1.25: mRNA cap methylase: