Lineage for Protein: automated matches

  1. Root: SCOPe 2.06
  2. 2017114Class b: All beta proteins [48724] (177 folds)
  3. 2062521Fold b.60: Lipocalins [50813] (1 superfamily)
    barrel, closed or opened; n=8, S=12; meander
  4. 2062522Superfamily b.60.1: Lipocalins [50814] (10 families) (S)
    bind hydrophobic ligands in their interior
  5. 2063049Family b.60.1.2: Fatty acid binding protein-like [50847] (18 protein domains)
    ten-stranded meander beta-sheet folded upon itself
    relates to the common fold by opening the barrel and insertion of beta-hairpin
  6. 2063324Protein automated matches [190295] (6 species)
    not a true protein

Species:

  1. 2063325Axolotl (Ambystoma mexicanum) [TaxId:8296] [187103] (1 PDB entry)
  2. 2063327Eel (Anguilla japonica) [TaxId:7937] [197394] (3 PDB entries)
    1. Domains for 4i3b:
      1. 2063328Domain d4i3ba_: 4i3b A: [197395]
        automated match to d1fdqa_
        complexed with blr, peg
      2. 2063329Domain d4i3bb_: 4i3b B: [202525]
        automated match to d4i3ba_
        complexed with blr, peg
      3. 2063330Domain d4i3bc_: 4i3b C: [202526]
        automated match to d4i3ba_
        complexed with blr, peg
      4. 2063331Domain d4i3bd_: 4i3b D: [202527]
        automated match to d4i3ba_
        complexed with blr, peg
      5. 2063332Domain d4i3be_: 4i3b E: [202528]
        automated match to d4i3ba_
        complexed with blr, peg
      6. 2063333Domain d4i3bf_: 4i3b F: [202529]
        automated match to d4i3ba_
        complexed with blr, peg
    2. Domains for 4i3c:
      1. 2063334Domain d4i3ca_: 4i3c A: [197396]
        automated match to d1fdqa_
        complexed with blr; mutant
      2. 2063335Domain d4i3cb_: 4i3c B: [202530]
        automated match to d4i3ca_
        complexed with blr; mutant
    3. Domains for 4i3d:
      1. 2063336Domain d4i3da_: 4i3d A: [197397]
        automated match to d1fdqa_
        complexed with blr; mutant
      2. 2063337Domain d4i3db_: 4i3d B: [202531]
        automated match to d4i3da_
        complexed with blr; mutant
      3. 2063338Domain d4i3dc_: 4i3d C: [202532]
        automated match to d4i3da_
        complexed with blr; mutant
      4. 2063339Domain d4i3dd_: 4i3d D: [202533]
        automated match to d4i3da_
        complexed with blr; mutant
  3. 2063340Human (Homo sapiens) [TaxId:9606] [187133] (57 PDB entries)
    1. Domain for 2rcq:
    2. Domain for 2rct:
    3. Domain for 2wut:
    4. Domains for 4a1h:
      1. 2063377Domain d4a1ha1: 4a1h A:0-131 [201392]
        Other proteins in same PDB: d4a1ha2, d4a1hb2, d4a1hc2
        automated match to d4a1hc_
        complexed with cl, gol, plm; mutant
      2. 2063378Domain d4a1hb1: 4a1h B:0-131 [201393]
        Other proteins in same PDB: d4a1ha2, d4a1hb2, d4a1hc2
        automated match to d4a1hc_
        complexed with cl, gol, plm; mutant
      3. 2063379Domain d4a1hc1: 4a1h C:0-131 [193511]
        Other proteins in same PDB: d4a1ha2, d4a1hb2, d4a1hc2
        automated match to d2wuta_
        complexed with cl, gol, plm; mutant
    5. Domains for 4a1y:
      1. 2063342Domain d4a1ya1: 4a1y A:0-131 [201394]
        Other proteins in same PDB: d4a1ya2, d4a1yb2, d4a1yc2, d4a1yd2
        automated match to d4a1yc_
        complexed with cl, plm; mutant
      2. 2063343Domain d4a1yb1: 4a1y B:0-131 [194583]
        Other proteins in same PDB: d4a1ya2, d4a1yb2, d4a1yc2, d4a1yd2
        automated match to d2wuta_
        complexed with cl, plm; mutant
      3. 2063344Domain d4a1yc1: 4a1y C:0-131 [194582]
        Other proteins in same PDB: d4a1ya2, d4a1yb2, d4a1yc2, d4a1yd2
        automated match to d2wuta_
        complexed with cl, plm; mutant
      4. 2063345Domain d4a1yd1: 4a1y D:0-131 [201395]
        Other proteins in same PDB: d4a1ya2, d4a1yb2, d4a1yc2, d4a1yd2
        automated match to d4a1yc_
        complexed with cl, plm; mutant
    6. Domain for 4a8z:
    7. Domains for 4azm:
      1. 2063381Domain d4azma1: 4azm A:1-134 [219223]
        Other proteins in same PDB: d4azma2
        automated match to d1b56a_
        complexed with gol, t4b
      2. 2063382Domain d4azmb_: 4azm B: [219224]
        Other proteins in same PDB: d4azma2
        automated match to d1b56a_
        complexed with gol, t4b
    8. Domains for 4azr:
      1. 2063383Domain d4azra1: 4azr A:1-134 [219230]
        Other proteins in same PDB: d4azra2, d4azrb2
        automated match to d1b56a_
        complexed with a9m, cl
      2. 2063384Domain d4azrb1: 4azr B:1-134 [219231]
        Other proteins in same PDB: d4azra2, d4azrb2
        automated match to d1b56a_
        complexed with a9m, cl
    9. Domain for 4bvm:
    10. Domain for 4d6a:
    11. Domain for 4d6b:
    12. Domains for 4ede:
      1. 2063352Domain d4edea_: 4ede A: [194192]
        automated match to d2rcta_
        complexed with act, ret; mutant
      2. 2063353Domain d4edeb_: 4ede B: [194191]
        automated match to d2rcta_
        complexed with act, ret; mutant
    13. Domains for 4eej:
      1. 2063354Domain d4eeja_: 4eej A: [194190]
        automated match to d2rcta_
        complexed with act, ret; mutant
      2. 2063355Domain d4eejb_: 4eej B: [201833]
        automated match to d4eeja_
        complexed with act, ret; mutant
    14. Domains for 4efg:
      1. 2063356Domain d4efga_: 4efg A: [201838]
        automated match to d4efgb_
        complexed with act, ret; mutant
      2. 2063357Domain d4efgb_: 4efg B: [194188]
        automated match to d2rcta_
        complexed with act, ret; mutant
    15. Domains for 4exz:
      1. 2063367Domain d4exza_: 4exz A: [194187]
        automated match to d2rcta_
        complexed with act, ret; mutant
      2. 2063368Domain d4exzb_: 4exz B: [194189]
        automated match to d2rcta_
        complexed with act, ret; mutant
    16. Domains for 4gkc:
      1. 2063348Domain d4gkca_: 4gkc A: [202270]
        automated match to d4gkcb_
        complexed with ret; mutant
      2. 2063349Domain d4gkcb_: 4gkc B: [194185]
        automated match to d2rcta_
        complexed with ret; mutant
    17. Domains for 4qyn:
      1. 2063350Domain d4qyna_: 4qyn A: [268669]
        automated match to d2rcta_
        complexed with act, rtl
      2. 2063351Domain d4qynb_: 4qyn B: [268668]
        automated match to d2rcta_
        complexed with act, rtl
    18. Domains for 4qyp:
      1. 2063369Domain d4qypa_: 4qyp A: [261556]
        automated match to d2rcta_
        complexed with act, ret
      2. 2063370Domain d4qypb_: 4qyp B: [261554]
        automated match to d2rcta_
        complexed with act, ret
      3. 2063371Domain d4qypc_: 4qyp C: [263788]
        automated match to d2rcta_
        complexed with act, ret
      4. 2063372Domain d4qypd_: 4qyp D: [263789]
        automated match to d2rcta_
        complexed with act, ret
    19. Domains for 4qzt:
      1. 2063373Domain d4qzta_: 4qzt A: [309245]
        automated match to d2rcta_
        complexed with act, rtl
      2. 2063374Domain d4qztb_: 4qzt B: [309246]
        automated match to d2rcta_
        complexed with act, rtl
      3. 2063375Domain d4qztc_: 4qzt C: [309247]
        automated match to d2rcta_
        complexed with act, rtl
      4. 2063376Domain d4qztd_: 4qzt D: [309248]
        automated match to d2rcta_
        complexed with act, rtl
    20. Domains for 4qzu:
      1. 2063360Domain d4qzua_: 4qzu A: [309249]
        automated match to d2rcta_
        complexed with act, gol, rtl
      2. 2063361Domain d4qzub_: 4qzu B: [309250]
        automated match to d2rcta_
        complexed with act, gol, rtl
      3. 2063362Domain d4qzuc_: 4qzu C: [309251]
        automated match to d2rcta_
        complexed with act, gol, rtl
      4. 2063363Domain d4qzud_: 4qzu D: [309252]
        automated match to d2rcta_
        complexed with act, gol, rtl
    21. Domains for 4ruu:
      1. 2063358Domain d4ruua_: 4ruu A: [261581]
        automated match to d4exza_
        complexed with act, ret; mutant
      2. 2063359Domain d4ruub_: 4ruu B: [261582]
        automated match to d4exza_
        complexed with act, ret; mutant
    22. Domains for 4zcb:
      1. 2272895Domain d4zcbb_: 4zcb B: [316196]
        automated match to d4ruua_
        mutant
      2. 2272899Domain d4zcba_: 4zcb A: [316200]
        automated match to d4ruua_
        mutant
    23. Domains for 4zgu:
      1. 2274993Domain d4zgub_: 4zgu B: [318294]
        automated match to d4zcbb_
        complexed with act
      2. 2275014Domain d4zgua_: 4zgu A: [318315]
        automated match to d4zcbb_
        complexed with act
      3. 2275015Domain d4zguc_: 4zgu C: [318316]
        automated match to d4zcbb_
        complexed with act
      4. 2275024Domain d4zgud_: 4zgu D: [318325]
        automated match to d4zcbb_
        complexed with act
    24. Domain for 4zh6:
    25. Domain for 4zh9:
    26. Domains for 4zj0:
      1. 2274029Domain d4zj0a_: 4zj0 A: [317330]
        automated match to d4zcbb_
        complexed with act, ret
      2. 2274031Domain d4zj0b_: 4zj0 B: [317332]
        automated match to d4zcbb_
        complexed with act, ret
    27. Domains for 4zr2:
      1. 2274986Domain d4zr2b_: 4zr2 B: [318287]
        automated match to d4zcbb_
        complexed with act, ret; mutant
      2. 2275020Domain d4zr2a_: 4zr2 A: [318321]
        automated match to d4zcbb_
        complexed with act, ret; mutant
    28. Domain for 5d45:
    29. Domain for 5d47:
    30. Domain for 5d48:
    31. Domain for 5d4a:
    32. Domains for 5dg4:
      1. 2279680Domain d5dg4b_: 5dg4 B: [322981]
        automated match to d4zcbb_
        complexed with act
      2. 2279681Domain d5dg4d_: 5dg4 D: [322982]
        automated match to d4zcbb_
        complexed with act
      3. 2279687Domain d5dg4c_: 5dg4 C: [322988]
        automated match to d4zcbb_
        complexed with act
      4. 2279762Domain d5dg4a_: 5dg4 A: [323063]
        automated match to d4zcbb_
        complexed with act
    33. Domains for 5dpq:
      1. 2279233Domain d5dpqb_: 5dpq B: [322534]
        automated match to d4zcbb_
        complexed with act; mutant
      2. 2279283Domain d5dpqa_: 5dpq A: [322584]
        automated match to d4zcbb_
        complexed with act; mutant
    34. Domain for 5edb:
    35. Domain for 5edc:
    36. Domains for 5f58:
      1. 2283605Domain d5f58a_: 5f58 A: [326906]
        automated match to d4ruua_
        complexed with act, ret; mutant
      2. 2283720Domain d5f58b_: 5f58 B: [327021]
        automated match to d4ruua_
        complexed with act, ret; mutant
    37. Domains for 5f6b:
      1. 2283571Domain d5f6bb_: 5f6b B: [326872]
        automated match to d4ruua_
        complexed with act, ret; mutant
      2. 2283593Domain d5f6ba_: 5f6b A: [326894]
        automated match to d4ruua_
        complexed with act, ret; mutant
    38. Domains for 5f7g:
      1. 2283813Domain d5f7ga_: 5f7g A: [327114]
        automated match to d4ruua_
        complexed with act, ret; mutant
      2. 2283848Domain d5f7gb_: 5f7g B: [327149]
        automated match to d4ruua_
        complexed with act, ret; mutant
    39. Domains for 5fen:
      1. 2284010Domain d5fenb_: 5fen B: [327311]
        automated match to d4ruua_
        complexed with act, ret; mutant
      2. 2284013Domain d5fena_: 5fen A: [327314]
        automated match to d4ruua_
        complexed with act, ret; mutant
    40. Domains for 5ffh:
      1. 2284014Domain d5ffha_: 5ffh A: [327315]
        automated match to d4efga_
        complexed with act, ret; mutant
      2. 2284018Domain d5ffhb_: 5ffh B: [327319]
        automated match to d4efga_
        complexed with act, ret; mutant
    41. Domain for 5h8t:
    42. Domain for 5h9a:
    43. Domain for 5ha1:
    44. Domain for 5hbs:
    45. Domain for 5hz6:
    46. Domain for 5hz8:
    47. Domains for 5hzq:
      1. 2274695Domain d5hzqb_: 5hzq B: [317996]
        Other proteins in same PDB: d5hzqa2
        automated match to d1vyfa_
        complexed with gol, ywz
      2. 2274703Domain d5hzqa1: 5hzq A:0-137 [318004]
        Other proteins in same PDB: d5hzqa2
        automated match to d1vyfa_
        complexed with gol, ywz
    48. Domain for 5ljb:
    49. Domain for 5ljc:
    50. Domain for 5ljd:
    51. Domain for 5lje:
    52. Domain for 5ljg:
    53. Domain for 5ljh:
    54. Domain for 5ljk:
    55. Domains for 5u6g:
      1. 2297006Domain d5u6gk_: 5u6g K: [340307]
        automated match to d4zcbb_
        complexed with ret; mutant
      2. 2297008Domain d5u6gl_: 5u6g L: [340309]
        automated match to d4zcbb_
        complexed with ret; mutant
      3. 2297034Domain d5u6ge_: 5u6g E: [340335]
        automated match to d4zcbb_
        complexed with ret; mutant
      4. 2297035Domain d5u6ga_: 5u6g A: [340336]
        automated match to d4zcbb_
        complexed with ret; mutant
      5. 2297047Domain d5u6gh_: 5u6g H: [340348]
        automated match to d4zcbb_
        complexed with ret; mutant
      6. 2297048Domain d5u6gg_: 5u6g G: [340349]
        automated match to d4zcbb_
        complexed with ret; mutant
      7. 2297052Domain d5u6gc_: 5u6g C: [340353]
        automated match to d4zcbb_
        complexed with ret; mutant
      8. 2297053Domain d5u6gi_: 5u6g I: [340354]
        automated match to d4zcbb_
        complexed with ret; mutant
      9. 2297062Domain d5u6gj_: 5u6g J: [340363]
        automated match to d4zcbb_
        complexed with ret; mutant
      10. 2297080Domain d5u6gf_: 5u6g F: [340381]
        automated match to d4zcbb_
        complexed with ret; mutant
      11. 2297151Domain d5u6gd_: 5u6g D: [340452]
        automated match to d4zcbb_
        complexed with ret; mutant
      12. 2297238Domain d5u6gb_: 5u6g B: [340539]
        automated match to d4zcbb_
        complexed with ret; mutant
    56. Domains for 5ura:
      1. 2294970Domain d5urab1: 5ura B:1-132 [338271]
        Other proteins in same PDB: d5uraa2, d5urab2, d5urac2, d5urad2
        automated match to d5bvqa_
        complexed with 8ks, so4
      2. 2294980Domain d5urac1: 5ura C:1-132 [338281]
        Other proteins in same PDB: d5uraa2, d5urab2, d5urac2, d5urad2
        automated match to d5bvqa_
        complexed with 8ks, so4
      3. 2294986Domain d5uraa1: 5ura A:1-132 [338287]
        Other proteins in same PDB: d5uraa2, d5urab2, d5urac2, d5urad2
        automated match to d5bvqa_
        complexed with 8ks, so4
      4. 2295005Domain d5urad1: 5ura D:1-132 [338306]
        Other proteins in same PDB: d5uraa2, d5urab2, d5urac2, d5urad2
        automated match to d5bvqa_
        complexed with 8ks, so4
    57. Domain for 6at8:
  4. 2063385Mouse (Mus musculus) [TaxId:10090] [226737] (4 PDB entries)
    1. Domains for 4azn:
      1. 2063389Domain d4azna1: 4azn A:1-134 [219225]
        Other proteins in same PDB: d4azna2, d4aznb2
        automated match to d1b56a_
      2. 2063390Domain d4aznb1: 4azn B:1-135 [219226]
        Other proteins in same PDB: d4azna2, d4aznb2
        automated match to d1b56a_
    2. Domain for 4azo:
    3. Domain for 4azp:
    4. Domain for 4azq:
  5. 2063391Pygoscelis papua [TaxId:30457] [275573] (2 PDB entries)
    1. Domains for 5bvq:
      1. 2063392Domain d5bvqa_: 5bvq A: [275577]
        automated match to d4nnsa_
      2. 2063393Domain d5bvqb_: 5bvq B: [275574]
        automated match to d4nnsa_
    2. Domains for 5bvs:
      1. 2063394Domain d5bvsa_: 5bvs A: [275576]
        automated match to d4nnsa_
        complexed with eic
      2. 2063395Domain d5bvsb_: 5bvs B: [275575]
        automated match to d4nnsa_
        complexed with eic
  6. 2063396Zebrafish (Danio rerio) [TaxId:7955] [188008] (3 PDB entries)
    1. Domain for 2qo4:
    2. Domain for 2qo5:
    3. Domain for 2qo6:

More info for Protein automated matches from b.60.1.2: Fatty acid binding protein-like

Timeline for Protein automated matches from b.60.1.2: Fatty acid binding protein-like: