Lineage for Protein: automated matches

  1. Root: SCOPe 2.06
  2. 2152203Class d: Alpha and beta proteins (a+b) [53931] (385 folds)
  3. 2154577Fold d.3: Cysteine proteinases [54000] (1 superfamily)
    consists of one alpha-helix and 4 strands of antiparallel beta-sheet and contains the catalytic triad Cys-His-Asn
  4. 2154578Superfamily d.3.1: Cysteine proteinases [54001] (24 families) (S)
    the constitute families differ by insertion into and circular permutation of the common catalytic core made of one alpha-helix and 3-strands of beta-sheet
  5. 2154579Family d.3.1.1: Papain-like [54002] (26 protein domains)
  6. 2154920Protein automated matches [190264] (11 species)
    not a true protein

Species:

  1. 2154921Actinidia arguta [TaxId:64478] [189532] (4 PDB entries)
    1. Domain for 3p5u:
    2. Domain for 3p5v:
    3. Domain for 3p5w:
    4. Domain for 3p5x:
  2. 2154926Carica candamarcensis [TaxId:35926] [189214] (1 PDB entry)
  3. 2154928Cow (Bos taurus) [TaxId:9913] [187053] (8 PDB entries)
    1. Domain for 2dc6:
    2. Domain for 2dc7:
    3. Domain for 2dc8:
    4. Domain for 2dc9:
    5. Domain for 2dca:
    6. Domain for 2dcb:
    7. Domain for 2dcc:
    8. Domain for 2dcd:
  4. 2154937Ervatamia coronaria [311236] (1 PDB entry)
  5. 2154939Human (Homo sapiens) [TaxId:9606] [187102] (7 PDB entries)
    1. Domain for 2c0y:
    2. Domains for 2fq9:
      1. 2154942Domain d2fq9a_: 2fq9 A: [133941]
        automated match to d1ms6a_
        complexed with crj
      2. 2154943Domain d2fq9b_: 2fq9 B: [133942]
        automated match to d1ms6a_
        complexed with crj
    3. Domains for 2fra:
      1. 2154949Domain d2fraa_: 2fra A: [133978]
        automated match to d1ms6a_
        complexed with crv
      2. 2154950Domain d2frab_: 2fra B: [133979]
        automated match to d1ms6a_
        complexed with crv
    4. Domains for 2frq:
      1. 2154940Domain d2frqa_: 2frq A: [133999]
        automated match to d1ms6a_
        complexed with c71
      2. 2154941Domain d2frqb_: 2frq B: [134000]
        automated match to d1ms6a_
        complexed with c71
    5. Domains for 2ft2:
      1. 2154944Domain d2ft2a_: 2ft2 A: [134054]
        automated match to d1ms6a_
        complexed with c28
      2. 2154945Domain d2ft2b_: 2ft2 B: [134055]
        automated match to d1ms6a_
        complexed with c28
    6. Domains for 2fud:
      1. 2154947Domain d2fuda_: 2fud A: [134117]
        automated match to d1ms6a_
        complexed with crl
      2. 2154948Domain d2fudb_: 2fud B: [134118]
        automated match to d1ms6a_
        complexed with crl
    7. Domain for 3pdf:
  6. 2154952Jacaratia mexicana [TaxId:309130] [187452] (1 PDB entry)
  7. 2154957Malaria parasite (Plasmodium falciparum) [TaxId:5833] [188686] (2 PDB entries)
    1. Domains for 3bpm:
      1. 2154962Domain d3bpma_: 3bpm A: [172773]
        automated match to d1yvba1
        complexed with so4
      2. 2154963Domain d3bpmb_: 3bpm B: [172774]
        automated match to d1yvba1
        complexed with so4
    2. Domains for 3bwk:
      1. 2154958Domain d3bwka_: 3bwk A: [172884]
        automated match to d1yvba1
        complexed with c1p, so4
      2. 2154959Domain d3bwkb_: 3bwk B: [172885]
        automated match to d1yvba1
        complexed with c1p, so4
      3. 2154960Domain d3bwkc_: 3bwk C: [172886]
        automated match to d1yvba1
        complexed with c1p, so4
      4. 2154961Domain d3bwkd_: 3bwk D: [172887]
        automated match to d1yvba1
        complexed with c1p, so4
  8. 2154964Mouse (Mus musculus) [TaxId:10090] [229208] (7 PDB entries)
    1. Domains for 4bpv:
      1. 2154987Domain d4bpva_: 4bpv A: [262533]
        automated match to d4bs5a_
        complexed with ofh
      2. 2154988Domain d4bpvb_: 4bpv B: [256572]
        automated match to d4bs5a_
        complexed with ofh
      3. 2154989Domain d4bpvc_: 4bpv C: [262534]
        automated match to d4bs5a_
        complexed with ofh
      4. 2154990Domain d4bpvd_: 4bpv D: [262535]
        automated match to d4bs5a_
        complexed with ofh
      5. 2154991Domain d4bpve_: 4bpv E: [262536]
        automated match to d4bs5a_
        complexed with ofh
      6. 2154992Domain d4bpvk_: 4bpv K: [262537]
        automated match to d4bs5a_
        complexed with ofh
    2. Domains for 4bqv:
      1. 2154976Domain d4bqva_: 4bqv A: [265947]
        automated match to d4bs5a_
        complexed with 8pw
      2. 2154977Domain d4bqvb_: 4bqv B: [265948]
        automated match to d4bs5a_
        complexed with 8pw
      3. 2154978Domain d4bqvc_: 4bqv C: [265949]
        automated match to d4bs5a_
        complexed with 8pw
      4. 2154979Domain d4bqvd_: 4bqv D: [265950]
        automated match to d4bs5a_
        complexed with 8pw
      5. 2154980Domain d4bqve_: 4bqv E: [265951]
        automated match to d4bs5a_
        complexed with 8pw
      6. 2154981Domain d4bqvf_: 4bqv F: [265952]
        automated match to d4bs5a_
        complexed with 8pw
      7. 2154982Domain d4bqvg_: 4bqv G: [265953]
        automated match to d4bs5a_
        complexed with 8pw
      8. 2154983Domain d4bqvh_: 4bqv H: [265954]
        automated match to d4bs5a_
        complexed with 8pw
    3. Domain for 4bs5:
    4. Domains for 4bs6:
      1. 2154965Domain d4bs6a_: 4bs6 A: [265955]
        automated match to d4bs5a_
        complexed with gol, jg7
      2. 2154966Domain d4bs6b_: 4bs6 B: [265956]
        automated match to d4bs5a_
        complexed with gol, jg7
    5. Domain for 4bsq:
    6. Domains for 4mzo:
      1. 2154968Domain d4mzoa_: 4mzo A: [259385]
        automated match to d4bs5a_
        complexed with 2ew
      2. 2154969Domain d4mzob_: 4mzo B: [259384]
        automated match to d4bs5a_
        complexed with 2ew
      3. 2154970Domain d4mzoc_: 4mzo C: [263081]
        automated match to d4bs5a_
        complexed with 2ew
      4. 2154971Domain d4mzod_: 4mzo D: [263082]
        automated match to d4bs5a_
        complexed with 2ew
      5. 2154972Domain d4mzoe_: 4mzo E: [263083]
        automated match to d4bs5a_
        complexed with 2ew
      6. 2154973Domain d4mzof_: 4mzo F: [263084]
        automated match to d4bs5a_
        complexed with 2ew
      7. 2154974Domain d4mzog_: 4mzo G: [263085]
        automated match to d4bs5a_
        complexed with 2ew
      8. 2154975Domain d4mzoh_: 4mzo H: [263086]
        automated match to d4bs5a_
        complexed with 2ew
    7. Domains for 4mzs:
      1. 2154985Domain d4mzsa_: 4mzs A: [259077]
        automated match to d4bs5a_
        complexed with 2ev
      2. 2154986Domain d4mzsb_: 4mzs B: [263087]
        automated match to d4bs5a_
        complexed with 2ev
  9. 2154993Tabernaemontana divaricata [TaxId:52861] [187993] (3 PDB entries)
    1. Domains for 2pns:
      1. 2154994Domain d2pnsa_: 2pns A: [167226]
        automated match to d1o0ea_
        complexed with po4, thj
      2. 2154995Domain d2pnsb_: 2pns B: [167227]
        automated match to d1o0ea_
        complexed with po4, thj
    2. Domains for 2pre:
      1. 2154996Domain d2prea_: 2pre A: [167250]
        automated match to d1o0ea_
        complexed with e64, so4
      2. 2154997Domain d2preb_: 2pre B: [167251]
        automated match to d1o0ea_
        complexed with e64, so4
    3. Domains for 3bcn:
      1. 2154998Domain d3bcna_: 3bcn A: [172538]
        automated match to d1o0ea_
        complexed with bme, e64
      2. 2154999Domain d3bcnb_: 3bcn B: [172539]
        automated match to d1o0ea_
        complexed with bme, e64
  10. 2155000Trypanosoma brucei [TaxId:31286] [188393] (2 PDB entries)
    1. Domain for 2p7u:
    2. Domain for 2p86:
  11. 2272218Ficus carica [TaxId:3494] [315519] (1 PDB entry)

More info for Protein automated matches from d.3.1.1: Papain-like

Timeline for Protein automated matches from d.3.1.1: Papain-like: