SCOPe 2.07: Protein: automated matches

Lineage for Protein: automated matches

Root: SCOPe 2.07
Class d: Alpha and beta proteins (a+b) [53931] (388 folds)
Fold d.3: Cysteine proteinases [54000] (1 superfamily)
consists of one alpha-helix and 4 strands of antiparallel beta-sheet and contains the catalytic triad Cys-His-Asn

Superfamily d.3.1: Cysteine proteinases [54001] (24 families)

the constitute families differ by insertion into and circular permutation of the common catalytic core made of one alpha-helix and 3-strands of beta-sheet

Family d.3.1.1: Papain-like [54002] (26 proteins)
Protein automated matches [190264] (12 species)
not a true protein

Species:

Actinidia arguta [TaxId:64478] [189532] (4 PDB entries)
1. Domain for 3p5u:
  - Domain d3p5ua_: 3p5u A: [183542]
    automated match to d1aeca_
    complexed with cd
2. Domain for 3p5v:
  - Domain d3p5va_: 3p5v A: [183543]
    automated match to d1aeca_
    complexed with cd
3. Domain for 3p5w:
  - Domain d3p5wa_: 3p5w A: [183544]
    automated match to d1aeca_
    complexed with cd
4. Domain for 3p5x:
  - Domain d3p5xa_: 3p5x A: [183545]
    automated match to d1aeca_
    complexed with cd
Carica candamarcensis [TaxId:35926] [189214] (1 PDB entry)
- Domain for 3ioq:
  - Domain d3ioqa_: 3ioq A: [178493]
    automated match to d1khpa_
    complexed with e64, edo, so4
Cow (Bos taurus) [TaxId:9913] [187053] (8 PDB entries)
1. Domain for 2dc6:
  - Domain d2dc6a_: 2dc6 A: [131365]
    automated match to d1itoa_
    complexed with 73v, gol, po4
2. Domain for 2dc7:
  - Domain d2dc7a_: 2dc7 A: [131366]
    automated match to d1itoa_
    complexed with 042, gol, po4
3. Domain for 2dc8:
  - Domain d2dc8a_: 2dc8 A: [131367]
    automated match to d1itoa_
    complexed with 59a, gol, po4
4. Domain for 2dc9:
  - Domain d2dc9a_: 2dc9 A: [131368]
    automated match to d1itoa_
    complexed with 74m, gol, po4
5. Domain for 2dca:
  - Domain d2dcaa_: 2dca A: [131369]
    automated match to d1itoa_
    complexed with 75v, gol, po4
6. Domain for 2dcb:
  - Domain d2dcba_: 2dcb A: [131370]
    automated match to d1itoa_
    complexed with 76v, gol, po4
7. Domain for 2dcc:
  - Domain d2dcca_: 2dcc A: [131371]
    automated match to d1itoa_
    complexed with 77b, gol, po4
8. Domain for 2dcd:
  - Domain d2dcda_: 2dcd A: [131372]
    automated match to d1itoa_
    complexed with 78a, gol, po4
Ervatamia coronaria [311236] (1 PDB entry)
- Domain for 2psc:
  - Domain d2psca_: 2psc A: [304373]
    automated match to d3bcna_
    complexed with bme, e64
Ficus carica [TaxId:3494] [315519] (1 PDB entry)
- Domains for 4yys:
  1. Domain d4yysa_: 4yys A: [315520]
    automated match to d1cqda_
    complexed with po4
  2. Domain d4yysb_: 4yys B: [315545]
    automated match to d1cqda_
    complexed with po4
Human (Homo sapiens) [TaxId:9606] [187102] (9 PDB entries)
1. Domain for 2c0y:
  - Domain d2c0ya_: 2c0y A: [203682]
    automated match to d1by8a_
    mutant
2. Domains for 2fq9:
  1. Domain d2fq9a_: 2fq9 A: [133941]
    automated match to d1ms6a_
    complexed with crj
  2. Domain d2fq9b_: 2fq9 B: [133942]
    automated match to d1ms6a_
    complexed with crj
3. Domains for 2fra:
  1. Domain d2fraa_: 2fra A: [133978]
    automated match to d1ms6a_
    complexed with crv
  2. Domain d2frab_: 2fra B: [133979]
    automated match to d1ms6a_
    complexed with crv
4. Domains for 2frq:
  1. Domain d2frqa_: 2frq A: [133999]
    automated match to d1ms6a_
    complexed with c71
  2. Domain d2frqb_: 2frq B: [134000]
    automated match to d1ms6a_
    complexed with c71
5. Domains for 2ft2:
  1. Domain d2ft2a_: 2ft2 A: [134054]
    automated match to d1ms6a_
    complexed with c28
  2. Domain d2ft2b_: 2ft2 B: [134055]
    automated match to d1ms6a_
    complexed with c28
6. Domains for 2fud:
  1. Domain d2fuda_: 2fud A: [134117]
    automated match to d1ms6a_
    complexed with crl
  2. Domain d2fudb_: 2fud B: [134118]
    automated match to d1ms6a_
    complexed with crl
7. Domain for 3pdf:
  - Domain d3pdfa2: 3pdf A:206-439 [233217]
    Other proteins in same PDB: d3pdfa1, d3pdfa3
    automated match to d1jqpa2
    complexed with cl, lxv, nag
8. Domain for 6jd0:
  - Domain d6jd0a_: 6jd0 A: [379776]
    automated match to d1cs8a_
    complexed with cl, edo, eoh, gol, na, pge, po4, pol; mutant
9. Domain for 6jd8:
  - Domain d6jd8a1: 6jd8 A:1-316 [379750]
    Other proteins in same PDB: d6jd8a2
    automated match to d1cs8a_
    complexed with edo, eoh, gol, peg, pge; mutant
Jacaratia mexicana [TaxId:309130] [187452] (1 PDB entry)
- Domains for 2bdz:
  1. Domain d2bdza_: 2bdz A: [163048]
    automated match to d1yala_
    complexed with e64
  2. Domain d2bdzb_: 2bdz B: [163049]
    automated match to d1yala_
    complexed with e64
  3. Domain d2bdzc_: 2bdz C: [163050]
    automated match to d1yala_
    complexed with e64
  4. Domain d2bdzd_: 2bdz D: [163051]
    automated match to d1yala_
    complexed with e64
Leishmania mexicana [TaxId:5665] [386469] (1 PDB entry)
- Domains for 6p4e:
  1. Domain d6p4ea_: 6p4e A: [386470]
    automated match to d3i06a_
    complexed with act, ges, mpd, na, trs
  2. Domain d6p4eb_: 6p4e B: [386471]
    automated match to d3i06a_
    complexed with act, ges, mpd, na, trs
Malaria parasite (Plasmodium falciparum) [TaxId:5833] [188686] (2 PDB entries)
1. Domains for 3bpm:
  1. Domain d3bpma_: 3bpm A: [172773]
    automated match to d1yvba1
    complexed with so4
  2. Domain d3bpmb_: 3bpm B: [172774]
    automated match to d1yvba1
    complexed with so4
2. Domains for 3bwk:
  1. Domain d3bwka_: 3bwk A: [172884]
    automated match to d1yvba1
    complexed with c1p, so4
  2. Domain d3bwkb_: 3bwk B: [172885]
    automated match to d1yvba1
    complexed with c1p, so4
  3. Domain d3bwkc_: 3bwk C: [172886]
    automated match to d1yvba1
    complexed with c1p, so4
  4. Domain d3bwkd_: 3bwk D: [172887]
    automated match to d1yvba1
    complexed with c1p, so4
Mouse (Mus musculus) [TaxId:10090] [229208] (7 PDB entries)
1. Domains for 4bpv:
  1. Domain d4bpva_: 4bpv A: [262533]
    automated match to d4bs5a_
    complexed with ofh
  2. Domain d4bpvb_: 4bpv B: [256572]
    automated match to d4bs5a_
    complexed with ofh
  3. Domain d4bpvc_: 4bpv C: [262534]
    automated match to d4bs5a_
    complexed with ofh
  4. Domain d4bpvd_: 4bpv D: [262535]
    automated match to d4bs5a_
    complexed with ofh
  5. Domain d4bpve_: 4bpv E: [262536]
    automated match to d4bs5a_
    complexed with ofh
  6. Domain d4bpvk_: 4bpv K: [262537]
    automated match to d4bs5a_
    complexed with ofh
2. Domains for 4bqv:
  1. Domain d4bqva_: 4bqv A: [265947]
    automated match to d4bs5a_
    complexed with 8pw
  2. Domain d4bqvb_: 4bqv B: [265948]
    automated match to d4bs5a_
    complexed with 8pw
  3. Domain d4bqvc_: 4bqv C: [265949]
    automated match to d4bs5a_
    complexed with 8pw
  4. Domain d4bqvd_: 4bqv D: [265950]
    automated match to d4bs5a_
    complexed with 8pw
  5. Domain d4bqve_: 4bqv E: [265951]
    automated match to d4bs5a_
    complexed with 8pw
  6. Domain d4bqvf_: 4bqv F: [265952]
    automated match to d4bs5a_
    complexed with 8pw
  7. Domain d4bqvg_: 4bqv G: [265953]
    automated match to d4bs5a_
    complexed with 8pw
  8. Domain d4bqvh_: 4bqv H: [265954]
    automated match to d4bs5a_
    complexed with 8pw
3. Domain for 4bs5:
  - Domain d4bs5a_: 4bs5 A: [229209]
    automated match to d2hhna_
    complexed with mg2
4. Domains for 4bs6:
  1. Domain d4bs6a_: 4bs6 A: [265955]
    automated match to d4bs5a_
    complexed with gol, jg7
  2. Domain d4bs6b_: 4bs6 B: [265956]
    automated match to d4bs5a_
    complexed with gol, jg7
5. Domain for 4bsq:
  - Domain d4bsqa_: 4bsq A: [234279]
    automated match to d4bs5a_
    complexed with qqv, so4
6. Domains for 4mzo:
  1. Domain d4mzoa_: 4mzo A: [259385]
    automated match to d4bs5a_
    complexed with 2ew
  2. Domain d4mzob_: 4mzo B: [259384]
    automated match to d4bs5a_
    complexed with 2ew
  3. Domain d4mzoc_: 4mzo C: [263081]
    automated match to d4bs5a_
    complexed with 2ew
  4. Domain d4mzod_: 4mzo D: [263082]
    automated match to d4bs5a_
    complexed with 2ew
  5. Domain d4mzoe_: 4mzo E: [263083]
    automated match to d4bs5a_
    complexed with 2ew
  6. Domain d4mzof_: 4mzo F: [263084]
    automated match to d4bs5a_
    complexed with 2ew
  7. Domain d4mzog_: 4mzo G: [263085]
    automated match to d4bs5a_
    complexed with 2ew
  8. Domain d4mzoh_: 4mzo H: [263086]
    automated match to d4bs5a_
    complexed with 2ew
7. Domains for 4mzs:
  1. Domain d4mzsa_: 4mzs A: [259077]
    automated match to d4bs5a_
    complexed with 2ev
  2. Domain d4mzsb_: 4mzs B: [263087]
    automated match to d4bs5a_
    complexed with 2ev
Tabernaemontana divaricata [TaxId:52861] [187993] (3 PDB entries)
1. Domains for 2pns:
  1. Domain d2pnsa_: 2pns A: [167226]
    automated match to d1o0ea_
    complexed with po4, thj
  2. Domain d2pnsb_: 2pns B: [167227]
    automated match to d1o0ea_
    complexed with po4, thj
2. Domains for 2pre:
  1. Domain d2prea_: 2pre A: [167250]
    automated match to d1o0ea_
    complexed with e64, so4
  2. Domain d2preb_: 2pre B: [167251]
    automated match to d1o0ea_
    complexed with e64, so4
3. Domains for 3bcn:
  1. Domain d3bcna_: 3bcn A: [172538]
    automated match to d1o0ea_
    complexed with bme, e64
  2. Domain d3bcnb_: 3bcn B: [172539]
    automated match to d1o0ea_
    complexed with bme, e64
Trypanosoma brucei [TaxId:31286] [188393] (5 PDB entries)
1. Domain for 2p7u:
  - Domain d2p7ua_: 2p7u A: [167079]
    automated match to d1ewla_
    complexed with d1r
2. Domain for 2p86:
  - Domain d2p86a_: 2p86 A: [167080]
    automated match to d1ewla_
    complexed with edo, vs1
3. Domains for 6ex8:
  1. Domain d6ex8a_: 6ex8 A: [350868]
    automated match to d2p86a_
    complexed with c2k, edo
  2. Domain d6ex8b_: 6ex8 B: [350938]
    automated match to d2p86a_
    complexed with c2k, edo
4. Domains for 6exo:
  1. Domain d6exoa_: 6exo A: [350873]
    automated match to d2p86a_
    complexed with c3e, edo
  2. Domain d6exob_: 6exo B: [351009]
    automated match to d2p86a_
    complexed with c3e, edo
5. Domains for 6exq:
  1. Domain d6exqa_: 6exq A: [350875]
    automated match to d2p86a_
    complexed with c2w, edo
  2. Domain d6exqb_: 6exq B: [350859]
    automated match to d2p86a_
    complexed with c2w, edo

More info for Protein automated matches from d.3.1.1: Papain-like

Timeline for Protein automated matches from d.3.1.1: Papain-like:

Protein automated matches from d.3.1.1: Papain-like first appeared in SCOPe 2.01
Protein automated matches from d.3.1.1: Papain-like appears in SCOPe 2.06
Protein automated matches from d.3.1.1: Papain-like appears in the current release, SCOPe 2.08