Lineage for Protein: automated matches

  1. Root: SCOPe 2.07
  2. 2494617Class d: Alpha and beta proteins (a+b) [53931] (388 folds)
  3. 2497139Fold d.3: Cysteine proteinases [54000] (1 superfamily)
    consists of one alpha-helix and 4 strands of antiparallel beta-sheet and contains the catalytic triad Cys-His-Asn
  4. 2497140Superfamily d.3.1: Cysteine proteinases [54001] (24 families) (S)
    the constitute families differ by insertion into and circular permutation of the common catalytic core made of one alpha-helix and 3-strands of beta-sheet
  5. 2497141Family d.3.1.1: Papain-like [54002] (26 protein domains)
  6. 2497494Protein automated matches [190264] (11 species)
    not a true protein

Species:

  1. 2497495Actinidia arguta [TaxId:64478] [189532] (4 PDB entries)
    1. Domain for 3p5u:
    2. Domain for 3p5v:
    3. Domain for 3p5w:
    4. Domain for 3p5x:
  2. 2497500Carica candamarcensis [TaxId:35926] [189214] (1 PDB entry)
  3. 2497502Cow (Bos taurus) [TaxId:9913] [187053] (8 PDB entries)
    1. Domain for 2dc6:
    2. Domain for 2dc7:
    3. Domain for 2dc8:
    4. Domain for 2dc9:
    5. Domain for 2dca:
    6. Domain for 2dcb:
    7. Domain for 2dcc:
    8. Domain for 2dcd:
  4. 2497511Ervatamia coronaria [311236] (1 PDB entry)
  5. 2497513Ficus carica [TaxId:3494] [315519] (1 PDB entry)
  6. 2497516Human (Homo sapiens) [TaxId:9606] [187102] (7 PDB entries)
    1. Domain for 2c0y:
    2. Domains for 2fq9:
      1. 2497517Domain d2fq9a_: 2fq9 A: [133941]
        automated match to d1ms6a_
        complexed with crj
      2. 2497518Domain d2fq9b_: 2fq9 B: [133942]
        automated match to d1ms6a_
        complexed with crj
    3. Domains for 2fra:
      1. 2497527Domain d2fraa_: 2fra A: [133978]
        automated match to d1ms6a_
        complexed with crv
      2. 2497528Domain d2frab_: 2fra B: [133979]
        automated match to d1ms6a_
        complexed with crv
    4. Domains for 2frq:
      1. 2497522Domain d2frqa_: 2frq A: [133999]
        automated match to d1ms6a_
        complexed with c71
      2. 2497523Domain d2frqb_: 2frq B: [134000]
        automated match to d1ms6a_
        complexed with c71
    5. Domains for 2ft2:
      1. 2497525Domain d2ft2a_: 2ft2 A: [134054]
        automated match to d1ms6a_
        complexed with c28
      2. 2497526Domain d2ft2b_: 2ft2 B: [134055]
        automated match to d1ms6a_
        complexed with c28
    6. Domains for 2fud:
      1. 2497520Domain d2fuda_: 2fud A: [134117]
        automated match to d1ms6a_
        complexed with crl
      2. 2497521Domain d2fudb_: 2fud B: [134118]
        automated match to d1ms6a_
        complexed with crl
    7. Domain for 3pdf:
  7. 2497529Jacaratia mexicana [TaxId:309130] [187452] (1 PDB entry)
  8. 2497534Malaria parasite (Plasmodium falciparum) [TaxId:5833] [188686] (2 PDB entries)
    1. Domains for 3bpm:
      1. 2497539Domain d3bpma_: 3bpm A: [172773]
        automated match to d1yvba1
        complexed with so4
      2. 2497540Domain d3bpmb_: 3bpm B: [172774]
        automated match to d1yvba1
        complexed with so4
    2. Domains for 3bwk:
      1. 2497535Domain d3bwka_: 3bwk A: [172884]
        automated match to d1yvba1
        complexed with c1p, so4
      2. 2497536Domain d3bwkb_: 3bwk B: [172885]
        automated match to d1yvba1
        complexed with c1p, so4
      3. 2497537Domain d3bwkc_: 3bwk C: [172886]
        automated match to d1yvba1
        complexed with c1p, so4
      4. 2497538Domain d3bwkd_: 3bwk D: [172887]
        automated match to d1yvba1
        complexed with c1p, so4
  9. 2497541Mouse (Mus musculus) [TaxId:10090] [229208] (7 PDB entries)
    1. Domains for 4bpv:
      1. 2497564Domain d4bpva_: 4bpv A: [262533]
        automated match to d4bs5a_
        complexed with ofh
      2. 2497565Domain d4bpvb_: 4bpv B: [256572]
        automated match to d4bs5a_
        complexed with ofh
      3. 2497566Domain d4bpvc_: 4bpv C: [262534]
        automated match to d4bs5a_
        complexed with ofh
      4. 2497567Domain d4bpvd_: 4bpv D: [262535]
        automated match to d4bs5a_
        complexed with ofh
      5. 2497568Domain d4bpve_: 4bpv E: [262536]
        automated match to d4bs5a_
        complexed with ofh
      6. 2497569Domain d4bpvk_: 4bpv K: [262537]
        automated match to d4bs5a_
        complexed with ofh
    2. Domains for 4bqv:
      1. 2497553Domain d4bqva_: 4bqv A: [265947]
        automated match to d4bs5a_
        complexed with 8pw
      2. 2497554Domain d4bqvb_: 4bqv B: [265948]
        automated match to d4bs5a_
        complexed with 8pw
      3. 2497555Domain d4bqvc_: 4bqv C: [265949]
        automated match to d4bs5a_
        complexed with 8pw
      4. 2497556Domain d4bqvd_: 4bqv D: [265950]
        automated match to d4bs5a_
        complexed with 8pw
      5. 2497557Domain d4bqve_: 4bqv E: [265951]
        automated match to d4bs5a_
        complexed with 8pw
      6. 2497558Domain d4bqvf_: 4bqv F: [265952]
        automated match to d4bs5a_
        complexed with 8pw
      7. 2497559Domain d4bqvg_: 4bqv G: [265953]
        automated match to d4bs5a_
        complexed with 8pw
      8. 2497560Domain d4bqvh_: 4bqv H: [265954]
        automated match to d4bs5a_
        complexed with 8pw
    3. Domain for 4bs5:
    4. Domains for 4bs6:
      1. 2497542Domain d4bs6a_: 4bs6 A: [265955]
        automated match to d4bs5a_
        complexed with gol, jg7
      2. 2497543Domain d4bs6b_: 4bs6 B: [265956]
        automated match to d4bs5a_
        complexed with gol, jg7
    5. Domain for 4bsq:
    6. Domains for 4mzo:
      1. 2497545Domain d4mzoa_: 4mzo A: [259385]
        automated match to d4bs5a_
        complexed with 2ew
      2. 2497546Domain d4mzob_: 4mzo B: [259384]
        automated match to d4bs5a_
        complexed with 2ew
      3. 2497547Domain d4mzoc_: 4mzo C: [263081]
        automated match to d4bs5a_
        complexed with 2ew
      4. 2497548Domain d4mzod_: 4mzo D: [263082]
        automated match to d4bs5a_
        complexed with 2ew
      5. 2497549Domain d4mzoe_: 4mzo E: [263083]
        automated match to d4bs5a_
        complexed with 2ew
      6. 2497550Domain d4mzof_: 4mzo F: [263084]
        automated match to d4bs5a_
        complexed with 2ew
      7. 2497551Domain d4mzog_: 4mzo G: [263085]
        automated match to d4bs5a_
        complexed with 2ew
      8. 2497552Domain d4mzoh_: 4mzo H: [263086]
        automated match to d4bs5a_
        complexed with 2ew
    7. Domains for 4mzs:
      1. 2497562Domain d4mzsa_: 4mzs A: [259077]
        automated match to d4bs5a_
        complexed with 2ev
      2. 2497563Domain d4mzsb_: 4mzs B: [263087]
        automated match to d4bs5a_
        complexed with 2ev
  10. 2497570Tabernaemontana divaricata [TaxId:52861] [187993] (3 PDB entries)
    1. Domains for 2pns:
      1. 2497571Domain d2pnsa_: 2pns A: [167226]
        automated match to d1o0ea_
        complexed with po4, thj
      2. 2497572Domain d2pnsb_: 2pns B: [167227]
        automated match to d1o0ea_
        complexed with po4, thj
    2. Domains for 2pre:
      1. 2497573Domain d2prea_: 2pre A: [167250]
        automated match to d1o0ea_
        complexed with e64, so4
      2. 2497574Domain d2preb_: 2pre B: [167251]
        automated match to d1o0ea_
        complexed with e64, so4
    3. Domains for 3bcn:
      1. 2497575Domain d3bcna_: 3bcn A: [172538]
        automated match to d1o0ea_
        complexed with bme, e64
      2. 2497576Domain d3bcnb_: 3bcn B: [172539]
        automated match to d1o0ea_
        complexed with bme, e64
  11. 2497577Trypanosoma brucei [TaxId:31286] [188393] (5 PDB entries)
    1. Domain for 2p7u:
    2. Domain for 2p86:
    3. Domains for 6ex8:
      1. 3050806Domain d6ex8a_: 6ex8 A: [350868]
        automated match to d2p86a_
        complexed with c2k, edo
      2. 3050876Domain d6ex8b_: 6ex8 B: [350938]
        automated match to d2p86a_
        complexed with c2k, edo
    4. Domains for 6exo:
      1. 3050811Domain d6exoa_: 6exo A: [350873]
        automated match to d2p86a_
        complexed with c3e, edo
      2. 3050947Domain d6exob_: 6exo B: [351009]
        automated match to d2p86a_
        complexed with c3e, edo
    5. Domains for 6exq:
      1. 3050797Domain d6exqb_: 6exq B: [350859]
        automated match to d2p86a_
        complexed with c2w, edo
      2. 3050813Domain d6exqa_: 6exq A: [350875]
        automated match to d2p86a_
        complexed with c2w, edo

More info for Protein automated matches from d.3.1.1: Papain-like

Timeline for Protein automated matches from d.3.1.1: Papain-like: