Lineage for Protein: automated matches

  1. Root: SCOPe 2.06
  2. 2078559Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
  3. 2143708Fold c.93: Periplasmic binding protein-like I [53821] (1 superfamily)
    consists of two similar intertwined domain with 3 layers (a/b/a) each: duplication
    parallel beta-sheet of 6 strands, order 213456
  4. 2143709Superfamily c.93.1: Periplasmic binding protein-like I [53822] (2 families) (S)
    Similar in architecture to the superfamily II but partly differs in topology
  5. 2143710Family c.93.1.1: L-arabinose binding protein-like [53823] (18 protein domains)
  6. 2143939Protein automated matches [190296] (11 species)
    not a true protein

Species:

  1. 2143940Actinobacillus succinogenes [TaxId:339671] [273094] (1 PDB entry)
  2. 2143942Bacillus anthracis [TaxId:198094] [238505] (1 PDB entry)
  3. 2143944Escherichia coli K-12 [TaxId:83333] [187775] (6 PDB entries)
    1. Domain for 1z15:
    2. Domain for 1z16:
    3. Domain for 1z17:
    4. Domain for 1z18:
    5. Domain for 2gx6:
    6. Domains for 3edc:
      1. 2143949Domain d3edca_: 3edc A: [245821]
        automated match to d1tlfa_
        complexed with hez
      2. 2143950Domain d3edcb_: 3edc B: [245822]
        automated match to d1tlfa_
        complexed with hez
      3. 2143951Domain d3edcc_: 3edc C: [245823]
        automated match to d1tlfa_
        complexed with hez
      4. 2143952Domain d3edcd_: 3edc D: [245824]
        automated match to d1tlfa_
        complexed with hez
  4. 2143954Escherichia coli [TaxId:536056] [311440] (2 PDB entries)
    1. Domains for 4rzs:
      1. 2143955Domain d4rzsa2: 4rzs A:61-358 [309620]
        Other proteins in same PDB: d4rzsa1, d4rzsb1
        automated match to d1lbga2
        complexed with gol
      2. 2143956Domain d4rzsb2: 4rzs B:61-357 [309622]
        Other proteins in same PDB: d4rzsa1, d4rzsb1
        automated match to d1lbga2
        complexed with gol
      3. 2143957Domain d4rzsc_: 4rzs C: [309623]
        Other proteins in same PDB: d4rzsa1, d4rzsb1
        automated match to d3edca_
        complexed with gol
      4. 2143958Domain d4rzsd_: 4rzs D: [309624]
        Other proteins in same PDB: d4rzsa1, d4rzsb1
        automated match to d3edca_
        complexed with gol
    2. Domains for 4rzt:
      1. 2143959Domain d4rzta_: 4rzt A: [309625]
        automated match to d3edca_
        complexed with 40j
      2. 2143960Domain d4rztb_: 4rzt B: [309626]
        automated match to d3edca_
        complexed with 40j
      3. 2143961Domain d4rztc_: 4rzt C: [309627]
        automated match to d3edca_
        complexed with 40j
      4. 2143962Domain d4rztd_: 4rzt D: [309628]
        automated match to d3edca_
        complexed with 40j
  5. 2143963Human (Homo sapiens) [TaxId:9606] [189164] (3 PDB entries)
    1. Domain for 2wjw:
    2. Domains for 3ks9:
      1. 2143965Domain d3ks9a_: 3ks9 A: [179640]
        automated match to d1ewkb_
        complexed with mg, nag, z99
      2. 2143966Domain d3ks9b_: 3ks9 B: [179641]
        automated match to d1ewkb_
        complexed with mg, nag, z99
    3. Domains for 3lmk:
      1. 2143967Domain d3lmka_: 3lmk A: [180393]
        automated match to d1ewkb_
        complexed with glu, mg, nag
      2. 2143968Domain d3lmkb_: 3lmk B: [180394]
        automated match to d1ewkb_
        complexed with glu, mg, nag
  6. 2143969Norway rat (Rattus norvegicus) [TaxId:10116] [267861] (5 PDB entries)
    1. Domains for 3o21:
      1. 2143971Domain d3o21a_: 3o21 A: [265101]
        automated match to d3h5va_
        complexed with nag, po4
      2. 2143972Domain d3o21b_: 3o21 B: [265102]
        automated match to d3h5va_
        complexed with nag, po4
      3. 2143973Domain d3o21c_: 3o21 C: [265103]
        automated match to d3h5va_
        complexed with nag, po4
      4. 2143974Domain d3o21d_: 3o21 D: [265104]
        automated match to d3h5va_
        complexed with nag, po4
    2. Domains for 3saj:
      1. 2143975Domain d3saja1: 3saj A:4-374 [265346]
        Other proteins in same PDB: d3saja2, d3saja3, d3sajb2, d3sajc2, d3sajd2
        automated match to d3h5va_
        complexed with nag
      2. 2143976Domain d3sajb1: 3saj B:4-373 [265347]
        Other proteins in same PDB: d3saja2, d3saja3, d3sajb2, d3sajc2, d3sajd2
        automated match to d3h5va_
        complexed with nag
      3. 2143977Domain d3sajc1: 3saj C:4-373 [265348]
        Other proteins in same PDB: d3saja2, d3saja3, d3sajb2, d3sajc2, d3sajd2
        automated match to d3h5va_
        complexed with nag
      4. 2143978Domain d3sajd1: 3saj D:4-373 [265349]
        Other proteins in same PDB: d3saja2, d3saja3, d3sajb2, d3sajc2, d3sajd2
        automated match to d3h5va_
        complexed with nag
    3. Domain for 4gpa:
    4. Domains for 5fwx:
      1. 2271300Domain d5fwxd_: 5fwx D: [314605]
        automated match to d4gpaa_
        complexed with nag, so4
      2. 2271303Domain d5fwxb_: 5fwx B: [314608]
        automated match to d4gpaa_
        complexed with nag, so4
      3. 2271313Domain d5fwxc_: 5fwx C: [314618]
        automated match to d3hsyb_
        complexed with nag, so4
      4. 2272095Domain d5fwxa_: 5fwx A: [315396]
        automated match to d3hsyb_
        complexed with nag, so4
    5. Domains for 5fwy:
      1. 2271230Domain d5fwyb1: 5fwy B:2-381 [314535]
        Other proteins in same PDB: d5fwyb2
        automated match to d3o21a_
        complexed with gol, nag, so4
      2. 2271251Domain d5fwyd_: 5fwy D: [314556]
        Other proteins in same PDB: d5fwyb2
        automated match to d3o21a_
        complexed with gol, nag, so4
      3. 2271254Domain d5fwyc_: 5fwy C: [314559]
        Other proteins in same PDB: d5fwyb2
        automated match to d3hsyb_
        complexed with gol, nag, so4
      4. 2271257Domain d5fwya_: 5fwy A: [314562]
        Other proteins in same PDB: d5fwyb2
        automated match to d3hsyb_
        complexed with gol, nag, so4
  7. 2143979Rhizobium meliloti (Sinorhizobium meliloti) [TaxId:382] [188703] (1 PDB entry)
  8. 2143982Streptobacillus moniliformis [TaxId:519441] [271603] (1 PDB entry)
  9. 2143984Thermoanaerobacter tengcongensis [TaxId:119072] [187869] (1 PDB entry)
  10. 2143987Yersinia pestis [TaxId:214092] [226264] (2 PDB entries)
    1. Domain for 3t95:
    2. Domain for 5kws:
  11. 2294869Salmonella enterica [TaxId:90370] [338170] (1 PDB entry)

More info for Protein automated matches from c.93.1.1: L-arabinose binding protein-like

Timeline for Protein automated matches from c.93.1.1: L-arabinose binding protein-like: