SCOPe 2.08: Protein: automated matches

Lineage for Protein: automated matches

Root: SCOPe 2.08
Class d: Alpha and beta proteins (a+b) [53931] (396 folds)
Fold d.68: IF3-like [55199] (8 superfamilies)
beta-alpha-beta-alpha-beta(2); 2 layers; mixed sheet 1243, strand 4 is antiparallel to the rest
Superfamily d.68.6: AlbA-like [82704] (3 families)
Family d.68.6.1: DNA-binding protein AlbA [82705] (2 proteins)
Protein automated matches [190221] (4 species)
not a true protein

Species:

Methanothermobacter thermautotrophicus [TaxId:187420] [195510] (1 PDB entry)
- Domains for 3toe:
  1. Domain d3toea_: 3toe A: [195512]
    automated match to d1nfja_
  2. Domain d3toeb_: 3toe B: [195511]
    automated match to d1nfja_
Pyrococcus horikoshii [TaxId:53953] [188523] (1 PDB entry)
- Domains for 2z7c:
  1. Domain d2z7ca_: 2z7c A: [171096]
    automated match to d1nfja_
    complexed with arg
  2. Domain d2z7cb_: 2z7c B: [171097]
    automated match to d1nfja_
    complexed with arg
  3. Domain d2z7cc_: 2z7c C: [171098]
    automated match to d1nfja_
    complexed with arg
  4. Domain d2z7cd_: 2z7c D: [171099]
    automated match to d1nfja_
    complexed with arg
Sulfolobus shibatae [TaxId:2286] [229739] (2 PDB entries)
1. Domains for 1y9x:
  1. Domain d1y9xa_: 1y9x A: [240995]
    automated match to d3wbma_
  2. Domain d1y9xb_: 1y9x B: [240996]
    automated match to d3wbma_
2. Domains for 3wbm:
  1. Domain d3wbma_: 3wbm A: [229742]
    automated match to d2bkya_
    protein/DNA complex; protein/RNA complex
  2. Domain d3wbmb_: 3wbm B: [229743]
    automated match to d2bkya_
    protein/DNA complex; protein/RNA complex
  3. Domain d3wbmc_: 3wbm C: [229740]
    automated match to d2bkya_
    protein/DNA complex; protein/RNA complex
  4. Domain d3wbmd_: 3wbm D: [229741]
    automated match to d2bkya_
    protein/DNA complex; protein/RNA complex
Sulfolobus solfataricus [TaxId:273057] [186981] (1 PDB entry)
- Domains for 2bky:
  1. Domain d2bkya_: 2bky A: [128715]
    Other proteins in same PDB: d2bkyx_, d2bkyy_
    automated match to d1h0xa_
    complexed with mpd
  2. Domain d2bkyb_: 2bky B: [128716]
    Other proteins in same PDB: d2bkyx_, d2bkyy_
    automated match to d1h0xa_
    complexed with mpd

More info for Protein automated matches from d.68.6.1: DNA-binding protein AlbA

Timeline for Protein automated matches from d.68.6.1: DNA-binding protein AlbA:

Protein automated matches from d.68.6.1: DNA-binding protein AlbA first appeared in SCOPe 2.01
Protein automated matches from d.68.6.1: DNA-binding protein AlbA appears in SCOPe 2.07