Lineage for Protein: automated matches

  1. Root: SCOPe 2.05
  2. 1755445Class b: All beta proteins [48724] (176 folds)
  3. 1799770Fold b.60: Lipocalins [50813] (1 superfamily)
    barrel, closed or opened; n=8, S=12; meander
  4. 1799771Superfamily b.60.1: Lipocalins [50814] (10 families) (S)
    bind hydrophobic ligands in their interior
  5. 1800288Family b.60.1.2: Fatty acid binding protein-like [50847] (18 proteins)
    ten-stranded meander beta-sheet folded upon itself
    relates to the common fold by opening the barrel and insertion of beta-hairpin
  6. 1800547Protein automated matches [190295] (6 species)
    not a true protein

Species:

  1. 1800548Axolotl (Ambystoma mexicanum) [TaxId:8296] [187103] (1 PDB entry)
  2. 1800550Eel (Anguilla japonica) [TaxId:7937] [197394] (3 PDB entries)
    1. Domains for 4i3b:
      1. 1800551Domain d4i3ba_: 4i3b A: [197395]
        automated match to d1fdqa_
        complexed with bla, peg
      2. 1800552Domain d4i3bb_: 4i3b B: [202525]
        automated match to d4i3ba_
        complexed with bla, peg
      3. 1800553Domain d4i3bc_: 4i3b C: [202526]
        automated match to d4i3ba_
        complexed with bla, peg
      4. 1800554Domain d4i3bd_: 4i3b D: [202527]
        automated match to d4i3ba_
        complexed with bla, peg
      5. 1800555Domain d4i3be_: 4i3b E: [202528]
        automated match to d4i3ba_
        complexed with bla, peg
      6. 1800556Domain d4i3bf_: 4i3b F: [202529]
        automated match to d4i3ba_
        complexed with bla, peg
    2. Domains for 4i3c:
      1. 1800557Domain d4i3ca_: 4i3c A: [197396]
        automated match to d1fdqa_
        complexed with bla; mutant
      2. 1800558Domain d4i3cb_: 4i3c B: [202530]
        automated match to d4i3ca_
        complexed with bla; mutant
    3. Domains for 4i3d:
      1. 1800559Domain d4i3da_: 4i3d A: [197397]
        automated match to d1fdqa_
        complexed with bla; mutant
      2. 1800560Domain d4i3db_: 4i3d B: [202531]
        automated match to d4i3da_
        complexed with bla; mutant
      3. 1800561Domain d4i3dc_: 4i3d C: [202532]
        automated match to d4i3da_
        complexed with bla; mutant
      4. 1800562Domain d4i3dd_: 4i3d D: [202533]
        automated match to d4i3da_
        complexed with bla; mutant
  3. 1800563Human (Homo sapiens) [TaxId:9606] [187133] (24 PDB entries)
    1. Domain for 2mo5:
    2. Domain for 2rcq:
    3. Domain for 2rct:
    4. Domain for 2wut:
    5. Domains for 3rsw:
      1. 1800599Domain d3rswa_: 3rsw A: [216040]
        automated match to d2hnxa_
      2. 1800600Domain d3rswb_: 3rsw B: [216041]
        automated match to d1hmsa_
    6. Domain for 3wvm:
    7. Domain for 3wxq:
    8. Domains for 4a1h:
      1. 1800595Domain d4a1ha_: 4a1h A: [201392]
        automated match to d4a1hc_
        complexed with cl, gol, plm; mutant
      2. 1800596Domain d4a1hb_: 4a1h B: [201393]
        automated match to d4a1hc_
        complexed with cl, gol, plm; mutant
      3. 1800597Domain d4a1hc_: 4a1h C: [193511]
        automated match to d2wuta_
        complexed with cl, gol, plm; mutant
    9. Domains for 4a1y:
      1. 1800566Domain d4a1ya_: 4a1y A: [201394]
        automated match to d4a1yc_
        complexed with cl, plm; mutant
      2. 1800567Domain d4a1yb_: 4a1y B: [194583]
        automated match to d2wuta_
        complexed with cl, plm; mutant
      3. 1800568Domain d4a1yc_: 4a1y C: [194582]
        automated match to d2wuta_
        complexed with cl, plm; mutant
      4. 1800569Domain d4a1yd_: 4a1y D: [201395]
        automated match to d4a1yc_
        complexed with cl, plm; mutant
    10. Domain for 4a8z:
    11. Domains for 4azm:
      1. 1800601Domain d4azma_: 4azm A: [219223]
        automated match to d1b56a_
        complexed with gol, t4b
      2. 1800602Domain d4azmb_: 4azm B: [219224]
        automated match to d1b56a_
        complexed with gol, t4b
    12. Domains for 4azr:
      1. 1800603Domain d4azra_: 4azr A: [219230]
        automated match to d1b56a_
        complexed with a9m, cl
      2. 1800604Domain d4azrb_: 4azr B: [219231]
        automated match to d1b56a_
        complexed with a9m, cl
    13. Domain for 4bvm:
    14. Domain for 4d6a:
    15. Domain for 4d6b:
    16. Domains for 4ede:
      1. 1800576Domain d4edea_: 4ede A: [194192]
        automated match to d2rcta_
        complexed with act, ret; mutant
      2. 1800577Domain d4edeb_: 4ede B: [194191]
        automated match to d2rcta_
        complexed with act, ret; mutant
    17. Domains for 4eej:
      1. 1800578Domain d4eeja_: 4eej A: [194190]
        automated match to d2rcta_
        complexed with act, ret; mutant
      2. 1800579Domain d4eejb_: 4eej B: [201833]
        automated match to d4eeja_
        complexed with act, ret; mutant
    18. Domains for 4efg:
      1. 1800581Domain d4efga_: 4efg A: [201838]
        automated match to d4efgb_
        complexed with act, ret; mutant
      2. 1800582Domain d4efgb_: 4efg B: [194188]
        automated match to d2rcta_
        complexed with act, ret; mutant
    19. Domains for 4exz:
      1. 1800589Domain d4exza_: 4exz A: [194187]
        automated match to d2rcta_
        complexed with act, ret; mutant
      2. 1800590Domain d4exzb_: 4exz B: [194189]
        automated match to d2rcta_
        complexed with act, ret; mutant
    20. Domains for 4gkc:
      1. 1800572Domain d4gkca_: 4gkc A: [202270]
        automated match to d4gkcb_
        complexed with ret; mutant
      2. 1800573Domain d4gkcb_: 4gkc B: [194185]
        automated match to d2rcta_
        complexed with ret; mutant
    21. Domains for 4qyn:
      1. 1800574Domain d4qyna_: 4qyn A: [268669]
        automated match to d2rcta_
        complexed with act, rtl
      2. 1800575Domain d4qynb_: 4qyn B: [268668]
        automated match to d2rcta_
        complexed with act, rtl
    22. Domains for 4qyp:
      1. 1800591Domain d4qypa_: 4qyp A: [261556]
        automated match to d2rcta_
        complexed with act, ret
      2. 1800592Domain d4qypb_: 4qyp B: [261554]
        automated match to d2rcta_
        complexed with act, ret
      3. 1800593Domain d4qypc_: 4qyp C: [263788]
        automated match to d2rcta_
        complexed with act, ret
      4. 1800594Domain d4qypd_: 4qyp D: [263789]
        automated match to d2rcta_
        complexed with act, ret
    23. Domains for 4ruu:
      1. 1800583Domain d4ruua_: 4ruu A: [261581]
        automated match to d4exza_
        complexed with act, ret; mutant
      2. 1800584Domain d4ruub_: 4ruu B: [261582]
        automated match to d4exza_
        complexed with act, ret; mutant
    24. Domain for 4wbk:
  4. 1800606Mouse (Mus musculus) [TaxId:10090] [226737] (4 PDB entries)
    1. Domains for 4azn:
      1. 1800610Domain d4azna_: 4azn A: [219225]
        automated match to d1b56a_
      2. 1800611Domain d4aznb_: 4azn B: [219226]
        automated match to d1b56a_
    2. Domain for 4azo:
    3. Domain for 4azp:
    4. Domain for 4azq:
  5. 1800612Pygoscelis papua [TaxId:30457] [275573] (2 PDB entries)
    1. Domains for 5bvq:
      1. 1800613Domain d5bvqa_: 5bvq A: [275577]
        automated match to d4nnsa_
      2. 1800614Domain d5bvqb_: 5bvq B: [275574]
        automated match to d4nnsa_
    2. Domains for 5bvs:
      1. 1800615Domain d5bvsa_: 5bvs A: [275576]
        automated match to d4nnsa_
        complexed with eic
      2. 1800616Domain d5bvsb_: 5bvs B: [275575]
        automated match to d4nnsa_
        complexed with eic
  6. 1800617Zebrafish (Danio rerio) [TaxId:7955] [188008] (3 PDB entries)
    1. Domain for 2qo4:
    2. Domain for 2qo5:
    3. Domain for 2qo6:

More info for Protein automated matches from b.60.1.2: Fatty acid binding protein-like

Timeline for Protein automated matches from b.60.1.2: Fatty acid binding protein-like: