SCOPe 2.08: Protein: automated matches

Lineage for Protein: automated matches

Root: SCOPe 2.08
Class c: Alpha and beta proteins (a/b) [51349] (148 folds)

Fold c.1: TIM beta/alpha-barrel [51350] (34 superfamilies)
contains parallel beta-sheet barrel, closed; n=8, S=8; strand order 12345678
the first seven superfamilies have similar phosphate-binding sites

Superfamily c.1.9: Metallo-dependent hydrolases [51556] (19 families)
the beta-sheet barrel is similarly distorted and capped by a C-terminal helix
has transition metal ions bound inside the barrel
Family c.1.9.3: Phosphotriesterase-like [51564] (3 proteins)
automatically mapped to Pfam PF02126
Protein automated matches [190258] (3 species)
not a true protein

Species:

Agrobacterium tumefaciens [TaxId:358] [187045] (2 PDB entries)
1. Domain for 2d2h:
  - Domain d2d2ha_: 2d2h A: [131174]
    automated match to d1jgma_
    complexed with co, tzz
2. Domain for 2d2j:
  - Domain d2d2ja_: 2d2j A: [131175]
    automated match to d1jgma_
    complexed with co, edo
Brevundimonas diminuta [TaxId:293] [194088] (25 PDB entries)
1. Domains for 4e3t:
  1. Domain d4e3ta_: 4e3t A: [194090]
    automated match to d1qw7a_
    complexed with hln, zn
  2. Domain d4e3tb_: 4e3t B: [194089]
    automated match to d1qw7a_
    complexed with hln, zn
2. Domains for 4pbf:
  1. Domain d4pbfa_: 4pbf A: [272288]
    automated match to d1qw7a_
    complexed with cac, mpd, zn
  2. Domain d4pbfb_: 4pbf B: [272300]
    automated match to d1qw7a_
    complexed with cac, mpd, zn
3. Domains for 4pcn:
  1. Domain d4pcna_: 4pcn A: [272292]
    automated match to d1qw7a_
    complexed with mpd, zn
  2. Domain d4pcnb_: 4pcn B: [272293]
    automated match to d1qw7a_
    complexed with mpd, zn
4. Domains for 4pcp:
  1. Domain d4pcpa_: 4pcp A: [272287]
    automated match to d1jgma_
    complexed with cac, zn
  2. Domain d4pcpg_: 4pcp G: [272290]
    automated match to d1jgma_
    complexed with cac, zn
5. Domains for 4xaf:
  1. Domain d4xafa_: 4xaf A: [279941]
    automated match to d1qw7a_
    complexed with cac, mpd, zn
  2. Domain d4xafg_: 4xaf G: [279942]
    automated match to d1qw7a_
    complexed with cac, mpd, zn
6. Domains for 4xag:
  1. Domain d4xaga_: 4xag A: [279937]
    automated match to d1qw7a_
    complexed with cac, mpd, zn
  2. Domain d4xagg_: 4xag G: [279945]
    automated match to d1qw7a_
    complexed with cac, mpd, zn
7. Domains for 4xay:
  1. Domain d4xaya_: 4xay A: [279944]
    automated match to d1qw7a_
    complexed with cac, mpd, zn
  2. Domain d4xayg_: 4xay G: [279943]
    automated match to d1qw7a_
    complexed with cac, mpd, zn
8. Domains for 4xaz:
  1. Domain d4xaza_: 4xaz A: [279938]
    automated match to d1qw7a_
    complexed with mpd, zn
  2. Domain d4xazg_: 4xaz G: [279940]
    automated match to d1qw7a_
    complexed with mpd, zn
9. Domains for 4xd3:
  1. Domain d4xd3a_: 4xd3 A: [280097]
    automated match to d1qw7a_
    complexed with cac, mpd, zn
  2. Domain d4xd3g_: 4xd3 G: [280096]
    automated match to d1qw7a_
    complexed with cac, mpd, zn
10. Domains for 4xd4:
  1. Domain d4xd4a_: 4xd4 A: [280100]
    automated match to d1qw7a_
    complexed with cac, mpd, zn
  2. Domain d4xd4g_: 4xd4 G: [280102]
    automated match to d1qw7a_
    complexed with cac, mpd, zn
11. Domains for 4xd5:
  1. Domain d4xd5a_: 4xd5 A: [280095]
    automated match to d1qw7a_
    complexed with cac, mpd, zn
  2. Domain d4xd5g_: 4xd5 G: [280103]
    automated match to d1qw7a_
    complexed with cac, mpd, zn
12. Domains for 4xd6:
  1. Domain d4xd6a_: 4xd6 A: [280092]
    automated match to d1jgma_
    complexed with cac, mpd, zn
  2. Domain d4xd6g_: 4xd6 G: [280091]
    automated match to d1jgma_
    complexed with cac, mpd, zn
13. Domains for 5w6b:
  1. Domain d5w6ba_: 5w6b A: [361277]
    automated match to d1qw7a_
    complexed with cac, mpd, zn
  2. Domain d5w6bg_: 5w6b G: [361244]
    automated match to d1qw7a_
    complexed with cac, mpd, zn
14. Domains for 5wcp:
  1. Domain d5wcpa_: 5wcp A: [362922]
    automated match to d1jgma_
    complexed with cac, mpd, zn
  2. Domain d5wcpg_: 5wcp G: [362926]
    automated match to d1jgma_
    complexed with cac, mpd, zn
15. Domains for 5wcq:
  1. Domain d5wcqa_: 5wcq A: [354309]
    automated match to d1qw7a_
    complexed with cac, mpd, zn
  2. Domain d5wcqg_: 5wcq G: [354293]
    automated match to d1qw7a_
    complexed with cac, mpd, zn
16. Domains for 5wcr:
  1. Domain d5wcra_: 5wcr A: [362933]
    automated match to d1jgma_
    complexed with cac, mpd, zn
  2. Domain d5wcrg_: 5wcr G: [362924]
    automated match to d1jgma_
    complexed with cac, mpd, zn
17. Domains for 5wcw:
  1. Domain d5wcwa_: 5wcw A: [362929]
    automated match to d1qw7a_
    complexed with cac, mpd, zn
  2. Domain d5wcwg_: 5wcw G: [362941]
    automated match to d1qw7a_
    complexed with cac, mpd, zn
18. Domains for 5wiz:
  1. Domain d5wiza_: 5wiz A: [362938]
    automated match to d1jgmb_
    complexed with cac, mpd, zn
  2. Domain d5wizg_: 5wiz G: [362939]
    automated match to d1jgmb_
    complexed with cac, mpd, zn
19. Domains for 5wj0:
  1. Domain d5wj0a_: 5wj0 A: [362935]
    automated match to d1qw7a_
    complexed with cac, mpd, zn
  2. Domain d5wj0g_: 5wj0 G: [362972]
    automated match to d1qw7a_
    complexed with cac, mpd, zn
20. Domains for 5wms:
  1. Domain d5wmsa_: 5wms A: [362957]
    automated match to d1jgma_
    complexed with cac, mpd, zn
  2. Domain d5wmsg_: 5wms G: [362985]
    automated match to d1jgma_
    complexed with cac, mpd, zn
  3. Domain d5wmsq_: 5wms Q: [362986]
    automated match to d1jgma_
    complexed with cac, mpd, zn
  4. Domain d5wmss_: 5wms S: [362950]
    automated match to d1jgma_
    complexed with cac, mpd, zn
21. Domains for 6aml:
  1. Domain d6amla_: 6aml A: [355688]
    automated match to d1qw7a_
    complexed with cac, mpd, zn
  2. Domain d6amlg_: 6aml G: [355886]
    automated match to d1qw7a_
    complexed with cac, mpd, zn
22. Domains for 6b2f:
  1. Domain d6b2fa_: 6b2f A: [362645]
    automated match to d1jgmb_
    complexed with hln, mpd, zn
  2. Domain d6b2fg_: 6b2f G: [362635]
    automated match to d1jgmb_
    complexed with hln, mpd, zn
23. Domains for 6bh7:
  1. Domain d6bh7a_: 6bh7 A: [362675]
    automated match to d1qw7a_
    complexed with cac, mpd, zn
  2. Domain d6bh7g_: 6bh7 G: [362748]
    automated match to d1qw7a_
    complexed with cac, mpd, zn
24. Domains for 6bhk:
  1. Domain d6bhka_: 6bhk A: [362678]
    automated match to d1qw7a_
    complexed with mpd, zn
  2. Domain d6bhkb_: 6bhk B: [362676]
    automated match to d1qw7a_
    complexed with mpd, zn
  3. Domain d6bhke_: 6bhk E: [362749]
    automated match to d1qw7a_
    complexed with mpd, zn
  4. Domain d6bhkg_: 6bhk G: [362636]
    automated match to d1qw7a_
    complexed with mpd, zn
25. Domains for 6bhl:
  1. Domain d6bhla_: 6bhl A: [362677]
    automated match to d1qw7a_
    complexed with cac, mpd, zn
  2. Domain d6bhlg_: 6bhl G: [362637]
    automated match to d1qw7a_
    complexed with cac, mpd, zn
Escherichia coli [TaxId:562] [363170] (3 PDB entries)
1. Domain for 6fee:
  - Domain d6feea_: 6fee A: [363172]
    automated match to d1jgmb_
    complexed with zn
2. Domain for 6fef:
  - Domain d6fefa_: 6fef A: [363206]
    automated match to d1jgmb_
    complexed with fmt, gol, imd, so4, zn
3. Domains for 6fei:
  1. Domain d6feia_: 6fei A: [363203]
    automated match to d1qw7a_
    complexed with d6k, fmt, zn
  2. Domain d6feib_: 6fei B: [363171]
    automated match to d1qw7a_
    complexed with d6k, fmt, zn

More info for Protein automated matches from c.1.9.3: Phosphotriesterase-like

Timeline for Protein automated matches from c.1.9.3: Phosphotriesterase-like:

Protein automated matches from c.1.9.3: Phosphotriesterase-like first appeared in SCOPe 2.01
Protein automated matches from c.1.9.3: Phosphotriesterase-like appears in SCOPe 2.07