Lineage for Protein: automated matches

  1. Root: SCOPe 2.08
  2. 2826024Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
  3. 2826025Fold c.1: TIM beta/alpha-barrel [51350] (34 superfamilies)
    contains parallel beta-sheet barrel, closed; n=8, S=8; strand order 12345678
    the first seven superfamilies have similar phosphate-binding sites
  4. 2829818Superfamily c.1.8: (Trans)glycosidases [51445] (15 families) (S)
  5. 2831434Family c.1.8.4: Family 1 of glycosyl hydrolase [51521] (6 proteins)
  6. 2831606Protein automated matches [190245] (11 species)
    not a true protein

Species:

  1. 2831607Acidilobus saccharovorans [TaxId:666510] [194546] (2 PDB entries)
    1. Domain for 4ha3:
    2. Domain for 4ha4:
  2. 2831610Camellia sinensis [TaxId:4442] [256516] (3 PDB entries)
    1. Domains for 3wq4:
      1. 2831615Domain d3wq4a_: 3wq4 A: [256517]
        automated match to d1cbga_
        complexed with nag
      2. 2831616Domain d3wq4b_: 3wq4 B: [262443]
        automated match to d1cbga_
        complexed with nag
    2. Domains for 3wq5:
      1. 2831613Domain d3wq5a_: 3wq5 A: [265718]
        automated match to d1cbga_
        complexed with nag, vpa
      2. 2831614Domain d3wq5b_: 3wq5 B: [265719]
        automated match to d1cbga_
        complexed with nag, vpa
    3. Domains for 3wq6:
      1. 2831611Domain d3wq6a_: 3wq6 A: [265720]
        automated match to d1cbga_
        complexed with nag, zpa
      2. 2831612Domain d3wq6b_: 3wq6 B: [265721]
        automated match to d1cbga_
        complexed with nag, zpa
  3. 2831617Pyrococcus furiosus [TaxId:2261] [189762] (2 PDB entries)
    1. Domains for 3apg:
      1. 2831622Domain d3apga1: 3apg A:2-471 [172296]
        Other proteins in same PDB: d3apga2, d3apgb2, d3apgc2, d3apgd2
        automated match to d1qvba_
        complexed with gol
      2. 2831623Domain d3apgb1: 3apg B:2-471 [172297]
        Other proteins in same PDB: d3apga2, d3apgb2, d3apgc2, d3apgd2
        automated match to d1qvba_
        complexed with gol
      3. 2831624Domain d3apgc1: 3apg C:2-471 [172298]
        Other proteins in same PDB: d3apga2, d3apgb2, d3apgc2, d3apgd2
        automated match to d1qvba_
        complexed with gol
      4. 2831625Domain d3apgd1: 3apg D:2-471 [172299]
        Other proteins in same PDB: d3apga2, d3apgb2, d3apgc2, d3apgd2
        automated match to d1qvba_
        complexed with gol
    2. Domains for 3wdp:
      1. 2831618Domain d3wdpp1: 3wdp P:2-472 [239912]
        Other proteins in same PDB: d3wdpp2, d3wdpq2, d3wdpr2, d3wdps2
        automated match to d3wdpq_
        complexed with gol, po4; mutant
      2. 2831619Domain d3wdpq1: 3wdp Q:2-472 [237741]
        Other proteins in same PDB: d3wdpp2, d3wdpq2, d3wdpr2, d3wdps2
        automated match to d1uwsa_
        complexed with gol, po4; mutant
      3. 2831620Domain d3wdpr1: 3wdp R:2-472 [239913]
        Other proteins in same PDB: d3wdpp2, d3wdpq2, d3wdpr2, d3wdps2
        automated match to d3wdpq_
        complexed with gol, po4; mutant
      4. 2831621Domain d3wdps1: 3wdp S:2-472 [239914]
        Other proteins in same PDB: d3wdpp2, d3wdpq2, d3wdpr2, d3wdps2
        automated match to d3wdpq_
        complexed with gol, po4; mutant
  4. 2831626Secale cereale [TaxId:4550] [255749] (3 PDB entries)
    1. Domain for 3aiu:
    2. Domain for 3aiv:
    3. Domain for 3aiw:
  5. 2831630Sulfolobus solfataricus [TaxId:273057] [195161] (4 PDB entries)
    1. Domains for 4eam:
      1. 2831631Domain d4eama_: 4eam A: [195162]
        automated match to d1gowa_
        complexed with cl, mpd, trs
      2. 2831632Domain d4eamb_: 4eam B: [195163]
        automated match to d1gowa_
        complexed with cl, mpd, trs
    2. Domains for 4ean:
      1. 2831633Domain d4eana_: 4ean A: [220391]
        automated match to d4eamb_
        complexed with cl, ind, mpd
      2. 2831634Domain d4eanb_: 4ean B: [220392]
        automated match to d4eamb_
        complexed with cl, ind, mpd
    3. Domains for 5i3d:
      1. 2831637Domain d5i3da_: 5i3d A: [329207]
        automated match to d4eama_
        complexed with act, pe8; mutant
      2. 2831638Domain d5i3db_: 5i3d B: [329226]
        automated match to d4eama_
        complexed with act, pe8; mutant
      3. 2831639Domain d5i3dc_: 5i3d C: [329252]
        automated match to d4eama_
        complexed with act, pe8; mutant
      4. 2831640Domain d5i3dd_: 5i3d D: [329255]
        automated match to d4eama_
        complexed with act, pe8; mutant
    4. Domains for 5ixe:
      1. 2831635Domain d5ixea_: 5ixe A: [319808]
        automated match to d4eama_
        complexed with 14o, cl, mpd
      2. 2831636Domain d5ixeb_: 5ixe B: [319762]
        automated match to d4eama_
        complexed with 14o, cl, mpd
  6. 2831641Thermotoga maritima [TaxId:2336] [187021] (20 PDB entries)
    1. Domains for 2cbu:
      1. 2831652Domain d2cbua_: 2cbu A: [130192]
        automated match to d1od0b_
        complexed with act, ca, cts
      2. 2831653Domain d2cbub_: 2cbu B: [130193]
        automated match to d1od0b_
        complexed with act, ca, cts
    2. Domains for 2cbv:
      1. 2831660Domain d2cbva_: 2cbv A: [130194]
        automated match to d1od0b_
        complexed with act, cgb
      2. 2831661Domain d2cbvb_: 2cbv B: [130195]
        automated match to d1od0b_
        complexed with act, cgb
    3. Domains for 2ces:
      1. 2831680Domain d2cesa_: 2ces A: [130356]
        automated match to d1od0b_
        complexed with act, ca, gim
      2. 2831681Domain d2cesb_: 2ces B: [130357]
        automated match to d1od0b_
        complexed with act, ca, gim
    4. Domains for 2cet:
      1. 2831670Domain d2ceta_: 2cet A: [130358]
        automated match to d1od0b_
        complexed with act, ca, pgi
      2. 2831671Domain d2cetb_: 2cet B: [130359]
        automated match to d1od0b_
        complexed with act, ca, pgi
    5. Domains for 2j75:
      1. 2831656Domain d2j75a_: 2j75 A: [138095]
        automated match to d1od0b_
        complexed with act, ca, noy
      2. 2831657Domain d2j75b_: 2j75 B: [138096]
        automated match to d1od0b_
        complexed with act, ca, noy
    6. Domains for 2j77:
      1. 2831672Domain d2j77a_: 2j77 A: [138097]
        automated match to d1od0b_
        complexed with act, ca, noj
      2. 2831673Domain d2j77b_: 2j77 B: [138098]
        automated match to d1od0b_
        complexed with act, ca, noj
    7. Domains for 2j78:
      1. 2831642Domain d2j78a_: 2j78 A: [138099]
        Other proteins in same PDB: d2j78b3
        automated match to d1od0b_
        complexed with act, ca, edo, gox
      2. 2831643Domain d2j78b2: 2j78 B:2-444 [138100]
        Other proteins in same PDB: d2j78b3
        automated match to d1od0b_
        complexed with act, ca, edo, gox
    8. Domains for 2j79:
      1. 2831664Domain d2j79a_: 2j79 A: [138101]
        automated match to d1od0b_
        complexed with act, ca, gtl
      2. 2831665Domain d2j79b_: 2j79 B: [138102]
        automated match to d1od0b_
        complexed with act, ca, gtl
    9. Domains for 2j7b:
      1. 2831654Domain d2j7ba_: 2j7b A: [138103]
        automated match to d1od0b_
        complexed with act, ca, ntz
      2. 2831655Domain d2j7bb_: 2j7b B: [138104]
        automated match to d1od0b_
        complexed with act, ca, ntz
    10. Domains for 2j7c:
      1. 2831674Domain d2j7ca_: 2j7c A: [138105]
        automated match to d1od0b_
        complexed with act, ca, ide
      2. 2831675Domain d2j7cb_: 2j7c B: [138106]
        automated match to d1od0b_
        complexed with act, ca, ide
    11. Domains for 2j7d:
      1. 2831678Domain d2j7da_: 2j7d A: [138107]
        automated match to d1od0b_
        complexed with act, ca, gi1
      2. 2831679Domain d2j7db_: 2j7d B: [138108]
        automated match to d1od0b_
        complexed with act, ca, gi1
    12. Domains for 2j7e:
      1. 2831676Domain d2j7ea_: 2j7e A: [138109]
        automated match to d1od0b_
        complexed with act, ca, gi2
      2. 2831677Domain d2j7eb_: 2j7e B: [138110]
        automated match to d1od0b_
        complexed with act, ca, gi2
    13. Domains for 2j7f:
      1. 2831682Domain d2j7fa_: 2j7f A: [138111]
        automated match to d1od0b_
        complexed with act, ca, gi3
      2. 2831683Domain d2j7fb_: 2j7f B: [138112]
        automated match to d1od0b_
        complexed with act, ca, gi3
    14. Domains for 2j7g:
      1. 2831658Domain d2j7ga_: 2j7g A: [138113]
        automated match to d1od0b_
        complexed with act, ca, gi4
      2. 2831659Domain d2j7gb_: 2j7g B: [138114]
        automated match to d1od0b_
        complexed with act, ca, gi4
    15. Domains for 2j7h:
      1. 2831666Domain d2j7ha_: 2j7h A: [138115]
        automated match to d1od0b_
        complexed with act, azf, ca
      2. 2831667Domain d2j7hb_: 2j7h B: [138116]
        automated match to d1od0b_
        complexed with act, azf, ca
    16. Domains for 2jal:
      1. 2831668Domain d2jala_: 2jal A: [138241]
        automated match to d1od0b_
        complexed with act, ca, yll
      2. 2831669Domain d2jalb_: 2jal B: [138242]
        automated match to d1od0b_
        complexed with act, ca, yll
    17. Domains for 2vrj:
      1. 2831662Domain d2vrja_: 2vrj A: [153512]
        automated match to d1od0b_
        complexed with act, ca, ncw
      2. 2831663Domain d2vrjb_: 2vrj B: [153513]
        automated match to d1od0b_
        complexed with act, ca, ncw
    18. Domains for 2wbg:
      1. 2831648Domain d2wbga_: 2wbg A: [169183]
        automated match to d1od0b_
        complexed with act, lgs
      2. 2831649Domain d2wbgb_: 2wbg B: [169184]
        automated match to d1od0b_
        complexed with act, lgs
      3. 2831650Domain d2wbgc_: 2wbg C: [169185]
        automated match to d1od0b_
        complexed with act, lgs
      4. 2831651Domain d2wbgd_: 2wbg D: [169186]
        automated match to d1od0b_
        complexed with act, lgs
    19. Domains for 2wc3:
      1. 2831684Domain d2wc3a_: 2wc3 A: [169198]
        automated match to d1od0b_
        complexed with am3
      2. 2831685Domain d2wc3b_: 2wc3 B: [169199]
        automated match to d1od0b_
        complexed with am3
      3. 2831686Domain d2wc3c_: 2wc3 C: [169200]
        automated match to d1od0b_
        complexed with am3
      4. 2831687Domain d2wc3d_: 2wc3 D: [169201]
        automated match to d1od0b_
        complexed with am3
    20. Domains for 2wc4:
      1. 2831644Domain d2wc4a_: 2wc4 A: [169202]
        automated match to d1od0b_
        complexed with act, amf, ca, edo
      2. 2831645Domain d2wc4b_: 2wc4 B: [169203]
        automated match to d1od0b_
        complexed with act, amf, ca, edo
      3. 2831646Domain d2wc4c_: 2wc4 C: [169204]
        automated match to d1od0b_
        complexed with act, amf, ca, edo
      4. 2831647Domain d2wc4d_: 2wc4 D: [169205]
        automated match to d1od0b_
        complexed with act, amf, ca, edo
  7. 2831688Thermotoga maritima [TaxId:243274] [256277] (1 PDB entry)
  8. 2831692Thermotoga neapolitana [TaxId:2337] [329442] (1 PDB entry)
  9. 2831695Thermus thermophilus HB8 [TaxId:300852] [193939] (1 PDB entry)
  10. 2831699Thermus thermophilus [TaxId:274] [193989] (1 PDB entry)
  11. 2831703Wheat (Triticum aestivum) [TaxId:4565] [255115] (4 PDB entries)
    1. Domain for 2dga:
    2. Domain for 3aiq:
    3. Domain for 3air:
    4. Domain for 3ais:

More info for Protein automated matches from c.1.8.4: Family 1 of glycosyl hydrolase

Timeline for Protein automated matches from c.1.8.4: Family 1 of glycosyl hydrolase: