Lineage for Protein: automated matches

  1. Root: SCOPe 2.08
  2. 3021034Class f: Membrane and cell surface proteins and peptides [56835] (69 folds)
  3. 3021955Fold f.4: Transmembrane beta-barrels [56924] (7 superfamilies)
    not a true fold, gathers together transmembrane barrels of different (n,S)
    annotated by the SCOP(e) curators as 'not a true fold'
  4. 3022096Superfamily f.4.3: Porins [56935] (5 families) (S)
  5. 3022097Family f.4.3.1: Porin [56936] (2 proteins)
    trimer, one subunit folds into (16,20) barrel
  6. 3022172Protein automated matches [190289] (7 species)
    not a true protein

Species:

  1. 3022173Delftia acidovorans [TaxId:80866] [187093] (2 PDB entries)
    1. Domain for 2fgq:
    2. Domain for 2fgr:
  2. 3022176Enterobacter aerogenes [TaxId:548] [353699] (1 PDB entry)
  3. 3022180Enterobacter cloacae [TaxId:550] [320989] (2 PDB entries)
    1. Domains for 5fvn:
      1. 3022181Domain d5fvna_: 5fvn A: [321033]
        automated match to d2j1na_
        complexed with c8e, ca, dao, ftt, gp1, kdo, myr, po4, so4
      2. 3022182Domain d5fvnb_: 5fvn B: [320992]
        automated match to d2j1na_
        complexed with c8e, ca, dao, ftt, gp1, kdo, myr, po4, so4
      3. 3022183Domain d5fvnc_: 5fvn C: [320990]
        automated match to d2j1na_
        complexed with c8e, ca, dao, ftt, gp1, kdo, myr, po4, so4
      4. 3022184Domain d5fvnd_: 5fvn D: [321060]
        automated match to d2j1na_
        complexed with c8e, ca, dao, ftt, gp1, kdo, myr, po4, so4
      5. 3022185Domain d5fvne_: 5fvn E: [321032]
        automated match to d2j1na_
        complexed with c8e, ca, dao, ftt, gp1, kdo, myr, po4, so4
      6. 3022186Domain d5fvnf_: 5fvn F: [320991]
        automated match to d2j1na_
        complexed with c8e, ca, dao, ftt, gp1, kdo, myr, po4, so4
    2. Domains for 6ene:
      1. 3022187Domain d6enea_: 6ene A: [359535]
        automated match to d2zfga_
        complexed with bog, c8e, so4
      2. 3022188Domain d6eneb_: 6ene B: [359559]
        automated match to d2zfga_
        complexed with bog, c8e, so4
      3. 3022189Domain d6enec_: 6ene C: [359529]
        automated match to d2zfga_
        complexed with bog, c8e, so4
  4. 3022190Escherichia coli [TaxId:562] [187889] (9 PDB entries)
    1. Domains for 2ixw:
      1. 3022206Domain d2ixwa_: 2ixw A: [304082]
        automated match to d2xe3a_
        complexed with oes
      2. 3022207Domain d2ixwb_: 2ixw B: [304083]
        automated match to d2xe3a_
        complexed with oes
      3. 3022208Domain d2ixwc_: 2ixw C: [304084]
        automated match to d2xe3a_
        complexed with oes
    2. Domains for 2ixx:
      1. 3022201Domain d2ixxa_: 2ixx A: [304085]
        automated match to d2xe1a_
        complexed with mha
      2. 3022202Domain d2ixxb_: 2ixx B: [304086]
        automated match to d2xe1a_
        complexed with mha
    3. Domains for 2j1n:
      1. 3022191Domain d2j1na_: 2j1n A: [165803]
        automated match to d1osma_
        complexed with cl, d12, mg
      2. 3022192Domain d2j1nb_: 2j1n B: [165804]
        automated match to d1osma_
        complexed with cl, d12, mg
      3. 3022193Domain d2j1nc_: 2j1n C: [165805]
        automated match to d1osma_
        complexed with cl, d12, mg
    4. Domains for 2j4u:
      1. 3022214Domain d2j4up_: 2j4u P: [165893]
        automated match to d1osma_
      2. 3022215Domain d2j4uq_: 2j4u Q: [165894]
        automated match to d1osma_
      3. 3022216Domain d2j4ur_: 2j4u R: [165895]
        automated match to d1osma_
      4. 3022217Domain d2j4uu_: 2j4u U: [165896]
        automated match to d1osma_
      5. 3022218Domain d2j4uv_: 2j4u V: [165897]
        automated match to d1osma_
      6. 3022219Domain d2j4uw_: 2j4u W: [165898]
        automated match to d1osma_
    5. Domain for 2xe1:
    6. Domains for 2xe2:
      1. 3022203Domain d2xe2a_: 2xe2 A: [170049]
        automated match to d1osma_
        complexed with oes; mutant
      2. 3022204Domain d2xe2b_: 2xe2 B: [170050]
        automated match to d1osma_
        complexed with oes; mutant
      3. 3022205Domain d2xe2c_: 2xe2 C: [170051]
        automated match to d1osma_
        complexed with oes; mutant
    7. Domains for 2xe3:
      1. 3022212Domain d2xe3a_: 2xe3 A: [170052]
        automated match to d1osma_
        complexed with bog
      2. 3022213Domain d2xe3b_: 2xe3 B: [170053]
        automated match to d1osma_
        complexed with bog
    8. Domains for 2xe5:
      1. 3022195Domain d2xe5a_: 2xe5 A: [170054]
        automated match to d1osma_
        complexed with asz, c8e, d10, d12, hex, hp6, oct, oes, so4; mutant
      2. 3022196Domain d2xe5b_: 2xe5 B: [170055]
        automated match to d1osma_
        complexed with asz, c8e, d10, d12, hex, hp6, oct, oes, so4; mutant
      3. 3022197Domain d2xe5c_: 2xe5 C: [170056]
        automated match to d1osma_
        complexed with asz, c8e, d10, d12, hex, hp6, oct, oes, so4; mutant
      4. 3022198Domain d2xe5d_: 2xe5 D: [170057]
        automated match to d1osma_
        complexed with asz, c8e, d10, d12, hex, hp6, oct, oes, so4; mutant
      5. 3022199Domain d2xe5e_: 2xe5 E: [170058]
        automated match to d1osma_
        complexed with asz, c8e, d10, d12, hex, hp6, oct, oes, so4; mutant
      6. 3022200Domain d2xe5f_: 2xe5 F: [170059]
        automated match to d1osma_
        complexed with asz, c8e, d10, d12, hex, hp6, oct, oes, so4; mutant
    9. Domains for 7jz3:
      1. 3022209Domain d7jz3a_: 7jz3 A: [399131]
        automated match to d2j1na_
      2. 3022210Domain d7jz3b_: 7jz3 B: [399091]
        automated match to d2j1na_
      3. 3022211Domain d7jz3c_: 7jz3 C: [399122]
        automated match to d2j1na_
  5. 3022220Escherichia coli [TaxId:83333] [400939] (1 PDB entry)
  6. 3022224Klebsiella pneumoniae [TaxId:573] [340493] (6 PDB entries)
    1. Domains for 5nup:
      1. 3022241Domain d5nupa_: 5nup A: [340494]
        automated match to d1osma_
        complexed with c8e, lmt
      2. 3022242Domain d5nupb_: 5nup B: [340570]
        automated match to d1osma_
        complexed with c8e, lmt
      3. 3022243Domain d5nupc_: 5nup C: [340585]
        automated match to d1osma_
        complexed with c8e, lmt
    2. Domain for 5o77:
    3. Domains for 5o79:
      1. 3022226Domain d5o79a_: 5o79 A: [353826]
        automated match to d1osma_
        complexed with c8e, mg
      2. 3022227Domain d5o79b_: 5o79 B: [353726]
        automated match to d1osma_
        complexed with c8e, mg
      3. 3022228Domain d5o79c_: 5o79 C: [353720]
        automated match to d1osma_
        complexed with c8e, mg
    4. Domains for 6rck:
      1. 3022235Domain d6rcka1: 6rck A:1-346 [374061]
        Other proteins in same PDB: d6rcka2, d6rckb2, d6rckc2
        automated match to d1osma_
        complexed with c8e, lda, p6l
      2. 3022236Domain d6rckb1: 6rck B:1-346 [374043]
        Other proteins in same PDB: d6rcka2, d6rckb2, d6rckc2
        automated match to d1osma_
        complexed with c8e, lda, p6l
      3. 3022237Domain d6rckc1: 6rck C:1-346 [374023]
        Other proteins in same PDB: d6rcka2, d6rckb2, d6rckc2
        automated match to d1osma_
        complexed with c8e, lda, p6l
    5. Domains for 6rd3:
      1. 3022229Domain d6rd3a1: 6rd3 A:1-344 [374016]
        Other proteins in same PDB: d6rd3a2, d6rd3b2, d6rd3c2, d6rd3d2, d6rd3e2, d6rd3f2
        automated match to d1osma_
        complexed with c8e, mg
      2. 3022230Domain d6rd3b1: 6rd3 B:1-344 [374026]
        Other proteins in same PDB: d6rd3a2, d6rd3b2, d6rd3c2, d6rd3d2, d6rd3e2, d6rd3f2
        automated match to d1osma_
        complexed with c8e, mg
      3. 3022231Domain d6rd3c1: 6rd3 C:1-344 [374040]
        Other proteins in same PDB: d6rd3a2, d6rd3b2, d6rd3c2, d6rd3d2, d6rd3e2, d6rd3f2
        automated match to d1osma_
        complexed with c8e, mg
      4. 3022232Domain d6rd3d1: 6rd3 D:1-344 [374081]
        Other proteins in same PDB: d6rd3a2, d6rd3b2, d6rd3c2, d6rd3d2, d6rd3e2, d6rd3f2
        automated match to d1osma_
        complexed with c8e, mg
      5. 3022233Domain d6rd3e1: 6rd3 E:1-344 [374058]
        Other proteins in same PDB: d6rd3a2, d6rd3b2, d6rd3c2, d6rd3d2, d6rd3e2, d6rd3f2
        automated match to d1osma_
        complexed with c8e, mg
      6. 3022234Domain d6rd3f1: 6rd3 F:1-344 [374020]
        Other proteins in same PDB: d6rd3a2, d6rd3b2, d6rd3c2, d6rd3d2, d6rd3e2, d6rd3f2
        automated match to d1osma_
        complexed with c8e, mg
    6. Domains for 6v78:
      1. 3022238Domain d6v78a_: 6v78 A: [383228]
        automated match to d1osma_
      2. 3022239Domain d6v78b_: 6v78 B: [383257]
        automated match to d1osma_
      3. 3022240Domain d6v78c_: 6v78 C: [383230]
        automated match to d1osma_
  7. 3022244Salmonella enterica [TaxId:527001] [193694] (2 PDB entries)
    1. Domains for 3nsg:
      1. 3022245Domain d3nsga_: 3nsg A: [199972]
        automated match to d3nsgc_
        complexed with flc, gol, lda, so4, tam, tla
      2. 3022246Domain d3nsgb_: 3nsg B: [199973]
        automated match to d3nsgc_
        complexed with flc, gol, lda, so4, tam, tla
      3. 3022247Domain d3nsgc_: 3nsg C: [193695]
        automated match to d2zfga_
        complexed with flc, gol, lda, so4, tam, tla
    2. Domains for 4kr8:
      1. 3022248Domain d4kr8a_: 4kr8 A: [256893]
        automated match to d3nsga_
        complexed with dm1
      2. 3022249Domain d4kr8b_: 4kr8 B: [256892]
        automated match to d3nsga_
        complexed with dm1
      3. 3022250Domain d4kr8c_: 4kr8 C: [256894]
        automated match to d3nsga_
        complexed with dm1

More info for Protein automated matches from f.4.3.1: Porin

Timeline for Protein automated matches from f.4.3.1: Porin: