Lineage for Protein: automated matches

  1. Root: SCOPe 2.07
  2. 2530962Class d: Alpha and beta proteins (a+b) [53931] (388 folds)
  3. 2613889Fold d.230: Dodecin subunit-like [88797] (6 superfamilies)
    beta-alpha-beta(2); 2 layers: alpha/beta; antiparallel beta-sheet: order 132
  4. 2613923Superfamily d.230.2: Dodecin-like [89807] (2 families) (S)
  5. 2613924Family d.230.2.1: Dodecin-like [89808] (3 proteins)
    Subunit assembly and a probable biological unit is a dodecamer, hence the name
    automatically mapped to Pfam PF07311
  6. 2613934Protein automated matches [190247] (4 species)
    not a true protein

Species:

  1. 2613935Halobacterium salinarium [TaxId:2242] [187030] (3 PDB entries)
    1. Domain for 2cie:
    2. Domain for 2cif:
    3. Domain for 2cjc:
  2. 2613939Halobacterium salinarum [TaxId:478009] [187023] (12 PDB entries)
    1. Domain for 2cc6:
    2. Domain for 2cc7:
    3. Domain for 2cc8:
    4. Domain for 2cc9:
    5. Domain for 2ccb:
    6. Domain for 2ccc:
    7. Domain for 2vkg:
      • 2613947Domain d2vkga_: 2vkg A: [153224]
        automated match to d1moga_
        protein/DNA complex; complexed with cf4, cl, mg, na, so4
    8. Domain for 2vx9:
    9. Domain for 4b2h:
      • 2613941Domain d4b2ha_: 4b2h A: [197139]
        automated match to d2vkfa1
        protein/DNA complex; complexed with c3f, cl, mg, na, so4
    10. Domain for 4b2j:
    11. Domain for 4b2k:
    12. Domain for 4b2m:
  3. 2613952Thermus thermophilus HB8 [TaxId:300852] [187586] (6 PDB entries)
    1. Domains for 2cz8:
      1. 2613958Domain d2cz8b_: 2cz8 B: [146433]
        Other proteins in same PDB: d2cz8a1
        automated match to d2cz8a1
        complexed with fad, k, po4
      2. 2613959Domain d2cz8c_: 2cz8 C: [146434]
        Other proteins in same PDB: d2cz8a1
        automated match to d2cz8a1
        complexed with fad, k, po4
      3. 2613960Domain d2cz8d_: 2cz8 D: [146435]
        Other proteins in same PDB: d2cz8a1
        automated match to d2cz8a1
        complexed with fad, k, po4
      4. 2613961Domain d2cz8e_: 2cz8 E: [146436]
        Other proteins in same PDB: d2cz8a1
        automated match to d2cz8a1
        complexed with fad, k, po4
      5. 2613962Domain d2cz8f_: 2cz8 F: [146437]
        Other proteins in same PDB: d2cz8a1
        automated match to d2cz8a1
        complexed with fad, k, po4
      6. 2613963Domain d2cz8g_: 2cz8 G: [146438]
        Other proteins in same PDB: d2cz8a1
        automated match to d2cz8a1
        complexed with fad, k, po4
      7. 2613964Domain d2cz8h_: 2cz8 H: [146439]
        Other proteins in same PDB: d2cz8a1
        automated match to d2cz8a1
        complexed with fad, k, po4
    2. Domains for 2ux9:
      1. 2613953Domain d2ux9b_: 2ux9 B: [152259]
        Other proteins in same PDB: d2ux9a1
        automated match to d2ux9a1
        complexed with coa, fmn, na, po4; mutant
      2. 2613954Domain d2ux9c_: 2ux9 C: [152260]
        Other proteins in same PDB: d2ux9a1
        automated match to d2ux9a1
        complexed with coa, fmn, na, po4; mutant
      3. 2613955Domain d2ux9d_: 2ux9 D: [152261]
        Other proteins in same PDB: d2ux9a1
        automated match to d2ux9a1
        complexed with coa, fmn, na, po4; mutant
      4. 2613956Domain d2ux9e_: 2ux9 E: [152262]
        Other proteins in same PDB: d2ux9a1
        automated match to d2ux9a1
        complexed with coa, fmn, na, po4; mutant
      5. 2613957Domain d2ux9f_: 2ux9 F: [152263]
        Other proteins in same PDB: d2ux9a1
        automated match to d2ux9a1
        complexed with coa, fmn, na, po4; mutant
    3. Domains for 2v18:
      1. 2613983Domain d2v18a_: 2v18 A: [152384]
        automated match to d2cz8a1
        complexed with coa, fmn
      2. 2613984Domain d2v18b_: 2v18 B: [152385]
        automated match to d2cz8a1
        complexed with coa, fmn
      3. 2613985Domain d2v18c_: 2v18 C: [152386]
        automated match to d2cz8a1
        complexed with coa, fmn
      4. 2613986Domain d2v18d_: 2v18 D: [152387]
        automated match to d2cz8a1
        complexed with coa, fmn
      5. 2613987Domain d2v18e_: 2v18 E: [152388]
        automated match to d2cz8a1
        complexed with coa, fmn
      6. 2613988Domain d2v18f_: 2v18 F: [152389]
        automated match to d2cz8a1
        complexed with coa, fmn
      7. 2613989Domain d2v18g_: 2v18 G: [152390]
        automated match to d2cz8a1
        complexed with coa, fmn
      8. 2613990Domain d2v18h_: 2v18 H: [152391]
        automated match to d2cz8a1
        complexed with coa, fmn
      9. 2613991Domain d2v18i_: 2v18 I: [152392]
        automated match to d2cz8a1
        complexed with coa, fmn
      10. 2613992Domain d2v18j_: 2v18 J: [152393]
        automated match to d2cz8a1
        complexed with coa, fmn
      11. 2613993Domain d2v18k_: 2v18 K: [152394]
        automated match to d2cz8a1
        complexed with coa, fmn
      12. 2613994Domain d2v18l_: 2v18 L: [152395]
        automated match to d2cz8a1
        complexed with coa, fmn
    4. Domains for 2v19:
      1. 2613995Domain d2v19b_: 2v19 B: [152397]
        Other proteins in same PDB: d2v19a1
        automated match to d2v19i_
        complexed with cl, coa, fmn; mutant
      2. 2613996Domain d2v19c_: 2v19 C: [152398]
        Other proteins in same PDB: d2v19a1
        automated match to d2v19i_
        complexed with cl, coa, fmn; mutant
      3. 2613997Domain d2v19d_: 2v19 D: [152399]
        Other proteins in same PDB: d2v19a1
        automated match to d2v19i_
        complexed with cl, coa, fmn; mutant
      4. 2613998Domain d2v19e_: 2v19 E: [152400]
        Other proteins in same PDB: d2v19a1
        automated match to d2v19i_
        complexed with cl, coa, fmn; mutant
      5. 2613999Domain d2v19f_: 2v19 F: [152401]
        Other proteins in same PDB: d2v19a1
        automated match to d2v19i_
        complexed with cl, coa, fmn; mutant
      6. 2614000Domain d2v19g_: 2v19 G: [152402]
        Other proteins in same PDB: d2v19a1
        automated match to d2v19i_
        complexed with cl, coa, fmn; mutant
      7. 2614001Domain d2v19h_: 2v19 H: [152403]
        Other proteins in same PDB: d2v19a1
        automated match to d2v19i_
        complexed with cl, coa, fmn; mutant
      8. 2614002Domain d2v19i_: 2v19 I: [152404]
        Other proteins in same PDB: d2v19a1
        automated match to d2v19a1
        complexed with cl, coa, fmn; mutant
      9. 2614003Domain d2v19j_: 2v19 J: [152405]
        Other proteins in same PDB: d2v19a1
        automated match to d2v19i_
        complexed with cl, coa, fmn; mutant
      10. 2614004Domain d2v19k_: 2v19 K: [152406]
        Other proteins in same PDB: d2v19a1
        automated match to d2v19i_
        complexed with cl, coa, fmn; mutant
      11. 2614005Domain d2v19l_: 2v19 L: [152407]
        Other proteins in same PDB: d2v19a1
        automated match to d2v19i_
        complexed with cl, coa, fmn; mutant
    5. Domains for 2v21:
      1. 2613977Domain d2v21a_: 2v21 A: [152413]
        automated match to d2cz8a1
        complexed with fmn, na
      2. 2613978Domain d2v21b_: 2v21 B: [152414]
        automated match to d2cz8a1
        complexed with fmn, na
      3. 2613979Domain d2v21c_: 2v21 C: [152415]
        automated match to d2cz8a1
        complexed with fmn, na
      4. 2613980Domain d2v21d_: 2v21 D: [152416]
        automated match to d2cz8a1
        complexed with fmn, na
      5. 2613981Domain d2v21e_: 2v21 E: [152417]
        automated match to d2cz8a1
        complexed with fmn, na
      6. 2613982Domain d2v21f_: 2v21 F: [152418]
        automated match to d2cz8a1
        complexed with fmn, na
    6. Domains for 2vyx:
      1. 2613965Domain d2vyxa_: 2vyx A: [168938]
        automated match to d2cz8a1
        complexed with cl, coa, fmn, na; mutant
      2. 2613966Domain d2vyxb_: 2vyx B: [168939]
        automated match to d2cz8a1
        complexed with cl, coa, fmn, na; mutant
      3. 2613967Domain d2vyxc_: 2vyx C: [168940]
        automated match to d2cz8a1
        complexed with cl, coa, fmn, na; mutant
      4. 2613968Domain d2vyxd_: 2vyx D: [168941]
        automated match to d2cz8a1
        complexed with cl, coa, fmn, na; mutant
      5. 2613969Domain d2vyxe_: 2vyx E: [168942]
        automated match to d2cz8a1
        complexed with cl, coa, fmn, na; mutant
      6. 2613970Domain d2vyxf_: 2vyx F: [168943]
        automated match to d2cz8a1
        complexed with cl, coa, fmn, na; mutant
      7. 2613971Domain d2vyxg_: 2vyx G: [168944]
        automated match to d2cz8a1
        complexed with cl, coa, fmn, na; mutant
      8. 2613972Domain d2vyxh_: 2vyx H: [168945]
        automated match to d2cz8a1
        complexed with cl, coa, fmn, na; mutant
      9. 2613973Domain d2vyxi_: 2vyx I: [168946]
        automated match to d2cz8a1
        complexed with cl, coa, fmn, na; mutant
      10. 2613974Domain d2vyxj_: 2vyx J: [168947]
        automated match to d2cz8a1
        complexed with cl, coa, fmn, na; mutant
      11. 2613975Domain d2vyxk_: 2vyx K: [168948]
        automated match to d2cz8a1
        complexed with cl, coa, fmn, na; mutant
      12. 2613976Domain d2vyxl_: 2vyx L: [168949]
        automated match to d2cz8a1
        complexed with cl, coa, fmn, na; mutant
  4. 2614006Thermus thermophilus [TaxId:274] [187616] (3 PDB entries)
    1. Domains for 2deg:
      1. 2614007Domain d2dega_: 2deg A: [146492]
        automated match to d2cz8a1
        complexed with gol, mn, na
      2. 2614008Domain d2degb_: 2deg B: [146493]
        automated match to d2cz8a1
        complexed with gol, mn, na
      3. 2614009Domain d2degc_: 2deg C: [146494]
        automated match to d2cz8a1
        complexed with gol, mn, na
      4. 2614010Domain d2degd_: 2deg D: [146495]
        automated match to d2cz8a1
        complexed with gol, mn, na
      5. 2614011Domain d2dege_: 2deg E: [146496]
        automated match to d2cz8a1
        complexed with gol, mn, na
      6. 2614012Domain d2degf_: 2deg F: [146497]
        automated match to d2cz8a1
        complexed with gol, mn, na
    2. Domains for 2deh:
      1. 2614013Domain d2deha_: 2deh A: [146498]
        automated match to d2cz8a1
        complexed with cl, na
      2. 2614014Domain d2dehb_: 2deh B: [146499]
        automated match to d2cz8a1
        complexed with cl, na
      3. 2614015Domain d2dehc_: 2deh C: [146500]
        automated match to d2cz8a1
        complexed with cl, na
      4. 2614016Domain d2dehd_: 2deh D: [146501]
        automated match to d2cz8a1
        complexed with cl, na
      5. 2614017Domain d2dehe_: 2deh E: [146502]
        automated match to d2cz8a1
        complexed with cl, na
      6. 2614018Domain d2dehf_: 2deh F: [146503]
        automated match to d2cz8a1
        complexed with cl, na
    3. Domains for 2dev:
      1. 2614019Domain d2deva_: 2dev A: [146504]
        automated match to d2cz8a1
        complexed with cl, cs, na
      2. 2614020Domain d2devb_: 2dev B: [146505]
        automated match to d2cz8a1
        complexed with cl, cs, na
      3. 2614021Domain d2devc_: 2dev C: [146506]
        automated match to d2cz8a1
        complexed with cl, cs, na
      4. 2614022Domain d2devd_: 2dev D: [146507]
        automated match to d2cz8a1
        complexed with cl, cs, na
      5. 2614023Domain d2deve_: 2dev E: [146508]
        automated match to d2cz8a1
        complexed with cl, cs, na
      6. 2614024Domain d2devf_: 2dev F: [146509]
        automated match to d2cz8a1
        complexed with cl, cs, na

More info for Protein automated matches from d.230.2.1: Dodecin-like

Timeline for Protein automated matches from d.230.2.1: Dodecin-like: