Lineage for Protein: automated matches

  1. Root: SCOPe 2.08
  2. Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
  3. Fold c.69: alpha/beta-Hydrolases [53473] (1 superfamily)
    core: 3 layers, a/b/a; mixed beta-sheet of 8 strands, order 12435678, strand 2 is antiparallel to the rest
  4. Superfamily c.69.1: alpha/beta-Hydrolases [53474] (43 families) (S)
    many members have left-handed crossover connection between strand 8 and additional strand 9
  5. Family c.69.1.18: Bacterial lipase [53570] (4 proteins)
    lack the first two strands of the common fold
  6. Protein automated matches [190277] (12 species)
    not a true protein

Species:

  1. Bacillus sp. [TaxId:294830] [197378] (1 PDB entry)
  2. Bacillus sp. [TaxId:307644] [197008] (1 PDB entry)
  3. Bacillus subtilis [TaxId:1423] [189733] (1 PDB entry)
  4. Bacillus subtilis [TaxId:224308] [196055] (1 PDB entry)
  5. Burkholderia cepacia [TaxId:292] [187270] (3 PDB entries)
    1. Domain for 1ys1:
    2. Domain for 1ys2:
    3. Domain for 2nw6:
  6. Burkholderia glumae [TaxId:337] [187070] (1 PDB entry)
  7. Burkholderia stabilis [TaxId:95485] [396908] (2 PDB entries)
    1. Domain for 7cof:
    2. Domains for 7cog:
      1. Domain d7coga_: 7cog A: [397008]
        automated match to d3lipa_
        complexed with ca
      2. Domain d7cogb_: 7cog B: [396965]
        automated match to d3lipa_
        complexed with ca
      3. Domain d7cogc_: 7cog C: [396960]
        automated match to d3lipa_
        complexed with ca
      4. Domain d7cogd_: 7cog D: [396909]
        automated match to d3lipa_
        complexed with ca
  8. Geobacillus stearothermophilus [TaxId:1422] [226739] (12 PDB entries)
    1. Domains for 4fmp:
      1. Domain d4fmpa_: 4fmp A: [221363]
        automated match to d2w22a_
        complexed with ca, zn
      2. Domain d4fmpb_: 4fmp B: [221364]
        automated match to d2w22a_
        complexed with ca, zn
    2. Domain for 4x6u:
    3. Domain for 6fz1:
    4. Domain for 6fz7:
    5. Domain for 6fz8:
    6. Domain for 6fz9:
    7. Domain for 6fza:
    8. Domain for 6fzc:
    9. Domain for 6fzd:
    10. Domain for 6s3g:
    11. Domain for 6s3j:
    12. Domain for 6s3v:
  9. Geobacillus stearothermophilus [TaxId:646309] [273786] (3 PDB entries)
    1. Domain for 4x71:
    2. Domain for 4x7b:
    3. Domain for 4x85:
  10. Geobacillus thermocatenulatus [TaxId:33938] [188721] (2 PDB entries)
    1. Domain for 2w22:
    2. Domain for 5ce5:
  11. Geobacillus zalihae [TaxId:213419] [187349] (4 PDB entries)
    1. Domains for 2dsn:
      1. Domain d2dsna_: 2dsn A: [163683]
        automated match to d1ji3a_
        complexed with ca, cl, na, zn
      2. Domain d2dsnb_: 2dsn B: [163684]
        automated match to d1ji3a_
        complexed with ca, cl, na, zn
    2. Domains for 2z5g:
      1. Domain d2z5ga_: 2z5g A: [171062]
        automated match to d1ji3a_
        complexed with ca, cl, zn; mutant
      2. Domain d2z5gb_: 2z5g B: [171063]
        automated match to d1ji3a_
        complexed with ca, cl, zn; mutant
    3. Domains for 3umj:
      1. Domain d3umja_: 3umj A: [201013]
        automated match to d3umjb_
        complexed with ca, cl, gol, na, zn
      2. Domain d3umjb_: 3umj B: [195990]
        automated match to d1ji3a_
        complexed with ca, cl, gol, na, zn
    4. Domains for 7buk:
      1. Domain d7buka_: 7buk A: [401790]
        automated match to d1ku0a_
        complexed with ca, zn; mutant
      2. Domain d7bukb_: 7buk B: [401855]
        automated match to d1ku0a_
        complexed with ca, zn; mutant
  12. Pseudomonas sp. [TaxId:1680634] [353774] (1 PDB entry)

More info for Protein automated matches from c.69.1.18: Bacterial lipase

Timeline for Protein automated matches from c.69.1.18: Bacterial lipase: