Lineage for Protein: automated matches

  1. Root: SCOPe 2.06
  2. 2089713Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
  3. 2137193Fold c.55: Ribonuclease H-like motif [53066] (7 superfamilies)
    3 layers: a/b/a; mixed beta-sheet of 5 strands, order 32145; strand 2 is antiparallel to the rest
  4. 2139124Superfamily c.55.3: Ribonuclease H-like [53098] (15 families) (S)
    consists of one domain of this fold
  5. 2139125Family c.55.3.1: Ribonuclease H [53099] (5 proteins)
  6. 2139371Protein automated matches [190266] (7 species)
    not a true protein

Species:

  1. 2139372Bacillus halodurans [TaxId:272558] [188179] (2 PDB entries)
    1. Domains for 1zbi:
      1. 2139373Domain d1zbia_: 1zbi A: [124853]
        automated match to d1zbfa1
        protein/DNA complex; protein/RNA complex; complexed with mg; mutant
      2. 2139374Domain d1zbib_: 1zbi B: [124854]
        automated match to d1zbfa1
        protein/DNA complex; protein/RNA complex; complexed with mg; mutant
    2. Domain for 1zbl:
      • 2139375Domain d1zblb_: 1zbl B: [124857]
        Other proteins in same PDB: d1zbla1
        automated match to d1zbla1
        protein/DNA complex; protein/RNA complex; complexed with mg; mutant
  2. 2139376Escherichia coli K-12 [TaxId:83333] [189502] (1 PDB entry)
  3. 2139378Escherichia coli [TaxId:562] [188270] (4 PDB entries)
    1. Domain for 2z1g:
    2. Domain for 2z1h:
    3. Domains for 2z1i:
      1. 2139379Domain d2z1ia_: 2z1i A: [170972]
        automated match to d1rbva_
        mutant
      2. 2139380Domain d2z1ib_: 2z1i B: [170973]
        automated match to d1rbva_
        mutant
    4. Domain for 2z1j:
  4. 2139384Human immunodeficiency virus 1, escherichia coli [TaxId:11676] [189090] (2 PDB entries)
    1. Domain for 3hyf:
    2. Domains for 5dzm:
      1. 2139386Domain d5dzma_: 5dzm A: [317201]
        automated match to d3k2pa_
      2. 2139387Domain d5dzmb_: 5dzm B: [317200]
        automated match to d3k2pa_
      3. 2139388Domain d5dzmc_: 5dzm C: [317220]
        automated match to d3k2pa_
      4. 2139389Domain d5dzmd_: 5dzm D: [317202]
        automated match to d3k2pa_
  5. 2139390Shewanella oneidensis [TaxId:70863] [188955] (1 PDB entry)
  6. 2139395Thermococcus kodakarensis [TaxId:69014] [187055] (3 PDB entries)
    1. Domain for 2dfe:
    2. Domain for 2dff:
    3. Domain for 2dfh:
  7. 2139399Thermotoga maritima [TaxId:2336] [189559] (4 PDB entries)
    1. Domain for 3o3f:
      • 2139400Domain d3o3fa_: 3o3f A: [182775]
        automated match to d2etja1
        protein/DNA complex; protein/RNA complex; complexed with mg
    2. Domain for 3o3g:
      • 2139401Domain d3o3ga_: 3o3g A: [182776]
        automated match to d2etja1
        protein/DNA complex; protein/RNA complex; complexed with ca
    3. Domain for 3o3h:
      • 2139402Domain d3o3ha_: 3o3h A: [182777]
        automated match to d2etja1
        protein/DNA complex; protein/RNA complex; complexed with mn
    4. Domain for 4hht:

More info for Protein automated matches from c.55.3.1: Ribonuclease H

Timeline for Protein automated matches from c.55.3.1: Ribonuclease H: