Lineage for Protein: automated matches

  1. Root: SCOPe 2.07
  2. 2494617Class d: Alpha and beta proteins (a+b) [53931] (388 folds)
  3. 2495000Fold d.2: Lysozyme-like [53954] (1 superfamily)
    common alpha+beta motif for the active site region
  4. 2495001Superfamily d.2.1: Lysozyme-like [53955] (12 families) (S)
  5. 2495039Family d.2.1.2: C-type lysozyme [53960] (3 protein domains)
    automatically mapped to Pfam PF00062
  6. 2496184Protein automated matches [190299] (7 species)
    not a true protein

Species:

  1. 2496185Chicken (Gallus gallus) [TaxId:9031] [196365] (14 PDB entries)
    1. Domain for 3b6l:
    2. Domain for 3b72:
    3. Domain for 3qy4:
    4. Domain for 3tmu:
    5. Domain for 3tmv:
    6. Domain for 3tmw:
    7. Domain for 3tmx:
    8. Domains for 4cj2:
      1. 2496188Domain d4cj2a_: 4cj2 A: [262576]
        Other proteins in same PDB: d4cj2c1, d4cj2c2, d4cj2d1, d4cj2d2
        automated match to d1ghla_
        complexed with gol
      2. 2496189Domain d4cj2b_: 4cj2 B: [256621]
        Other proteins in same PDB: d4cj2c1, d4cj2c2, d4cj2d1, d4cj2d2
        automated match to d1ghla_
        complexed with gol
    9. Domain for 4wg1:
    10. Domain for 4wg7:
    11. Domain for 4wl6:
    12. Domain for 4wl7:
    13. Domain for 4yeo:
    14. Domains for 5a3z:
      1. 2496195Domain d5a3za_: 5a3z A: [279114]
        automated match to d1ghla_
        complexed with gol, no3
      2. 2496196Domain d5a3zb_: 5a3z B: [279115]
        automated match to d1ghla_
        complexed with gol, no3
  2. 2496202Cow (Bos taurus) [TaxId:9913] [187106] (2 PDB entries)
    1. Domains for 2g4n:
      1. 2496204Domain d2g4na_: 2g4n A: [134598]
        automated match to d1f6ra_
        complexed with ca, k
      2. 2496205Domain d2g4nb_: 2g4n B: [134599]
        automated match to d1f6ra_
        complexed with ca, k
      3. 2496206Domain d2g4nc_: 2g4n C: [134600]
        automated match to d1f6ra_
        complexed with ca, k
      4. 2496207Domain d2g4nd_: 2g4n D: [134601]
        automated match to d1f6ra_
        complexed with ca, k
      5. 2496208Domain d2g4ne_: 2g4n E: [134602]
        automated match to d1f6ra_
        complexed with ca, k
      6. 2496209Domain d2g4nf_: 2g4n F: [134603]
        automated match to d1f6ra_
        complexed with ca, k
    2. Domain for 2z2f:
  3. 2496210Dog (Canis familiaris) [TaxId:9615] [188283] (1 PDB entry)
  4. 2496213Duck (Anas platyrhynchos) [TaxId:8839] [341650] (3 PDB entries)
    1. Domain for 5v8g:
    2. Domains for 5v92:
      1. 2496214Domain d5v92a_: 5v92 A: [341742]
        automated match to d2vb1a_
        complexed with po4, trs
      2. 2496215Domain d5v92b_: 5v92 B: [341672]
        automated match to d2vb1a_
        complexed with po4, trs
    3. Domains for 5v94:
      1. 2496217Domain d5v94a_: 5v94 A: [341651]
        automated match to d2vb1a_
        complexed with mrd, po4, trs
      2. 2496218Domain d5v94b_: 5v94 B: [341661]
        automated match to d2vb1a_
        complexed with mrd, po4, trs
  5. 2496219Human (Homo sapiens) [TaxId:9606] [188701] (6 PDB entries)
    1. Domain for 2zil:
    2. Domain for 2zwb:
    3. Domain for 3b0i:
    4. Domains for 3b0o:
      1. 2496220Domain d3b0oa1: 3b0o A:2-120 [199000]
        Other proteins in same PDB: d3b0oa2, d3b0ob2
        automated match to d3b0ob_
        complexed with ca
      2. 2496221Domain d3b0ob1: 3b0o B:2-120 [195182]
        Other proteins in same PDB: d3b0oa2, d3b0ob2
        automated match to d1hmla_
        complexed with ca
    5. Domain for 3eba:
    6. Domain for 3fe0:
  6. 2496227Mus musculus [311150] (7 PDB entries)
    1. Domains for 1j8w:
      1. 2496228Domain d1j8wa_: 1j8w A: [302545]
        Other proteins in same PDB: d1j8wb1, d1j8wb2, d1j8wd_
        automated match to d1yroa_
        complexed with ca, glc
      2. 2496229Domain d1j8wc_: 1j8w C: [302548]
        Other proteins in same PDB: d1j8wb1, d1j8wb2, d1j8wd_
        automated match to d1yroa_
        complexed with ca, glc
    2. Domains for 1j8x:
      1. 2496234Domain d1j8xa_: 1j8x A: [302550]
        Other proteins in same PDB: d1j8xb1, d1j8xb2, d1j8xd_
        automated match to d1yroa_
        complexed with ca, mn, udp
      2. 2496235Domain d1j8xc_: 1j8x C: [302553]
        Other proteins in same PDB: d1j8xb1, d1j8xb2, d1j8xd_
        automated match to d1yroa_
        complexed with ca, mn, udp
    3. Domains for 1j92:
      1. 2496232Domain d1j92a_: 1j92 A: [302555]
        Other proteins in same PDB: d1j92b1, d1j92b2, d1j92d_
        automated match to d1yroa_
        complexed with ca, nag
      2. 2496233Domain d1j92c_: 1j92 C: [302558]
        Other proteins in same PDB: d1j92b1, d1j92b2, d1j92d_
        automated match to d1yroa_
        complexed with ca, nag
    4. Domains for 1j94:
      1. 2496240Domain d1j94a_: 1j94 A: [302560]
        Other proteins in same PDB: d1j94b_, d1j94d1, d1j94d2
        automated match to d1yroa_
        complexed with ca, udp
      2. 2496241Domain d1j94c_: 1j94 C: [302562]
        Other proteins in same PDB: d1j94b_, d1j94d1, d1j94d2
        automated match to d1yroa_
        complexed with ca, udp
    5. Domains for 1jn8:
      1. 2496230Domain d1jn8a_: 1jn8 A: [302587]
        Other proteins in same PDB: d1jn8b_, d1jn8d_
        automated match to d1yroa_
        complexed with ca, nag; mutant
      2. 2496231Domain d1jn8c_: 1jn8 C: [302589]
        Other proteins in same PDB: d1jn8b_, d1jn8d_
        automated match to d1yroa_
        complexed with ca, nag; mutant
    6. Domains for 1jna:
      1. 2496238Domain d1jnaa_: 1jna A: [302591]
        Other proteins in same PDB: d1jnab1, d1jnab2, d1jnad_
        automated match to d1yroa_
        complexed with bgn, ca
      2. 2496239Domain d1jnac_: 1jna C: [302594]
        Other proteins in same PDB: d1jnab1, d1jnab2, d1jnad_
        automated match to d1yroa_
        complexed with bgn, ca
    7. Domains for 1jnc:
      1. 2496236Domain d1jnca_: 1jnc A: [302596]
        Other proteins in same PDB: d1jncb1, d1jncb2, d1jncd_
        automated match to d1yroa_
        complexed with ca, gud, mn
      2. 2496237Domain d1jncc_: 1jnc C: [302599]
        Other proteins in same PDB: d1jncb1, d1jncb2, d1jncd_
        automated match to d1yroa_
        complexed with ca, gud, mn
  7. 2496242Pelodiscus sinensis [TaxId:13735] [187773] (1 PDB entry)

More info for Protein automated matches from d.2.1.2: C-type lysozyme

Timeline for Protein automated matches from d.2.1.2: C-type lysozyme: