Lineage for Protein: automated matches

  1. Root: SCOPe 2.08
  2. Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
  3. Fold c.1: TIM beta/alpha-barrel [51350] (34 superfamilies)
    contains parallel beta-sheet barrel, closed; n=8, S=8; strand order 12345678
    the first seven superfamilies have similar phosphate-binding sites
  4. Superfamily c.1.15: Xylose isomerase-like [51658] (8 families) (S)
    different families share similar but non-identical metal-binding sites
  5. Family c.1.15.3: Xylose isomerase [51665] (2 proteins)
  6. Protein automated matches [190298] (3 species)
    not a true protein

Species:

  1. Paenibacillus sp. [TaxId:1079050] [362188] (1 PDB entry)
  2. Streptomyces rubiginosus [TaxId:1929] [187248] (17 PDB entries)
    1. Domain for 2g4j:
    2. Domain for 2glk:
    3. Domain for 2gub:
    4. Domain for 2gve:
    5. Domain for 3cwh:
    6. Domains for 3gnx:
      1. Domain d3gnxa_: 3gnx A: [176787]
        automated match to d1clka_
        complexed with mn, xyl
      2. Domain d3gnxe_: 3gnx E: [176788]
        automated match to d1clka_
        complexed with mn, xyl
    7. Domain for 3n4a:
    8. Domain for 3qys:
    9. Domain for 3qza:
    10. Domain for 3u3h:
    11. Domain for 4a8i:
    12. Domain for 4a8l:
    13. Domain for 4a8r:
    14. Domain for 4duo:
    15. Domain for 4dvo:
    16. Domains for 7cjo:
      1. Domain d7cjob_: 7cjo B: [417795]
        automated match to d1dxia_
        complexed with edo, mg
      2. Domain d7cjoa_: 7cjo A: [417794]
        automated match to d1dxia_
        complexed with edo, mg
    17. Domains for 7cjp:
      1. Domain d7cjpa_: 7cjp A: [417796]
        automated match to d1dxia_
        complexed with edo
      2. Domain d7cjpb_: 7cjp B: [417797]
        automated match to d1dxia_
        complexed with edo
  3. Streptomyces sp. [TaxId:463642] [377717] (2 PDB entries)
    1. Domain for 6n98:
    2. Domains for 6n99:
      1. Domain d6n99a_: 6n99 A: [377718]
        automated match to d1dxia_
        complexed with mg, mpd, so4
      2. Domain d6n99b_: 6n99 B: [377732]
        automated match to d1dxia_
        complexed with mg, mpd, so4
      3. Domain d6n99c_: 6n99 C: [377720]
        automated match to d1dxia_
        complexed with mg, mpd, so4
      4. Domain d6n99d_: 6n99 D: [377719]
        automated match to d1dxia_
        complexed with mg, mpd, so4

More info for Protein automated matches from c.1.15.3: Xylose isomerase

Timeline for Protein automated matches from c.1.15.3: Xylose isomerase: