Lineage for Protein: automated matches

  1. Root: SCOPe 2.04
  2. 1510239Class b: All beta proteins [48724] (176 folds)
  3. 1531182Fold b.19: Viral protein domain [49817] (1 superfamily)
    sandwich; 9 strands in 2 sheets; jelly-roll; form trimers
  4. 1531183Superfamily b.19.1: Viral protein domain [49818] (4 families) (S)
    forms homotrimers
  5. 1531228Family b.19.1.2: Influenza hemagglutinin headpiece [49823] (2 proteins)
  6. 1531574Protein automated matches [190291] (23 species)
    not a true protein

Species:

  1. 1531575Influenza a virus (a/canine/colorado/17864/2006(h3n8)) [TaxId:867285] [258569] (1 PDB entry)
  2. 1531577Influenza a virus (a/eq/newmarket/93/(h3n8)) [TaxId:159470] [258548] (2 PDB entries)
    1. Domains for 4unw:
      1. 1531578Domain d4unwa_: 4unw A: [258554]
        automated match to d3hmga_
        complexed with nag
      2. 1531579Domain d4unwe_: 4unw E: [259037]
        automated match to d3hmga_
        complexed with nag
    2. Domains for 4unz:
      1. 1531580Domain d4unzc_: 4unz C: [258549]
        Other proteins in same PDB: d4unzb_
        automated match to d3hmga_
        complexed with nag
      2. 1531581Domain d4unze_: 4unz E: [259035]
        Other proteins in same PDB: d4unzf_
        automated match to d3hmga_
        complexed with nag
  3. 1531582Influenza a virus (a/equine/richmond/1/2007)(h3n8)) [TaxId:560387] [258558] (1 PDB entry)
  4. 1531585Influenza a virus (a/mallard/alberta/35/1976(h1n1)) [TaxId:352520] [255664] (1 PDB entry)
  5. 1531589Influenza a virus (a/mallard/sweden/51/2002 (h10n2)) [TaxId:757360] [256747] (1 PDB entry)
  6. 1531592Influenza a virus (a/netherlands/219/2003(h7n7)) [TaxId:680693] [195111] (3 PDB entries)
    1. Domains for 4dj6:
      1. 1531593Domain d4dj6a_: 4dj6 A: [219789]
        Other proteins in same PDB: d4dj6b_, d4dj6d_, d4dj6f_
        automated match to d4dj8c_
        complexed with nag
      2. 1531594Domain d4dj6c_: 4dj6 C: [219790]
        Other proteins in same PDB: d4dj6b_, d4dj6d_, d4dj6f_
        automated match to d4dj8c_
        complexed with nag
      3. 1531595Domain d4dj6e_: 4dj6 E: [219791]
        Other proteins in same PDB: d4dj6b_, d4dj6d_, d4dj6f_
        automated match to d4dj8c_
        complexed with nag
    2. Domains for 4dj7:
      1. 1531599Domain d4dj7a_: 4dj7 A: [219792]
        Other proteins in same PDB: d4dj7b_, d4dj7d_, d4dj7f_
        automated match to d4dj8c_
        complexed with nag
      2. 1531600Domain d4dj7c_: 4dj7 C: [219793]
        Other proteins in same PDB: d4dj7b_, d4dj7d_, d4dj7f_
        automated match to d4dj8c_
        complexed with nag
      3. 1531601Domain d4dj7e_: 4dj7 E: [219794]
        Other proteins in same PDB: d4dj7b_, d4dj7d_, d4dj7f_
        automated match to d4dj8c_
        complexed with nag
    3. Domains for 4dj8:
      1. 1531596Domain d4dj8a_: 4dj8 A: [195113]
        Other proteins in same PDB: d4dj8b_, d4dj8d_, d4dj8f_
        automated match to d1ti8a1
        complexed with nag, sia
      2. 1531597Domain d4dj8c_: 4dj8 C: [195112]
        Other proteins in same PDB: d4dj8b_, d4dj8d_, d4dj8f_
        automated match to d1ti8a1
        complexed with nag, sia
      3. 1531598Domain d4dj8e_: 4dj8 E: [201716]
        Other proteins in same PDB: d4dj8b_, d4dj8d_, d4dj8f_
        automated match to d4dj8c_
        complexed with nag, sia
  7. 1531602Influenza a virus (a/turkey/turkey/1/2005(h5n1)) [TaxId:375457] [256675] (1 PDB entry)
  8. 1531605Influenza a virus (a/viet nam/1203/2004(h5n1)) [TaxId:284218] [187096] (1 PDB entry)
  9. 1531614Influenza a virus (a/vietnam/1194/2004(h5n1)) [TaxId:644788] [228150] (5 PDB entries)
    1. Domain for 3zpa:
    2. Domain for 4cqp:
    3. Domain for 4cqs:
    4. Domain for 4cqz:
    5. Domain for 4cr0:
  10. 1531620Influenza a virus (a/wdk/jx/12416/2005(h1n1)) [TaxId:666057] [188994] (4 PDB entries)
    1. Domain for 3hto:
    2. Domain for 3htp:
    3. Domain for 3htq:
    4. Domain for 3htt:
  11. 1531625Influenza A virus [TaxId:11320] [187142] (16 PDB entries)
    1. Domain for 2yp2:
    2. Domain for 2yp3:
    3. Domain for 2yp4:
    4. Domain for 2yp5:
    5. Domain for 2yp7:
    6. Domain for 2yp8:
    7. Domain for 2yp9:
    8. Domain for 3eyj:
    9. Domain for 3eyk:
    10. Domains for 3s11:
      1. 1531635Domain d3s11a_: 3s11 A: [185243]
        Other proteins in same PDB: d3s11b_, d3s11d_, d3s11f_
        automated match to d1jsma_
        complexed with gol, nag, tam
      2. 1531636Domain d3s11c_: 3s11 C: [185244]
        Other proteins in same PDB: d3s11b_, d3s11d_, d3s11f_
        automated match to d1jsma_
        complexed with gol, nag, tam
      3. 1531637Domain d3s11e_: 3s11 E: [185245]
        Other proteins in same PDB: d3s11b_, d3s11d_, d3s11f_
        automated match to d1jsma_
        complexed with gol, nag, tam
    11. Domain for 3zp0:
    12. Domain for 3zp1:
    13. Domain for 3zp2:
    14. Domain for 3zp6:
    15. Domain for 3zpb:
    16. Domain for 4uo4:
  12. 1531644Influenza a virus [TaxId:365085] [256811] (1 PDB entry)
  13. 1531648Influenza a virus [TaxId:375457] [193032] (1 PDB entry)
  14. 1531652Influenza A virus [TaxId:387139] [256143] (1 PDB entry)
  15. 1531656Influenza a virus [TaxId:407713] [256807] (1 PDB entry)
  16. 1531658Influenza A virus [TaxId:490450] [189473] (3 PDB entries)
    1. Domains for 3m5g:
      1. 1531662Domain d3m5ga_: 3m5g A: [180862]
        Other proteins in same PDB: d3m5gb_, d3m5gd_, d3m5gf_
        automated match to d1ti8a1
        complexed with nag, peg
      2. 1531663Domain d3m5gc_: 3m5g C: [180863]
        Other proteins in same PDB: d3m5gb_, d3m5gd_, d3m5gf_
        automated match to d1ti8a1
        complexed with nag, peg
      3. 1531664Domain d3m5ge_: 3m5g E: [180864]
        Other proteins in same PDB: d3m5gb_, d3m5gd_, d3m5gf_
        automated match to d1ti8a1
        complexed with nag, peg
    2. Domains for 3m5h:
      1. 1531665Domain d3m5ha_: 3m5h A: [180865]
        Other proteins in same PDB: d3m5hb_, d3m5hd_, d3m5hf_
        automated match to d1ti8a1
        complexed with gol, nag
      2. 1531666Domain d3m5hc_: 3m5h C: [180866]
        Other proteins in same PDB: d3m5hb_, d3m5hd_, d3m5hf_
        automated match to d1ti8a1
        complexed with gol, nag
      3. 1531667Domain d3m5he_: 3m5h E: [180867]
        Other proteins in same PDB: d3m5hb_, d3m5hd_, d3m5hf_
        automated match to d1ti8a1
        complexed with gol, nag
    3. Domains for 3m5j:
      1. 1531659Domain d3m5ja_: 3m5j A: [180868]
        Other proteins in same PDB: d3m5jb_, d3m5jd_, d3m5jf_
        automated match to d1ti8a1
        complexed with gol, nag
      2. 1531660Domain d3m5jc_: 3m5j C: [180869]
        Other proteins in same PDB: d3m5jb_, d3m5jd_, d3m5jf_
        automated match to d1ti8a1
        complexed with gol, nag
      3. 1531661Domain d3m5je_: 3m5j E: [180870]
        Other proteins in same PDB: d3m5jb_, d3m5jd_, d3m5jf_
        automated match to d1ti8a1
        complexed with gol, nag
  17. 1531668Influenza a virus [TaxId:560387] [258567] (1 PDB entry)
  18. 1531671Influenza A virus [TaxId:641501] [256167] (1 PDB entry)
  19. 1531673Influenza a virus [TaxId:644788] [228148] (1 PDB entry)
  20. 1531675Influenza a virus [TaxId:867285] [258560] (1 PDB entry)
  21. 1531678Influenza virus [TaxId:284218] [193030] (3 PDB entries)
    1. Domain for 4bh2:
    2. Domain for 4bh3:
    3. Domain for 4bh4:
  22. 1531682Influenza virus [TaxId:375457] [193026] (2 PDB entries)
    1. Domains for 4bgz:
      1. 1531686Domain d4bgza_: 4bgz A: [201622]
        Other proteins in same PDB: d4bgzb_, d4bgzd_, d4bgzf_
        automated match to d4bgzc_
        complexed with nag, po4
      2. 1531687Domain d4bgzc_: 4bgz C: [193027]
        Other proteins in same PDB: d4bgzb_, d4bgzd_, d4bgzf_
        automated match to d2fk0a1
        complexed with nag, po4
      3. 1531688Domain d4bgze_: 4bgz E: [201623]
        Other proteins in same PDB: d4bgzb_, d4bgzd_, d4bgzf_
        automated match to d4bgzc_
        complexed with nag, po4
    2. Domains for 4bh0:
      1. 1531683Domain d4bh0a_: 4bh0 A: [219487]
        Other proteins in same PDB: d4bh0b_, d4bh0d_, d4bh0f_
        automated match to d4bgzc_
        complexed with nag, po4
      2. 1531684Domain d4bh0c_: 4bh0 C: [219488]
        Other proteins in same PDB: d4bh0b_, d4bh0d_, d4bh0f_
        automated match to d4bgzc_
        complexed with nag, po4
      3. 1531685Domain d4bh0e_: 4bh0 E: [219489]
        Other proteins in same PDB: d4bh0b_, d4bh0d_, d4bh0f_
        automated match to d4bgzc_
        complexed with nag, po4
  23. 1531689Influenza virus [TaxId:644788] [193029] (6 PDB entries)
    1. Domains for 3znk:
      1. 1531699Domain d3znka_: 3znk A: [229359]
        Other proteins in same PDB: d3znkb_, d3znkd_, d3znkf_
        automated match to d4bgxa_
        complexed with epe, nag
      2. 1531700Domain d3znkc_: 3znk C: [229358]
        Other proteins in same PDB: d3znkb_, d3znkd_, d3znkf_
        automated match to d4bgxa_
        complexed with epe, nag
      3. 1531701Domain d3znke_: 3znk E: [229360]
        Other proteins in same PDB: d3znkb_, d3znkd_, d3znkf_
        automated match to d4bgxa_
        complexed with epe, nag
    2. Domains for 3znl:
      1. 1531696Domain d3znla_: 3znl A: [229351]
        Other proteins in same PDB: d3znlb_, d3znld_, d3znlf_
        automated match to d4bgxa_
        complexed with epe, nag
      2. 1531697Domain d3znlc_: 3znl C: [229353]
        Other proteins in same PDB: d3znlb_, d3znld_, d3znlf_
        automated match to d4bgxa_
        complexed with epe, nag
      3. 1531698Domain d3znle_: 3znl E: [229350]
        Other proteins in same PDB: d3znlb_, d3znld_, d3znlf_
        automated match to d4bgxa_
        complexed with epe, nag
    3. Domains for 3znm:
      1. 1531693Domain d3znma_: 3znm A: [229354]
        Other proteins in same PDB: d3znmb_, d3znmd_, d3znmf_
        automated match to d4bgxa_
        complexed with epe, nag
      2. 1531694Domain d3znmc_: 3znm C: [229361]
        Other proteins in same PDB: d3znmb_, d3znmd_, d3znmf_
        automated match to d4bgxa_
        complexed with epe, nag
      3. 1531695Domain d3znme_: 3znm E: [229352]
        Other proteins in same PDB: d3znmb_, d3znmd_, d3znmf_
        automated match to d4bgxa_
        complexed with epe, nag
    4. Domain for 4bgw:
    5. Domain for 4bgx:
    6. Domain for 4bgy:

More info for Protein automated matches from b.19.1.2: Influenza hemagglutinin headpiece

Timeline for Protein automated matches from b.19.1.2: Influenza hemagglutinin headpiece: