SCOPe 2.08: Protein: automated matches

Lineage for Protein: automated matches

Root: SCOPe 2.08
Class c: Alpha and beta proteins (a/b) [51349] (148 folds)

Fold c.1: TIM beta/alpha-barrel [51350] (34 superfamilies)
contains parallel beta-sheet barrel, closed; n=8, S=8; strand order 12345678
the first seven superfamilies have similar phosphate-binding sites

Superfamily c.1.8: (Trans)glycosidases [51445] (15 families)
Family c.1.8.4: Family 1 of glycosyl hydrolase [51521] (6 proteins)
Protein automated matches [190245] (12 species)
not a true protein

Species:

Acidilobus saccharovorans [TaxId:666510] [194546] (2 PDB entries)
1. Domain for 4ha3:
  - Domain d4ha3a_: 4ha3 A: [194547]
    automated match to d1gowa_
    complexed with gol, mg, peg, trs
2. Domain for 4ha4:
  - Domain d4ha4a_: 4ha4 A: [227416]
    automated match to d4ha3a_
    complexed with gol, na, pg4, pg6, sin
Camellia sinensis [TaxId:4442] [256516] (3 PDB entries)
1. Domains for 3wq4:
  1. Domain d3wq4a_: 3wq4 A: [256517]
    automated match to d1cbga_
    complexed with nag
  2. Domain d3wq4b_: 3wq4 B: [262443]
    automated match to d1cbga_
    complexed with nag
2. Domains for 3wq5:
  1. Domain d3wq5a_: 3wq5 A: [265718]
    automated match to d1cbga_
    complexed with nag, vpa
  2. Domain d3wq5b_: 3wq5 B: [265719]
    automated match to d1cbga_
    complexed with nag, vpa
3. Domains for 3wq6:
  1. Domain d3wq6a_: 3wq6 A: [265720]
    automated match to d1cbga_
    complexed with nag, zpa
  2. Domain d3wq6b_: 3wq6 B: [265721]
    automated match to d1cbga_
    complexed with nag, zpa
Pyrococcus furiosus [TaxId:2261] [189762] (2 PDB entries)
1. Domains for 3apg:
  1. Domain d3apga1: 3apg A:2-471 [172296]
    Other proteins in same PDB: d3apga2, d3apgb2, d3apgc2, d3apgd2
    automated match to d1qvba_
    complexed with gol
  2. Domain d3apgb1: 3apg B:2-471 [172297]
    Other proteins in same PDB: d3apga2, d3apgb2, d3apgc2, d3apgd2
    automated match to d1qvba_
    complexed with gol
  3. Domain d3apgc1: 3apg C:2-471 [172298]
    Other proteins in same PDB: d3apga2, d3apgb2, d3apgc2, d3apgd2
    automated match to d1qvba_
    complexed with gol
  4. Domain d3apgd1: 3apg D:2-471 [172299]
    Other proteins in same PDB: d3apga2, d3apgb2, d3apgc2, d3apgd2
    automated match to d1qvba_
    complexed with gol
2. Domains for 3wdp:
  1. Domain d3wdpp1: 3wdp P:2-472 [239912]
    Other proteins in same PDB: d3wdpp2, d3wdpq2, d3wdpr2, d3wdps2
    automated match to d3wdpq_
    complexed with gol, po4; mutant
  2. Domain d3wdpq1: 3wdp Q:2-472 [237741]
    Other proteins in same PDB: d3wdpp2, d3wdpq2, d3wdpr2, d3wdps2
    automated match to d1uwsa_
    complexed with gol, po4; mutant
  3. Domain d3wdpr1: 3wdp R:2-472 [239913]
    Other proteins in same PDB: d3wdpp2, d3wdpq2, d3wdpr2, d3wdps2
    automated match to d3wdpq_
    complexed with gol, po4; mutant
  4. Domain d3wdps1: 3wdp S:2-472 [239914]
    Other proteins in same PDB: d3wdpp2, d3wdpq2, d3wdpr2, d3wdps2
    automated match to d3wdpq_
    complexed with gol, po4; mutant
Secale cereale [TaxId:4550] [255749] (3 PDB entries)
1. Domain for 3aiu:
  - Domain d3aiua_: 3aiu A: [245155]
    automated match to d1v08a_
    complexed with gol, so4
2. Domain for 3aiv:
  - Domain d3aiva_: 3aiv A: [245156]
    automated match to d1v08a_
    complexed with hbo
3. Domain for 3aiw:
  - Domain d3aiwa_: 3aiw A: [245157]
    automated match to d1v08a_
    complexed with dnf, g2f
Sulfolobus solfataricus [TaxId:273057] [195161] (4 PDB entries)
1. Domains for 4eam:
  1. Domain d4eama_: 4eam A: [195162]
    automated match to d1gowa_
    complexed with cl, mpd, trs
  2. Domain d4eamb_: 4eam B: [195163]
    automated match to d1gowa_
    complexed with cl, mpd, trs
2. Domains for 4ean:
  1. Domain d4eana_: 4ean A: [220391]
    automated match to d4eamb_
    complexed with cl, ind, mpd
  2. Domain d4eanb_: 4ean B: [220392]
    automated match to d4eamb_
    complexed with cl, ind, mpd
3. Domains for 5i3d:
  1. Domain d5i3da_: 5i3d A: [329207]
    automated match to d4eama_
    complexed with act, pe8; mutant
  2. Domain d5i3db_: 5i3d B: [329226]
    automated match to d4eama_
    complexed with act, pe8; mutant
  3. Domain d5i3dc_: 5i3d C: [329252]
    automated match to d4eama_
    complexed with act, pe8; mutant
  4. Domain d5i3dd_: 5i3d D: [329255]
    automated match to d4eama_
    complexed with act, pe8; mutant
4. Domains for 5ixe:
  1. Domain d5ixea_: 5ixe A: [319808]
    automated match to d4eama_
    complexed with 14o, cl, mpd
  2. Domain d5ixeb_: 5ixe B: [319762]
    automated match to d4eama_
    complexed with 14o, cl, mpd
Thermotoga maritima [TaxId:2336] [187021] (20 PDB entries)
1. Domains for 2cbu:
  1. Domain d2cbua_: 2cbu A: [130192]
    automated match to d1od0b_
    complexed with act, ca, cts
  2. Domain d2cbub_: 2cbu B: [130193]
    automated match to d1od0b_
    complexed with act, ca, cts
2. Domains for 2cbv:
  1. Domain d2cbva_: 2cbv A: [130194]
    automated match to d1od0b_
    complexed with act, cgb
  2. Domain d2cbvb_: 2cbv B: [130195]
    automated match to d1od0b_
    complexed with act, cgb
3. Domains for 2ces:
  1. Domain d2cesa_: 2ces A: [130356]
    automated match to d1od0b_
    complexed with act, ca, gim
  2. Domain d2cesb_: 2ces B: [130357]
    automated match to d1od0b_
    complexed with act, ca, gim
4. Domains for 2cet:
  1. Domain d2ceta_: 2cet A: [130358]
    automated match to d1od0b_
    complexed with act, ca, pgi
  2. Domain d2cetb_: 2cet B: [130359]
    automated match to d1od0b_
    complexed with act, ca, pgi
5. Domains for 2j75:
  1. Domain d2j75a_: 2j75 A: [138095]
    automated match to d1od0b_
    complexed with act, ca, noy
  2. Domain d2j75b_: 2j75 B: [138096]
    automated match to d1od0b_
    complexed with act, ca, noy
6. Domains for 2j77:
  1. Domain d2j77a_: 2j77 A: [138097]
    automated match to d1od0b_
    complexed with act, ca, noj
  2. Domain d2j77b_: 2j77 B: [138098]
    automated match to d1od0b_
    complexed with act, ca, noj
7. Domains for 2j78:
  1. Domain d2j78a_: 2j78 A: [138099]
    Other proteins in same PDB: d2j78b3
    automated match to d1od0b_
    complexed with act, ca, edo, gox
  2. Domain d2j78b2: 2j78 B:2-444 [138100]
    Other proteins in same PDB: d2j78b3
    automated match to d1od0b_
    complexed with act, ca, edo, gox
8. Domains for 2j79:
  1. Domain d2j79a_: 2j79 A: [138101]
    automated match to d1od0b_
    complexed with act, ca, gtl
  2. Domain d2j79b_: 2j79 B: [138102]
    automated match to d1od0b_
    complexed with act, ca, gtl
9. Domains for 2j7b:
  1. Domain d2j7ba_: 2j7b A: [138103]
    automated match to d1od0b_
    complexed with act, ca, ntz
  2. Domain d2j7bb_: 2j7b B: [138104]
    automated match to d1od0b_
    complexed with act, ca, ntz
10. Domains for 2j7c:
  1. Domain d2j7ca_: 2j7c A: [138105]
    automated match to d1od0b_
    complexed with act, ca, ide
  2. Domain d2j7cb_: 2j7c B: [138106]
    automated match to d1od0b_
    complexed with act, ca, ide
11. Domains for 2j7d:
  1. Domain d2j7da_: 2j7d A: [138107]
    automated match to d1od0b_
    complexed with act, ca, gi1
  2. Domain d2j7db_: 2j7d B: [138108]
    automated match to d1od0b_
    complexed with act, ca, gi1
12. Domains for 2j7e:
  1. Domain d2j7ea_: 2j7e A: [138109]
    automated match to d1od0b_
    complexed with act, ca, gi2
  2. Domain d2j7eb_: 2j7e B: [138110]
    automated match to d1od0b_
    complexed with act, ca, gi2
13. Domains for 2j7f:
  1. Domain d2j7fa_: 2j7f A: [138111]
    automated match to d1od0b_
    complexed with act, ca, gi3
  2. Domain d2j7fb_: 2j7f B: [138112]
    automated match to d1od0b_
    complexed with act, ca, gi3
14. Domains for 2j7g:
  1. Domain d2j7ga_: 2j7g A: [138113]
    automated match to d1od0b_
    complexed with act, ca, gi4
  2. Domain d2j7gb_: 2j7g B: [138114]
    automated match to d1od0b_
    complexed with act, ca, gi4
15. Domains for 2j7h:
  1. Domain d2j7ha_: 2j7h A: [138115]
    automated match to d1od0b_
    complexed with act, azf, ca
  2. Domain d2j7hb_: 2j7h B: [138116]
    automated match to d1od0b_
    complexed with act, azf, ca
16. Domains for 2jal:
  1. Domain d2jala_: 2jal A: [138241]
    automated match to d1od0b_
    complexed with act, ca, yll
  2. Domain d2jalb_: 2jal B: [138242]
    automated match to d1od0b_
    complexed with act, ca, yll
17. Domains for 2vrj:
  1. Domain d2vrja_: 2vrj A: [153512]
    automated match to d1od0b_
    complexed with act, ca, ncw
  2. Domain d2vrjb_: 2vrj B: [153513]
    automated match to d1od0b_
    complexed with act, ca, ncw
18. Domains for 2wbg:
  1. Domain d2wbga_: 2wbg A: [169183]
    automated match to d1od0b_
    complexed with act, lgs
  2. Domain d2wbgb_: 2wbg B: [169184]
    automated match to d1od0b_
    complexed with act, lgs
  3. Domain d2wbgc_: 2wbg C: [169185]
    automated match to d1od0b_
    complexed with act, lgs
  4. Domain d2wbgd_: 2wbg D: [169186]
    automated match to d1od0b_
    complexed with act, lgs
19. Domains for 2wc3:
  1. Domain d2wc3a_: 2wc3 A: [169198]
    automated match to d1od0b_
    complexed with am3
  2. Domain d2wc3b_: 2wc3 B: [169199]
    automated match to d1od0b_
    complexed with am3
  3. Domain d2wc3c_: 2wc3 C: [169200]
    automated match to d1od0b_
    complexed with am3
  4. Domain d2wc3d_: 2wc3 D: [169201]
    automated match to d1od0b_
    complexed with am3
20. Domains for 2wc4:
  1. Domain d2wc4a_: 2wc4 A: [169202]
    automated match to d1od0b_
    complexed with act, amf, ca, edo
  2. Domain d2wc4b_: 2wc4 B: [169203]
    automated match to d1od0b_
    complexed with act, amf, ca, edo
  3. Domain d2wc4c_: 2wc4 C: [169204]
    automated match to d1od0b_
    complexed with act, amf, ca, edo
  4. Domain d2wc4d_: 2wc4 D: [169205]
    automated match to d1od0b_
    complexed with act, amf, ca, edo
Thermotoga maritima [TaxId:243274] [256277] (1 PDB entry)
- Domains for 4gxp:
  1. Domain d4gxpa_: 4gxp A: [252349]
    automated match to d1oimb_
  2. Domain d4gxpb_: 4gxp B: [252350]
    automated match to d1oimb_
  3. Domain d4gxpc_: 4gxp C: [252351]
    automated match to d1oimb_
Thermotoga neapolitana [TaxId:2337] [329442] (1 PDB entry)
- Domains for 5idi:
  1. Domain d5idia_: 5idi A: [329443]
    automated match to d1oima_
    complexed with act; mutant
  2. Domain d5idib_: 5idi B: [329451]
    automated match to d1oima_
    complexed with act; mutant
Thermus thermophilus HB8 [TaxId:300852] [193939] (1 PDB entry)
- Domains for 4bce:
  1. Domain d4bcea_: 4bce A: [201602]
    automated match to d4bceb_
    mutant
  2. Domain d4bceb_: 4bce B: [193940]
    automated match to d1np2a_
    mutant
  3. Domain d4bcec_: 4bce C: [201603]
    automated match to d4bceb_
    mutant
Thermus thermophilus [TaxId:274] [193989] (1 PDB entry)
- Domains for 3zjk:
  1. Domain d3zjka_: 3zjk A: [193990]
    automated match to d1np2a_
    complexed with cl, gol; mutant
  2. Domain d3zjkb_: 3zjk B: [193991]
    automated match to d1np2a_
    complexed with cl, gol; mutant
  3. Domain d3zjkc_: 3zjk C: [201324]
    automated match to d3zjka_
    complexed with cl, gol; mutant
Wheat (Triticum aestivum) [TaxId:4565] [255115] (4 PDB entries)
1. Domain for 2dga:
  - Domain d2dgaa_: 2dga A: [241556]
    automated match to d1v08a_
    complexed with gol, so4
2. Domain for 3aiq:
  - Domain d3aiqa_: 3aiq A: [245152]
    automated match to d1v08a_
    complexed with hbo
3. Domain for 3air:
  - Domain d3aira_: 3air A: [245153]
    automated match to d1v08a_
    complexed with dnf, g2f
4. Domain for 3ais:
  - Domain d3aisa_: 3ais A: [245154]
    automated match to d1v08a_
    complexed with bgc, hbk; mutant
Uncultured bacterium [TaxId:77133] [421019] (1 PDB entry)
- Domains for 7bbs:
  1. Domain d7bbsb_: 7bbs B: [421020]
    automated match to d1gnxa_
  2. Domain d7bbsa_: 7bbs A: [421045]
    automated match to d1gnxa_

More info for Protein automated matches from c.1.8.4: Family 1 of glycosyl hydrolase

Timeline for Protein automated matches from c.1.8.4: Family 1 of glycosyl hydrolase:

Protein automated matches from c.1.8.4: Family 1 of glycosyl hydrolase first appeared in SCOPe 2.01
Protein automated matches from c.1.8.4: Family 1 of glycosyl hydrolase appears in SCOPe 2.07