Species:

1. Aquifex aeolicus [TaxId:224324] [194332] (1 PDB entry)

   • Domains for 2ekc:

     1. Domain d2ekca_: 2ekc A: [197882] automated match to d2ekcb_

     2. Domain d2ekcb_: 2ekc B: [194333] automated match to d1wxja_

2. Archaeoglobus fulgidus [TaxId:2234] [228125] (2 PDB entries)

   1. Domains for 4muz:

      1. Domain d4muza_: 4muz A: [228126] automated match to d3f4wa_ complexed with bmp, gol

      2. Domain d4muzb_: 4muz B: [235690] automated match to d4muza_ complexed with bmp, gol

   2. Domains for 4n2y:

      1. Domain d4n2ya_: 4n2y A: [235716] automated match to d4muza_ complexed with gol

      2. Domain d4n2yb_: 4n2y B: [235720] automated match to d4muza_ complexed with gol

      3. Domain d4n2yc_: 4n2y C: [235719] automated match to d4muza_ complexed with gol

      4. Domain d4n2yd_: 4n2y D: [235721] automated match to d4muza_ complexed with gol

3. Baker's yeast (Saccharomyces cerevisiae) [TaxId:4932] [255829] (4 PDB entries)

   1. Domains for 3fem:

      1. Domain d3fema_: 3fem A: [246093] automated match to d2nv2i_

      2. Domain d3femb_: 3fem B: [246094] automated match to d2nv2i_

      3. Domain d3femc_: 3fem C: [246095] automated match to d2nv2i_

      4. Domain d3femd_: 3fem D: [246096] automated match to d2nv2i_

      5. Domain d3feme_: 3fem E: [246097] automated match to d2nv2i_

      6. Domain d3femf_: 3fem F: [246098] automated match to d2nv2i_

   2. Domains for 3o05:

      1. Domain d3o05a_: 3o05 A: [248111] automated match to d1znna1 complexed with plp

      2. Domain d3o05b_: 3o05 B: [248112] automated match to d1znna1 complexed with plp

      3. Domain d3o05c_: 3o05 C: [248113] automated match to d1znna1 complexed with plp

   3. Domains for 3o06:

      1. Domain d3o06a_: 3o06 A: [248114] automated match to d1znna1

      2. Domain d3o06b_: 3o06 B: [248115] automated match to d1znna1

      3. Domain d3o06c_: 3o06 C: [248116] automated match to d1znna1

   4. Domains for 3o07:

      1. Domain d3o07a_: 3o07 A: [248117] automated match to d1znna1 complexed with 1gp

      2. Domain d3o07b_: 3o07 B: [248118] automated match to d1znna1 complexed with 1gp

      3. Domain d3o07c_: 3o07 C: [248119] automated match to d1znna1 complexed with 1gp

4. Brucella melitensis [TaxId:359391] [189740] (1 PDB entry)

   • Domains for 3tsm:

     1. Domain d3tsma_: 3tsm A: [185934] automated match to d1jcmp_ complexed with gol, so4, unl

     2. Domain d3tsmb_: 3tsm B: [185935] automated match to d1jcmp_ complexed with gol, so4, unl

5. Campylobacter jejuni [TaxId:192222] [194783] (3 PDB entries)

   1. Domains for 3ru6:

      1. Domain d3ru6a_: 3ru6 A: [249207] automated match to d3tfxa_ complexed with cl, iod

      2. Domain d3ru6b_: 3ru6 B: [249208] automated match to d3tfxa_ complexed with cl, iod

      3. Domain d3ru6c_: 3ru6 C: [249209] automated match to d3tfxa_ complexed with cl, iod

      4. Domain d3ru6d_: 3ru6 D: [249210] automated match to d3tfxa_ complexed with cl, iod

   2. Domains for 3tha:

      1. Domain d3thaa_: 3tha A: [216821] automated match to d1wdwa1

      2. Domain d3thab_: 3tha B: [216822] automated match to d1wdwa1

   3. Domain for 4gj1:

      • Domain d4gj1a_: 4gj1 A: [194784] automated match to d2x30a_

6. Clostridium perfringens [TaxId:195102] [260453] (3 PDB entries)

   1. Domains for 4utt:

      1. Domain d4utta_: 4utt A: [260595] automated match to d1yxya1 complexed with act, cl

      2. Domain d4uttb_: 4utt B: [260596] automated match to d1yxya1 complexed with act, cl

      3. Domain d4uttc_: 4utt C: [260601] automated match to d1yxya1 complexed with act, cl

      4. Domain d4uttd_: 4utt D: [260836] automated match to d1yxya1 complexed with act, cl

   2. Domains for 4utu:

      1. Domain d4utua_: 4utu A: [260456] automated match to d1yxya1 complexed with cl, lry

      2. Domain d4utub_: 4utu B: [260838] automated match to d1yxya1 complexed with cl, lry

   3. Domains for 4utw:

      1. Domain d4utwa_: 4utw A: [260454] automated match to d1yxya1 complexed with cl, rfw

      2. Domain d4utwb_: 4utw B: [260837] automated match to d1yxya1 complexed with cl, rfw

      3. Domain d4utwc_: 4utw C: [260455] automated match to d1yxya1 complexed with cl, rfw

7. Coxiella burnetii [TaxId:777] [196137] (1 PDB entry)

   • Domains for 3tr2:

     1. Domain d3tr2a_: 3tr2 A: [200861] automated match to d3tr2b_

     2. Domain d3tr2b_: 3tr2 B: [196139] automated match to d1eixa_

8. Escherichia coli [TaxId:562] [188791] (2 PDB entries)

   1. Domains for 3ct7:

      1. Domain d3ct7a_: 3ct7 A: [173446] automated match to d2flia1 complexed with mg, so4

      2. Domain d3ct7b_: 3ct7 B: [173447] automated match to d2flia1 complexed with mg, so4

      3. Domain d3ct7c_: 3ct7 C: [173448] automated match to d2flia1 complexed with mg, so4

      4. Domain d3ct7d_: 3ct7 D: [173449] automated match to d2flia1 complexed with mg, so4

      5. Domain d3ct7e_: 3ct7 E: [173450] automated match to d2flia1 complexed with mg, so4

      6. Domain d3ct7f_: 3ct7 F: [173451] automated match to d2flia1 complexed with mg, so4

   2. Domains for 3ctl:

      1. Domain d3ctla_: 3ctl A: [173452] automated match to d2flia1 complexed with mg, s6p

      2. Domain d3ctlb_: 3ctl B: [173453] automated match to d2flia1 complexed with mg, s6p

      3. Domain d3ctlc_: 3ctl C: [173454] automated match to d2flia1 complexed with mg, s6p

      4. Domain d3ctld_: 3ctl D: [173455] automated match to d2flia1 complexed with mg, s6p

      5. Domain d3ctle_: 3ctl E: [173456] automated match to d2flia1 complexed with mg, s6p

      6. Domain d3ctlf_: 3ctl F: [173457] automated match to d2flia1 complexed with mg, s6p

9. Francisella tularensis [TaxId:119856] [225740] (1 PDB entry)

   • Domain for 3inp:

     • Domain d3inpa_: 3inp A: [211826] automated match to d2flig_ complexed with cl, so4

10. Histophilus somni [TaxId:205914] [225448] (1 PDB entry)

    • Domains for 3cu2:

      1. Domain d3cu2a_: 3cu2 A: [208951] automated match to d2flie_ complexed with ca, mrd, ni

      2. Domain d3cu2b_: 3cu2 B: [208952] automated match to d2flie_ complexed with ca, mrd, ni

11. Human (Homo sapiens) [TaxId:9606] [189658] (4 PDB entries)

    1. Domains for 3ovp:

       1. Domain d3ovpa_: 3ovp A: [183320] automated match to d1h1ya_ complexed with fe2, xpe

       2. Domain d3ovpb_: 3ovp B: [183321] automated match to d1h1ya_ complexed with fe2, xpe

    2. Domains for 3ovq:

       1. Domain d3ovqa_: 3ovq A: [183322] automated match to d1h1ya_ complexed with 5rp, fe2, xpe

       2. Domain d3ovqb_: 3ovq B: [183323] automated match to d1h1ya_ complexed with 5rp, fe2, xpe

    3. Domains for 3ovr:

       1. Domain d3ovra_: 3ovr A: [183324] automated match to d1h1ya_ complexed with 5sp, fe2, xpe

       2. Domain d3ovrb_: 3ovr B: [183325] automated match to d1h1ya_ complexed with 5sp, fe2, xpe

    4. Domains for 3qc3:

       1. Domain d3qc3a_: 3qc3 A: [184333] automated match to d1h1ya_ complexed with fe, gol, ni, zn

       2. Domain d3qc3b_: 3qc3 B: [184334] automated match to d1h1ya_ complexed with fe, gol, ni, zn

12. Jonesia denitrificans [TaxId:471856] [261320] (1 PDB entry)

    • Domain for 4wui:

      • Domain d4wuia_: 4wui A: [261321] automated match to d4aaja_ complexed with cit

13. Lactobacillus acidophilus [TaxId:1579] [226211] (1 PDB entry)

    • Domains for 3tfx:

      1. Domain d3tfxa_: 3tfx A: [216805] automated match to d3tr2b_

      2. Domain d3tfxb_: 3tfx B: [216806] automated match to d3tr2b_

14. Metallosphaera sedula [TaxId:399549] [226554] (2 PDB entries)

    1. Domains for 3ve7:

       1. Domain d3ve7a_: 3ve7 A: [217783] automated match to d3rlva_ complexed with acy, bmp, so4

       2. Domain d3ve7b_: 3ve7 B: [217784] automated match to d3rlva_ complexed with acy, bmp, so4

    2. Domains for 3ve9:

       1. Domain d3ve9a_: 3ve9 A: [217785] automated match to d3rlva_ complexed with gol, peg

       2. Domain d3ve9b_: 3ve9 B: [217786] automated match to d3rlva_ complexed with gol, peg

15. Methanocaldococcus jannaschii [TaxId:243232] [235508] (2 PDB entries)

    1. Domains for 4lui:

       1. Domain d4luia_: 4lui A: [253700] automated match to d4lujb_ complexed with cl

       2. Domain d4luib_: 4lui B: [253701] automated match to d4lujb_ complexed with cl

    2. Domains for 4luj:

       1. Domain d4luja_: 4luj A: [240503] automated match to d4lujb_ complexed with bmp

       2. Domain d4lujb_: 4luj B: [235509] automated match to d4muza_ complexed with bmp

16. Plasmodium berghei [TaxId:5821] [256175] (2 PDB entries)

    1. Domains for 4adt:

       1. Domain d4adta_: 4adt A: [251004] automated match to d2nv2i_ complexed with po4

       2. Domain d4adtb_: 4adt B: [251005] automated match to d2nv2i_ complexed with po4

    2. Domains for 4adu:

       1. Domain d4adua_: 4adu A: [251006] automated match to d2nv2i_ complexed with edo, r5p

       2. Domain d4adub_: 4adu B: [251007] automated match to d2nv2i_ complexed with edo, r5p

17. Pyrococcus furiosus [TaxId:2261] [226511] (1 PDB entry)

    • Domain for 4aaj:

      • Domain d4aaja_: 4aaj A: [218749] automated match to d1nsja_ complexed with so4

18. Salmonella enterica [TaxId:90370] [196385] (1 PDB entry)

    • Domains for 3q58:

      1. Domain d3q58a_: 3q58 A: [200286] automated match to d3q58b_ complexed with btb, cl, peg

      2. Domain d3q58b_: 3q58 B: [196386] automated match to d3igsb_ complexed with btb, cl, peg

19. Salmonella typhimurium [TaxId:90371] [189019] (2 PDB entries)

    1. Domains for 3f4w:

       1. Domain d3f4wa_: 3f4w A: [175470] automated match to d1xbxa1 complexed with mli

       2. Domain d3f4wb_: 3f4w B: [175471] automated match to d1xbxa1 complexed with mli

    2. Domains for 3igs:

       1. Domain d3igsa_: 3igs A: [178315] automated match to d1yxya1 complexed with 16g, cl, so4

       2. Domain d3igsb_: 3igs B: [178316] automated match to d1yxya1 complexed with 16g, cl, so4

20. Streptococcus pyogenes [TaxId:1314] [187097] (1 PDB entry)

    • Domains for 2fli:

      1. Domain d2flib_: 2fli B: [133715] Other proteins in same PDB: d2flia1 automated match to d1rpxa_ complexed with dx5, zn

      2. Domain d2flic_: 2fli C: [133716] Other proteins in same PDB: d2flia1 automated match to d1rpxa_ complexed with dx5, zn

      3. Domain d2flid_: 2fli D: [133717] Other proteins in same PDB: d2flia1 automated match to d1rpxa_ complexed with dx5, zn

      4. Domain d2flie_: 2fli E: [133718] Other proteins in same PDB: d2flia1 automated match to d1rpxa_ complexed with dx5, zn

      5. Domain d2flif_: 2fli F: [133719] Other proteins in same PDB: d2flia1 automated match to d1rpxa_ complexed with dx5, zn

      6. Domain d2flig_: 2fli G: [133720] Other proteins in same PDB: d2flia1 automated match to d1rpxa_ complexed with dx5, zn

      7. Domain d2flih_: 2fli H: [133721] Other proteins in same PDB: d2flia1 automated match to d1rpxa_ complexed with dx5, zn

      8. Domain d2flii_: 2fli I: [133722] Other proteins in same PDB: d2flia1 automated match to d1rpxa_ complexed with dx5, zn

      9. Domain d2flij_: 2fli J: [133723] Other proteins in same PDB: d2flia1 automated match to d1rpxa_ complexed with dx5, zn

      10. Domain d2flik_: 2fli K: [133724] Other proteins in same PDB: d2flia1 automated match to d1rpxa_ complexed with dx5, zn

      11. Domain d2flil_: 2fli L: [133725] Other proteins in same PDB: d2flia1 automated match to d1rpxa_ complexed with dx5, zn

21. Sulfolobus solfataricus [TaxId:2287] [225031] (1 PDB entry)

    • Domain for 2c3z:

      • Domain d2c3za_: 2c3z A: [203740] automated match to d1j5ta_ complexed with so4

22. Sulfolobus solfataricus [TaxId:555311] [234306] (2 PDB entries)

    1. Domain for 4dbd:

       • Domain d4dbda_: 4dbd A: [234308] automated match to d3ve7b_ complexed with so4

    2. Domains for 4dbe:

       1. Domain d4dbea_: 4dbe A: [234307] automated match to d3ve7b_ complexed with bmp, gol, so4

       2. Domain d4dbeb_: 4dbe B: [234309] automated match to d3ve7b_ complexed with bmp, gol, so4

23. Toxoplasma gondii [TaxId:5811] [229953] (1 PDB entry)

    • Domains for 4nu7:

      1. Domain d4nu7a_: 4nu7 A: [235819] automated match to d4nu7b_ complexed with cl, so4, zn

      2. Domain d4nu7b_: 4nu7 B: [229954] automated match to d1h1ya_ complexed with cl, so4, zn

      3. Domain d4nu7c_: 4nu7 C: [235825] automated match to d4nu7b_ complexed with cl, so4, zn

      4. Domain d4nu7d_: 4nu7 D: [235824] automated match to d4nu7b_ complexed with cl, so4, zn

24. Vibrio cholerae [TaxId:666] [189015] (2 PDB entries)

    1. Domains for 3ieb:

       1. Domain d3ieba_: 3ieb A: [178266] automated match to d1kv8a_ complexed with gol, so4

       2. Domain d3iebb_: 3ieb B: [178267] automated match to d1kv8a_ complexed with gol, so4

       3. Domain d3iebc_: 3ieb C: [178268] automated match to d1kv8a_ complexed with gol, so4

       4. Domain d3iebd_: 3ieb D: [178269] automated match to d1kv8a_ complexed with gol, so4

       5. Domain d3iebe_: 3ieb E: [178270] automated match to d1kv8a_ complexed with gol, so4

    2. Domains for 3jr2:

       1. Domain d3jr2a_: 3jr2 A: [178713] automated match to d1kv8a_ complexed with edo, gol, mg, so4

       2. Domain d3jr2b_: 3jr2 B: [178714] automated match to d1kv8a_ complexed with edo, gol, mg, so4

       3. Domain d3jr2c_: 3jr2 C: [178715] automated match to d1kv8a_ complexed with edo, gol, mg, so4

       4. Domain d3jr2d_: 3jr2 D: [178716] automated match to d1kv8a_ complexed with edo, gol, mg, so4

More info for Protein automated matches from c.1.2.0: automated matches

Timeline for Protein automated matches from c.1.2.0: automated matches:

• Protein automated matches from c.1.2.0: automated matches first appeared in SCOPe 2.01
  
• Protein automated matches from c.1.2.0: automated matches appears in SCOPe 2.03
  
• Protein automated matches from c.1.2.0: automated matches appears in SCOPe 2.05
  
• Protein automated matches from c.1.2.0: automated matches appears in the current release, SCOPe 2.08