SCOPe 2.08: Protein: automated matches

Lineage for Protein: automated matches

Root: SCOPe 2.08
Class f: Membrane and cell surface proteins and peptides [56835] (69 folds)
Fold f.1: Toxins' membrane translocation domains [56836] (5 superfamilies)
multi-helical domains of various folds which is thought to unfold in the membrane
Superfamily f.1.4: Bcl-2 inhibitors of programmed cell death [56854] (2 families)
PROVISIONAL CLASSIFICATION, based on structural similarity to the diphtheria toxin domain
Family f.1.4.1: Bcl-2 inhibitors of programmed cell death [56855] (11 proteins)
Pfam PF00452
Protein automated matches [190236] (3 species)
not a true protein

Species:

Human (Homo sapiens) [TaxId:9606] [188722] (26 PDB entries)
1. Domain for 2kbw:
  - Domain d2kbwa_: 2kbw A: [242458]
    automated match to d2roda1
2. Domain for 2m03:
  - Domain d2m03a1: 2m03 A:5-173 [243055]
    Other proteins in same PDB: d2m03a2, d2m03a3
    automated match to d1g5ja_
3. Domains for 2w3l:
  1. Domain d2w3la_: 2w3l A: [169043]
    automated match to d1gjha_
    complexed with dro
  2. Domain d2w3lb_: 2w3l B: [169044]
    automated match to d1gjha_
    complexed with dro
4. Domains for 2y6w:
  1. Domain d2y6wa_: 2y6w A: [207489]
    automated match to d1zy3a1
    complexed with peg, pge
  2. Domain d2y6wb_: 2y6w B: [207490]
    automated match to d1zy3a1
    complexed with peg, pge
5. Domains for 2yj1:
  1. Domain d2yj1a1: 2yj1 A:1-202 [170824]
    Other proteins in same PDB: d2yj1a2, d2yj1c2
    automated match to d1g5ja_
  2. Domain d2yj1c1: 2yj1 C:83-196 [170825]
    Other proteins in same PDB: d2yj1a2, d2yj1c2
    automated match to d1g5ja_
6. Domain for 3fdl:
  - Domain d3fdla1: 3fdl A:1-194 [175710]
    Other proteins in same PDB: d3fdla2
    automated match to d1g5ja_
7. Domains for 3fdm:
  1. Domain d3fdma1: 3fdm A:1-198 [175711]
    Other proteins in same PDB: d3fdma2, d3fdmb2
    automated match to d1g5ja_
    complexed with edo
  2. Domain d3fdmb1: 3fdm B:1-197 [175712]
    Other proteins in same PDB: d3fdma2, d3fdmb2
    automated match to d1g5ja_
    complexed with edo
  3. Domain d3fdmc_: 3fdm C: [175713]
    Other proteins in same PDB: d3fdma2, d3fdmb2
    automated match to d1g5ja_
    complexed with edo
8. Domains for 3inq:
  1. Domain d3inqa_: 3inq A: [178463]
    automated match to d1g5ja_
    complexed with cl, edo, x0j
  2. Domain d3inqb_: 3inq B: [178464]
    automated match to d1g5ja_
    complexed with cl, edo, x0j
9. Domain for 3kj0:
  - Domain d3kj0a1: 3kj0 A:172-326 [179391]
    Other proteins in same PDB: d3kj0a2
    automated match to d1wsxa_
    complexed with trs; mutant
10. Domain for 3kj1:
  - Domain d3kj1a1: 3kj1 A:172-322 [179392]
    Other proteins in same PDB: d3kj1a2
    automated match to d1wsxa_
    complexed with act, cl, zn; mutant
11. Domain for 3kj2:
  - Domain d3kj2a_: 3kj2 A: [179393]
    automated match to d1wsxa_
    complexed with act, zn; mutant
12. Domains for 3kz0:
  1. Domain d3kz0a_: 3kz0 A: [179819]
    automated match to d1wsxa_
    complexed with so4, zn
  2. Domain d3kz0b_: 3kz0 B: [179820]
    automated match to d1wsxa_
    complexed with so4, zn
13. Domain for 3mk8:
  - Domain d3mk8a_: 3mk8 A: [181325]
    automated match to d1wsxa_
14. Domains for 3r85:
  1. Domain d3r85a_: 3r85 A: [184840]
    automated match to d1g5ja_
    complexed with so4
  2. Domain d3r85b_: 3r85 B: [184841]
    automated match to d1g5ja_
    complexed with so4
  3. Domain d3r85c_: 3r85 C: [184842]
    automated match to d1g5ja_
    complexed with so4
  4. Domain d3r85d_: 3r85 D: [184843]
    automated match to d1g5ja_
    complexed with so4
15. Domains for 3zk6:
  1. Domain d3zk6a1: 3zk6 A:27-197 [197062]
    Other proteins in same PDB: d3zk6a2, d3zk6b2
    automated match to d1g5ja_
    complexed with h1i
  2. Domain d3zk6b1: 3zk6 B:27-197 [197286]
    Other proteins in same PDB: d3zk6a2, d3zk6b2
    automated match to d1g5ja_
    complexed with h1i
16. Domain for 3zln:
  - Domain d3zlna1: 3zln A:27-197 [197288]
    Other proteins in same PDB: d3zlna2
    automated match to d1g5ja_
    complexed with edo, h0y, so4
17. Domain for 3zlo:
  - Domain d3zloa1: 3zlo A:41-197 [197063]
    Other proteins in same PDB: d3zloa2
    automated match to d1g5ja_
    complexed with x8u
18. Domains for 3zlr:
  1. Domain d3zlra1: 3zlr A:1-197 [197065]
    Other proteins in same PDB: d3zlra2
    automated match to d2yj1a_
    complexed with edo, so4, x0b
  2. Domain d3zlrb_: 3zlr B: [197287]
    Other proteins in same PDB: d3zlra2
    automated match to d2yj1a_
    complexed with edo, so4, x0b
19. Domain for 4a1u:
  - Domain d4a1ua1: 4a1u A:83-206 [186691]
    Other proteins in same PDB: d4a1ua2
    automated match to d1g5ja_
    complexed with cl, so4
20. Domains for 4a1w:
  1. Domain d4a1wa1: 4a1w A:83-197 [186692]
    Other proteins in same PDB: d4a1wa2, d4a1wb2, d4a1wd2
    automated match to d1g5ja_
  2. Domain d4a1wb1: 4a1w B:1-197 [186693]
    Other proteins in same PDB: d4a1wa2, d4a1wb2, d4a1wd2
    automated match to d1g5ja_
  3. Domain d4a1wc_: 4a1w C: [186694]
    Other proteins in same PDB: d4a1wa2, d4a1wb2, d4a1wd2
    automated match to d1g5ja_
  4. Domain d4a1wd1: 4a1w D:1-196 [186695]
    Other proteins in same PDB: d4a1wa2, d4a1wb2, d4a1wd2
    automated match to d1g5ja_
21. Domains for 4aq3:
  1. Domain d4aq3a_: 4aq3 A: [201495]
    automated match to d4aq3b_
    complexed with 398
  2. Domain d4aq3b_: 4aq3 B: [195239]
    automated match to d1g5ma_
    complexed with 398
  3. Domain d4aq3c_: 4aq3 C: [201496]
    automated match to d4aq3b_
    complexed with 398
  4. Domain d4aq3d_: 4aq3 D: [201497]
    automated match to d4aq3b_
    complexed with 398
  5. Domain d4aq3e_: 4aq3 E: [201498]
    automated match to d4aq3b_
    complexed with 398
  6. Domain d4aq3f_: 4aq3 F: [201499]
    automated match to d4aq3b_
    complexed with 398
22. Domains for 4c52:
  1. Domain d4c52a1: 4c52 A:1-196 [236513]
    Other proteins in same PDB: d4c52a2, d4c52b2
    automated match to d3fdma_
    complexed with edo, so4, x0d
  2. Domain d4c52b1: 4c52 B:1-198 [236514]
    Other proteins in same PDB: d4c52a2, d4c52b2
    automated match to d3fdma_
    complexed with edo, so4, x0d
23. Domains for 4c5d:
  1. Domain d4c5da1: 4c5d A:1-196 [236515]
    Other proteins in same PDB: d4c5da2, d4c5db2
    automated match to d3fdma_
    complexed with edo, so4, x0r
  2. Domain d4c5db1: 4c5d B:1-198 [236516]
    Other proteins in same PDB: d4c5da2, d4c5db2
    automated match to d3fdma_
    complexed with edo, so4, x0r
24. Domains for 4cim:
  1. Domain d4cima_: 4cim A: [261068]
    automated match to d1zy3a1
    complexed with edo; mutant
  2. Domain d4cimb_: 4cim B: [260881]
    automated match to d1zy3a1
    complexed with edo; mutant
25. Domains for 4cin:
  1. Domain d4cina1: 4cin A:21-197 [260882]
    Other proteins in same PDB: d4cina2, d4cinb2
    automated match to d1ysga_
    complexed with ca, edo, epe
  2. Domain d4cinb1: 4cin B:83-197 [260883]
    Other proteins in same PDB: d4cina2, d4cinb2
    automated match to d1ysga_
    complexed with ca, edo, epe
26. Domain for 4ieh:
  - Domain d4ieha_: 4ieh A: [223148]
    automated match to d4aq3b_
    complexed with 1e9
Mouse (Mus musculus) [TaxId:10090] [187004] (1 PDB entry)
- Domain for 2bzw:
  - Domain d2bzwa2: 2bzw A:27-197 [129562]
    Other proteins in same PDB: d2bzwa3
    automated match to d1lxl__
Nematode (Caenorhabditis elegans) [TaxId:6239] [255025] (1 PDB entry)
- Domain for 2a5y:
  - Domain d2a5ya_: 2a5y A: [126183]
    Other proteins in same PDB: d2a5yb1, d2a5yb2, d2a5yb3, d2a5yc1, d2a5yc2
    automated match to d1ohua_
    complexed with atp, mg

More info for Protein automated matches from f.1.4.1: Bcl-2 inhibitors of programmed cell death

Timeline for Protein automated matches from f.1.4.1: Bcl-2 inhibitors of programmed cell death:

Protein automated matches from f.1.4.1: Bcl-2 inhibitors of programmed cell death first appeared in SCOPe 2.01
Protein automated matches from f.1.4.1: Bcl-2 inhibitors of programmed cell death appears in SCOPe 2.07