Lineage for Protein: automated matches

  1. Root: SCOPe 2.02
  2. 1143363Class c: Alpha and beta proteins (a/b) [51349] (147 folds)
  3. 1156478Fold c.14: ClpP/crotonase [52095] (1 superfamily)
    core: 4 turns of (beta-beta-alpha)n superhelix
  4. 1156479Superfamily c.14.1: ClpP/crotonase [52096] (5 families) (S)
  5. 1157125Family c.14.1.0: automated matches [191346] (1 protein)
    not a true family
  6. 1157126Protein automated matches [190246] (20 species)
    not a true protein

Species:

  1. 1157127Bacillus anthracis [TaxId:261594] [196404] (1 PDB entry)
  2. 1157129Escherichia coli [TaxId:562] [196212] (1 PDB entry)
  3. 1157131Escherichia coli [TaxId:83333] [194688] (2 PDB entries)
    1. Domain for 4elw:
    2. Domain for 4fzw:
  4. 1157134Geobacillus kaustophilus [TaxId:1462] [187671] (1 PDB entry)
  5. 1157137Geobacillus kaustophilus [TaxId:235909] [193499] (1 PDB entry)
  6. 1157139Legionella pneumophila [TaxId:272624] [189004] (1 PDB entry)
  7. 1157141Mycobacterium abscessus [TaxId:36809] [196288] (1 PDB entry)
  8. 1157143Mycobacterium abscessus [TaxId:561007] [189671] (3 PDB entries)
    1. Domains for 3qxz:
      1. 1157144Domain d3qxza_: 3qxz A: [184685]
        automated match to d1uiya_
        complexed with edo, gol, k
      2. 1157145Domain d3qxzb_: 3qxz B: [184686]
        automated match to d1uiya_
        complexed with edo, gol, k
      3. 1157146Domain d3qxzc_: 3qxz C: [184687]
        automated match to d1uiya_
        complexed with edo, gol, k
    2. Domain for 3rsi:
    3. Domain for 3trr:
  9. 1157149Mycobacterium avium [TaxId:1770] [189738] (2 PDB entries)
    1. Domains for 3r9t:
      1. 1157150Domain d3r9ta_: 3r9t A: [184863]
        automated match to d1duba_
        complexed with bez
      2. 1157151Domain d3r9tb_: 3r9t B: [184864]
        automated match to d1duba_
        complexed with bez
      3. 1157152Domain d3r9tc_: 3r9t C: [184865]
        automated match to d1duba_
        complexed with bez
    2. Domains for 3tlf:
      1. 1157153Domain d3tlfa_: 3tlf A: [185871]
        automated match to d1duba_
        complexed with edo
      2. 1157154Domain d3tlfb_: 3tlf B: [185872]
        automated match to d1duba_
        complexed with edo
      3. 1157155Domain d3tlfc_: 3tlf C: [185873]
        automated match to d1duba_
        complexed with edo
      4. 1157156Domain d3tlfd_: 3tlf D: [185874]
        automated match to d1duba_
        complexed with edo
      5. 1157157Domain d3tlff_: 3tlf F: [185875]
        automated match to d1duba_
        complexed with edo
  10. 1157158Mycobacterium avium [TaxId:243243] [189433] (5 PDB entries)
    1. Domain for 3oc7:
    2. Domain for 3p5m:
    3. Domains for 3q1t:
      1. 1157167Domain d3q1ta_: 3q1t A: [184156]
        automated match to d1wz8a1
      2. 1157168Domain d3q1tb_: 3q1t B: [184157]
        automated match to d1wz8a1
      3. 1157169Domain d3q1tc_: 3q1t C: [184158]
        automated match to d1wz8a1
      4. 1157170Domain d3q1td_: 3q1t D: [184159]
        automated match to d1wz8a1
      5. 1157171Domain d3q1te_: 3q1t E: [184160]
        automated match to d1wz8a1
      6. 1157172Domain d3q1tf_: 3q1t F: [184161]
        automated match to d1wz8a1
    4. Domains for 3r0o:
      1. 1157160Domain d3r0oa_: 3r0o A: [184757]
        automated match to d1duba_
        complexed with edo, gol, k
      2. 1157161Domain d3r0ob_: 3r0o B: [184758]
        automated match to d1duba_
        complexed with edo, gol, k
      3. 1157162Domain d3r0oc_: 3r0o C: [184759]
        automated match to d1duba_
        complexed with edo, gol, k
    5. Domains for 3r9s:
      1. 1157164Domain d3r9sa_: 3r9s A: [184860]
        automated match to d1duba_
        complexed with bez, edo
      2. 1157165Domain d3r9sb_: 3r9s B: [184861]
        automated match to d1duba_
        complexed with bez, edo
      3. 1157166Domain d3r9sc_: 3r9s C: [184862]
        automated match to d1duba_
        complexed with bez, edo
  11. 1157173Mycobacterium marinum [TaxId:216594] [189638] (2 PDB entries)
    1. Domains for 3qk8:
      1. 1157174Domain d3qk8a_: 3qk8 A: [184458]
        automated match to d1wz8a1
        complexed with cl, edo, unl
      2. 1157175Domain d3qk8b_: 3qk8 B: [184459]
        automated match to d1wz8a1
        complexed with cl, edo, unl
      3. 1157176Domain d3qk8c_: 3qk8 C: [184460]
        automated match to d1wz8a1
        complexed with cl, edo, unl
      4. 1157177Domain d3qk8d_: 3qk8 D: [184461]
        automated match to d1wz8a1
        complexed with cl, edo, unl
      5. 1157178Domain d3qk8e_: 3qk8 E: [184462]
        automated match to d1wz8a1
        complexed with cl, edo, unl
      6. 1157179Domain d3qk8f_: 3qk8 F: [184463]
        automated match to d1wz8a1
        complexed with cl, edo, unl
    2. Domain for 3qxi:
  12. 1157181Mycobacterium smegmatis [TaxId:246196] [196398] (2 PDB entries)
    1. Domain for 3moy:
    2. Domain for 3pe8:
  13. 1157184Mycobacterium tuberculosis [TaxId:1773] [189677] (1 PDB entry)
  14. 1157188Mycobacterium tuberculosis [TaxId:83332] [187022] (5 PDB entries)
    1. Domains for 2cby:
      1. 1157196Domain d2cbyb_: 2cby B: [130203]
        Other proteins in same PDB: d2cbya1
        automated match to d1tyfa_
      2. 1157197Domain d2cbyc_: 2cby C: [130204]
        Other proteins in same PDB: d2cbya1
        automated match to d1tyfa_
      3. 1157198Domain d2cbyd_: 2cby D: [130205]
        Other proteins in same PDB: d2cbya1
        automated match to d1tyfa_
      4. 1157199Domain d2cbye_: 2cby E: [130206]
        Other proteins in same PDB: d2cbya1
        automated match to d1tyfa_
      5. 1157200Domain d2cbyf_: 2cby F: [130207]
        Other proteins in same PDB: d2cbya1
        automated match to d1tyfa_
      6. 1157201Domain d2cbyg_: 2cby G: [130208]
        Other proteins in same PDB: d2cbya1
        automated match to d1tyfa_
    2. Domains for 2ce3:
      1. 1157208Domain d2ce3a_: 2ce3 A: [130297]
        automated match to d1tyfa_
      2. 1157209Domain d2ce3b_: 2ce3 B: [130298]
        automated match to d1tyfa_
      3. 1157210Domain d2ce3c_: 2ce3 C: [130299]
        automated match to d1tyfa_
      4. 1157211Domain d2ce3d_: 2ce3 D: [130300]
        automated match to d1tyfa_
      5. 1157212Domain d2ce3e_: 2ce3 E: [130301]
        automated match to d1tyfa_
      6. 1157213Domain d2ce3f_: 2ce3 F: [130302]
        automated match to d1tyfa_
      7. 1157214Domain d2ce3g_: 2ce3 G: [130303]
        automated match to d1tyfa_
      8. 1157215Domain d2ce3h_: 2ce3 H: [130304]
        automated match to d1tyfa_
      9. 1157216Domain d2ce3i_: 2ce3 I: [130305]
        automated match to d1tyfa_
      10. 1157217Domain d2ce3j_: 2ce3 J: [130306]
        automated match to d1tyfa_
      11. 1157218Domain d2ce3k_: 2ce3 K: [130307]
        automated match to d1tyfa_
      12. 1157219Domain d2ce3l_: 2ce3 L: [130308]
        automated match to d1tyfa_
      13. 1157220Domain d2ce3m_: 2ce3 M: [130309]
        automated match to d1tyfa_
      14. 1157221Domain d2ce3n_: 2ce3 N: [130310]
        automated match to d1tyfa_
    3. Domains for 3q0g:
      1. 1157202Domain d3q0ga_: 3q0g A: [184108]
        automated match to d1duba_
        complexed with bco, coa, gol, mg
      2. 1157203Domain d3q0gb_: 3q0g B: [184109]
        automated match to d1duba_
        complexed with bco, coa, gol, mg
      3. 1157204Domain d3q0gc_: 3q0g C: [184110]
        automated match to d1duba_
        complexed with bco, coa, gol, mg
      4. 1157205Domain d3q0gd_: 3q0g D: [184111]
        automated match to d1duba_
        complexed with bco, coa, gol, mg
      5. 1157206Domain d3q0ge_: 3q0g E: [184112]
        automated match to d1duba_
        complexed with bco, coa, gol, mg
      6. 1157207Domain d3q0gf_: 3q0g F: [184113]
        automated match to d1duba_
        complexed with bco, coa, gol, mg
    4. Domains for 3q0j:
      1. 1157190Domain d3q0ja_: 3q0j A: [184114]
        automated match to d1duba_
        complexed with caa
      2. 1157191Domain d3q0jb_: 3q0j B: [184115]
        automated match to d1duba_
        complexed with caa
      3. 1157192Domain d3q0jc_: 3q0j C: [184116]
        automated match to d1duba_
        complexed with caa
      4. 1157193Domain d3q0jd_: 3q0j D: [184117]
        automated match to d1duba_
        complexed with caa
      5. 1157194Domain d3q0je_: 3q0j E: [184118]
        automated match to d1duba_
        complexed with caa
      6. 1157195Domain d3q0jf_: 3q0j F: [184119]
        automated match to d1duba_
        complexed with caa
    5. Domain for 4fjw:
  15. 1157222Nostoc sp. PCC 7120 [TaxId:103690] [187895] (2 PDB entries)
    1. Domains for 2j5g:
      1. 1157223Domain d2j5ga_: 2j5g A: [165899]
        automated match to d1o8ua_
        complexed with so4
      2. 1157224Domain d2j5gb_: 2j5g B: [165900]
        automated match to d1o8ua_
        complexed with so4
      3. 1157225Domain d2j5gc_: 2j5g C: [165901]
        automated match to d1o8ua_
        complexed with so4
      4. 1157226Domain d2j5gd_: 2j5g D: [165902]
        automated match to d1o8ua_
        complexed with so4
      5. 1157227Domain d2j5ge_: 2j5g E: [165903]
        automated match to d1o8ua_
        complexed with so4
      6. 1157228Domain d2j5gf_: 2j5g F: [165904]
        automated match to d1o8ua_
        complexed with so4
      7. 1157229Domain d2j5gg_: 2j5g G: [165905]
        automated match to d1o8ua_
        complexed with so4
      8. 1157230Domain d2j5gh_: 2j5g H: [165906]
        automated match to d1o8ua_
        complexed with so4
      9. 1157231Domain d2j5gi_: 2j5g I: [165907]
        automated match to d1o8ua_
        complexed with so4
      10. 1157232Domain d2j5gj_: 2j5g J: [165908]
        automated match to d1o8ua_
        complexed with so4
      11. 1157233Domain d2j5gk_: 2j5g K: [165909]
        automated match to d1o8ua_
        complexed with so4
      12. 1157234Domain d2j5gl_: 2j5g L: [165910]
        automated match to d1o8ua_
        complexed with so4
    2. Domains for 2j5s:
      1. 1157235Domain d2j5sa_: 2j5s A: [165913]
        automated match to d1o8ua_
        complexed with kta, ni
      2. 1157236Domain d2j5sb_: 2j5s B: [165914]
        automated match to d1o8ua_
        complexed with kta, ni
  16. 1157237Rhodopseudomonas palustris [TaxId:1076] [196563] (1 PDB entry)
  17. 1157240Salmonella typhimurium [TaxId:602] [196582] (1 PDB entry)
  18. 1157242Staphylococcus aureus [TaxId:1280] [187693] (2 PDB entries)
    1. Domains for 2f9i:
      1. 1157243Domain d2f9ia_: 2f9i A: [164290]
        automated match to d2f9ya1
        complexed with zn
      2. 1157244Domain d2f9ic_: 2f9i C: [164291]
        automated match to d2f9ya1
        complexed with zn
    2. Domains for 2uzf:
      1. 1157245Domain d2uzfa_: 2uzf A: [168255]
        automated match to d1rjnb_
        complexed with caa
      2. 1157246Domain d2uzfb_: 2uzf B: [168256]
        automated match to d1rjnb_
        complexed with caa
  19. 1157247Streptomyces coelicolor [TaxId:100226] [196597] (1 PDB entry)
  20. 1157249Synechocystis sp. [TaxId:1111708] [197025] (2 PDB entries)
    1. Domain for 4i4z:
    2. Domain for 4i52:

More info for Protein automated matches from c.14.1.0: automated matches

Timeline for Protein automated matches from c.14.1.0: automated matches: