Species:

1. Actinidia arguta [TaxId:64478] [189532] (4 PDB entries)

   1. Domain for 3p5u:

      • Domain d3p5ua_: 3p5u A: [183542] automated match to d1aeca_ complexed with cd

   2. Domain for 3p5v:

      • Domain d3p5va_: 3p5v A: [183543] automated match to d1aeca_ complexed with cd

   3. Domain for 3p5w:

      • Domain d3p5wa_: 3p5w A: [183544] automated match to d1aeca_ complexed with cd

   4. Domain for 3p5x:

      • Domain d3p5xa_: 3p5x A: [183545] automated match to d1aeca_ complexed with cd

2. Carica candamarcensis [TaxId:35926] [189214] (1 PDB entry)

   • Domain for 3ioq:

     • Domain d3ioqa_: 3ioq A: [178493] automated match to d1khpa_ complexed with e64, edo, so4

3. Cow (Bos taurus) [TaxId:9913] [187053] (8 PDB entries)

   1. Domain for 2dc6:

      • Domain d2dc6a_: 2dc6 A: [131365] automated match to d1itoa_ complexed with 73v, gol, po4

   2. Domain for 2dc7:

      • Domain d2dc7a_: 2dc7 A: [131366] automated match to d1itoa_ complexed with 042, gol, po4

   3. Domain for 2dc8:

      • Domain d2dc8a_: 2dc8 A: [131367] automated match to d1itoa_ complexed with 59a, gol, po4

   4. Domain for 2dc9:

      • Domain d2dc9a_: 2dc9 A: [131368] automated match to d1itoa_ complexed with 74m, gol, po4

   5. Domain for 2dca:

      • Domain d2dcaa_: 2dca A: [131369] automated match to d1itoa_ complexed with 75v, gol, po4

   6. Domain for 2dcb:

      • Domain d2dcba_: 2dcb A: [131370] automated match to d1itoa_ complexed with 76v, gol, po4

   7. Domain for 2dcc:

      • Domain d2dcca_: 2dcc A: [131371] automated match to d1itoa_ complexed with 77b, gol, po4

   8. Domain for 2dcd:

      • Domain d2dcda_: 2dcd A: [131372] automated match to d1itoa_ complexed with 78a, gol, po4

4. Human (Homo sapiens) [TaxId:9606] [187102] (7 PDB entries)

   1. Domain for 2c0y:

      • Domain d2c0ya_: 2c0y A: [203682] automated match to d1by8a_ mutant

   2. Domains for 2fq9:

      1. Domain d2fq9a_: 2fq9 A: [133941] automated match to d1ms6a_ complexed with crj

      2. Domain d2fq9b_: 2fq9 B: [133942] automated match to d1ms6a_ complexed with crj

   3. Domains for 2fra:

      1. Domain d2fraa_: 2fra A: [133978] automated match to d1ms6a_ complexed with crv

      2. Domain d2frab_: 2fra B: [133979] automated match to d1ms6a_ complexed with crv

   4. Domains for 2frq:

      1. Domain d2frqa_: 2frq A: [133999] automated match to d1ms6a_ complexed with c71

      2. Domain d2frqb_: 2frq B: [134000] automated match to d1ms6a_ complexed with c71

   5. Domains for 2ft2:

      1. Domain d2ft2a_: 2ft2 A: [134054] automated match to d1ms6a_ complexed with c28

      2. Domain d2ft2b_: 2ft2 B: [134055] automated match to d1ms6a_ complexed with c28

   6. Domains for 2fud:

      1. Domain d2fuda_: 2fud A: [134117] automated match to d1ms6a_ complexed with crl

      2. Domain d2fudb_: 2fud B: [134118] automated match to d1ms6a_ complexed with crl

   7. Domain for 3pdf:

      • Domain d3pdfa2: 3pdf A:206-441 [233217] Other proteins in same PDB: d3pdfa1 automated match to d1jqpa2 complexed with cl, lxv, nag

5. Jacaratia mexicana [TaxId:309130] [187452] (1 PDB entry)

   • Domains for 2bdz:

     1. Domain d2bdza_: 2bdz A: [163048] automated match to d1yala_ complexed with e64

     2. Domain d2bdzb_: 2bdz B: [163049] automated match to d1yala_ complexed with e64

     3. Domain d2bdzc_: 2bdz C: [163050] automated match to d1yala_ complexed with e64

     4. Domain d2bdzd_: 2bdz D: [163051] automated match to d1yala_ complexed with e64

6. Malaria parasite (Plasmodium falciparum) [TaxId:5833] [188686] (2 PDB entries)

   1. Domains for 3bpm:

      1. Domain d3bpma_: 3bpm A: [172773] automated match to d1yvba1 complexed with so4

      2. Domain d3bpmb_: 3bpm B: [172774] automated match to d1yvba1 complexed with so4

   2. Domains for 3bwk:

      1. Domain d3bwka_: 3bwk A: [172884] automated match to d1yvba1 complexed with c1p, so4

      2. Domain d3bwkb_: 3bwk B: [172885] automated match to d1yvba1 complexed with c1p, so4

      3. Domain d3bwkc_: 3bwk C: [172886] automated match to d1yvba1 complexed with c1p, so4

      4. Domain d3bwkd_: 3bwk D: [172887] automated match to d1yvba1 complexed with c1p, so4

7. Mouse (Mus musculus) [TaxId:10090] [229208] (7 PDB entries)

   1. Domains for 4bpv:

      1. Domain d4bpva_: 4bpv A: [262533] automated match to d4bs5a_ complexed with ofh

      2. Domain d4bpvb_: 4bpv B: [256572] automated match to d4bs5a_ complexed with ofh

      3. Domain d4bpvc_: 4bpv C: [262534] automated match to d4bs5a_ complexed with ofh

      4. Domain d4bpvd_: 4bpv D: [262535] automated match to d4bs5a_ complexed with ofh

      5. Domain d4bpve_: 4bpv E: [262536] automated match to d4bs5a_ complexed with ofh

      6. Domain d4bpvk_: 4bpv K: [262537] automated match to d4bs5a_ complexed with ofh

   2. Domains for 4bqv:

      1. Domain d4bqva_: 4bqv A: [265947] automated match to d4bs5a_ complexed with 8pw

      2. Domain d4bqvb_: 4bqv B: [265948] automated match to d4bs5a_ complexed with 8pw

      3. Domain d4bqvc_: 4bqv C: [265949] automated match to d4bs5a_ complexed with 8pw

      4. Domain d4bqvd_: 4bqv D: [265950] automated match to d4bs5a_ complexed with 8pw

      5. Domain d4bqve_: 4bqv E: [265951] automated match to d4bs5a_ complexed with 8pw

      6. Domain d4bqvf_: 4bqv F: [265952] automated match to d4bs5a_ complexed with 8pw

      7. Domain d4bqvg_: 4bqv G: [265953] automated match to d4bs5a_ complexed with 8pw

      8. Domain d4bqvh_: 4bqv H: [265954] automated match to d4bs5a_ complexed with 8pw

   3. Domain for 4bs5:

      • Domain d4bs5a_: 4bs5 A: [229209] automated match to d2hhna_ complexed with mg2

   4. Domains for 4bs6:

      1. Domain d4bs6a_: 4bs6 A: [265955] automated match to d4bs5a_ complexed with gol, jg7

      2. Domain d4bs6b_: 4bs6 B: [265956] automated match to d4bs5a_ complexed with gol, jg7

   5. Domain for 4bsq:

      • Domain d4bsqa_: 4bsq A: [234279] automated match to d4bs5a_ complexed with qqv, so4

   6. Domains for 4mzo:

      1. Domain d4mzoa_: 4mzo A: [259385] automated match to d4bs5a_ complexed with 2ew

      2. Domain d4mzob_: 4mzo B: [259384] automated match to d4bs5a_ complexed with 2ew

      3. Domain d4mzoc_: 4mzo C: [263081] automated match to d4bs5a_ complexed with 2ew

      4. Domain d4mzod_: 4mzo D: [263082] automated match to d4bs5a_ complexed with 2ew

      5. Domain d4mzoe_: 4mzo E: [263083] automated match to d4bs5a_ complexed with 2ew

      6. Domain d4mzof_: 4mzo F: [263084] automated match to d4bs5a_ complexed with 2ew

      7. Domain d4mzog_: 4mzo G: [263085] automated match to d4bs5a_ complexed with 2ew

      8. Domain d4mzoh_: 4mzo H: [263086] automated match to d4bs5a_ complexed with 2ew

   7. Domains for 4mzs:

      1. Domain d4mzsa_: 4mzs A: [259077] automated match to d4bs5a_ complexed with 2ev

      2. Domain d4mzsb_: 4mzs B: [263087] automated match to d4bs5a_ complexed with 2ev

8. Tabernaemontana divaricata [TaxId:52861] [187993] (3 PDB entries)

   1. Domains for 2pns:

      1. Domain d2pnsa_: 2pns A: [167226] automated match to d1o0ea_ complexed with po4, thj

      2. Domain d2pnsb_: 2pns B: [167227] automated match to d1o0ea_ complexed with po4, thj

   2. Domains for 2pre:

      1. Domain d2prea_: 2pre A: [167250] automated match to d1o0ea_ complexed with e64, so4

      2. Domain d2preb_: 2pre B: [167251] automated match to d1o0ea_ complexed with e64, so4

   3. Domains for 3bcn:

      1. Domain d3bcna_: 3bcn A: [172538] automated match to d1o0ea_ complexed with bme, e64

      2. Domain d3bcnb_: 3bcn B: [172539] automated match to d1o0ea_ complexed with bme, e64

9. Trypanosoma brucei [TaxId:31286] [188393] (2 PDB entries)

   1. Domain for 2p7u:

      • Domain d2p7ua_: 2p7u A: [167079] automated match to d1ewla_ complexed with d1r

   2. Domain for 2p86:

      • Domain d2p86a_: 2p86 A: [167080] automated match to d1ewla_ complexed with edo, vs1

More info for Protein automated matches from d.3.1.1: Papain-like

Timeline for Protein automated matches from d.3.1.1: Papain-like:

• Protein automated matches from d.3.1.1: Papain-like first appeared in SCOPe 2.01
  
• Protein automated matches from d.3.1.1: Papain-like appears in SCOPe 2.04
  
• Protein automated matches from d.3.1.1: Papain-like appears in SCOPe 2.06
  
• Protein automated matches from d.3.1.1: Papain-like appears in the current release, SCOPe 2.08