Species:

1. African clawed frog (Xenopus laevis) [TaxId:8355] [256268] (1 PDB entry)

   • Domains for 4gaa:

     1. Domain d4gaaa3: 4gaa A:458-607 [252169] Other proteins in same PDB: d4gaaa1, d4gaaa2, d4gaab1, d4gaab2 automated match to d3fh8a3 complexed with bes, zn

     2. Domain d4gaab3: 4gaa B:458-606 [252172] Other proteins in same PDB: d4gaaa1, d4gaaa2, d4gaab1, d4gaab2 automated match to d3fh8a3 complexed with bes, zn

2. Bacillus cereus [TaxId:1396] [188492] (1 PDB entry)

   • Domain for 3bvs:

     • Domain d3bvsa_: 3bvs A: [172871] automated match to d2b6ca1

3. Bacillus cereus [TaxId:222523] [189468] (4 PDB entries)

   1. Domain for 3jx7:

      • Domain d3jx7a_: 3jx7 A: [178899] automated match to d2b6ca1 protein/DNA complex

   2. Domain for 3jxy:

      • Domain d3jxya_: 3jxy A: [178918] automated match to d2b6ca1 protein/DNA complex

   3. Domain for 3jxz:

      • Domain d3jxza_: 3jxz A: [178919] automated match to d2b6ca1 protein/DNA complex

   4. Domain for 3jy1:

      • Domain d3jy1a_: 3jy1 A: [178920] automated match to d2b6ca1 protein/DNA complex

4. Baker's yeast (Saccharomyces cerevisiae) [TaxId:4932] [186980] (6 PDB entries)

   1. Domain for 2bku:

      • Domain d2bkud_: 2bku D: [128713] Other proteins in same PDB: d2bkua_, d2bkub1, d2bkuc_ automated match to d1qgka_ complexed with gtp, mg

   2. Domain for 2bpt:

      • Domain d2bpta_: 2bpt A: [128951] automated match to d1qgka_

   3. Domain for 3bwt:

      • Domain d3bwta_: 3bwt A: [231866] automated match to d3q0mb_

   4. Domains for 3bx2:

      1. Domain d3bx2a_: 3bx2 A: [239169] automated match to d3bx2b_ protein/RNA complex; complexed with na, so4

      2. Domain d3bx2b_: 3bx2 B: [231868] automated match to d3q0mb_ protein/RNA complex; complexed with na, so4

   5. Domains for 3bx3:

      1. Domain d3bx3a_: 3bx3 A: [245396] automated match to d3q0mb_ protein/RNA complex; complexed with so4; mutant

      2. Domain d3bx3b_: 3bx3 B: [245397] automated match to d3q0mb_ protein/RNA complex; complexed with so4; mutant

   6. Domains for 3k49:

      1. Domain d3k49a_: 3k49 A: [179062] automated match to d1m8wb_ protein/RNA complex; complexed with cit

      2. Domain d3k49c_: 3k49 C: [179063] automated match to d1m8wb_ protein/RNA complex; complexed with cit

      3. Domain d3k49e_: 3k49 E: [179064] automated match to d1m8wb_ protein/RNA complex; complexed with cit

5. Baker's yeast (Saccharomyces cerevisiae) [TaxId:559292] [256146] (2 PDB entries)

   1. Domain for 3vyc:

      • Domain d3vyca_: 3vyc A: [250720] automated match to d3gb8a_

   2. Domain for 4xzr:

      • Domain d4xzrb_: 4xzr B: [273939] automated match to d4bqka_

6. Caenorhabditis elegans [TaxId:6239] [271944] (2 PDB entries)

   1. Domain for 4r10:

      • Domain d4r10a_: 4r10 A: [271948] automated match to d1g3ja_ complexed with edo, so4

   2. Domains for 4r11:

      1. Domain d4r11a_: 4r11 A: [271945] automated match to d1g3ja_ complexed with iod

      2. Domain d4r11c_: 4r11 C: [271946] automated match to d1g3ja_ complexed with iod

      3. Domain d4r11e_: 4r11 E: [271947] automated match to d1g3ja_ complexed with iod

7. Human (Homo sapiens) [TaxId:9606] [189070] (29 PDB entries)

   1. Domains for 2jdq:

      1. Domain d2jdqa_: 2jdq A: [230912] Other proteins in same PDB: d2jdqd_, d2jdqe_ automated match to d3tj3a_ protein/RNA complex

      2. Domain d2jdqb_: 2jdq B: [238701] Other proteins in same PDB: d2jdqd_, d2jdqe_ automated match to d2jdqa_ protein/RNA complex

   2. Domain for 2xzg:

      • Domain d2xzga2: 2xzg A:331-357 [207446] Other proteins in same PDB: d2xzga1 automated match to d1c9ib1 complexed with act, gol, peg, vh1

   3. Domain for 3dbs:

      • Domain d3dbsa3: 3dbs A:525-725 [245622] Other proteins in same PDB: d3dbsa1, d3dbsa2, d3dbsa4 automated match to d1e7ua1 complexed with gd9

   4. Domain for 3fey:

      • Domain d3feyc_: 3fey C: [239278] Other proteins in same PDB: d3feyb_ automated match to d1un0b_ protein/RNA complex

   5. Domain for 3jui:

      • Domain d3juia_: 3jui A: [178836] automated match to d1paqa_ complexed with gol

   6. Domain for 3l6x:

      • Domain d3l6xa_: 3l6x A: [247361] automated match to d1xm9a1 complexed with so4

   7. Domains for 3l6y:

      1. Domain d3l6yc_: 3l6y C: [247362] automated match to d1xm9a1

      2. Domain d3l6ye_: 3l6y E: [247363] automated match to d1xm9a1

   8. Domains for 3mdj:

      1. Domain d3mdja4: 3mdj A:615-934 [247647] Other proteins in same PDB: d3mdja1, d3mdja2, d3mdja3, d3mdjb1, d3mdjb2, d3mdjb3, d3mdjc1, d3mdjc2, d3mdjc3 automated match to d2yd0a4 complexed with bes, nag, zn

      2. Domain d3mdjb4: 3mdj B:615-934 [247651] Other proteins in same PDB: d3mdja1, d3mdja2, d3mdja3, d3mdjb1, d3mdjb2, d3mdjb3, d3mdjc1, d3mdjc2, d3mdjc3 automated match to d2yd0a4 complexed with bes, nag, zn

      3. Domain d3mdjc4: 3mdj C:615-934 [247655] Other proteins in same PDB: d3mdja1, d3mdja2, d3mdja3, d3mdjb1, d3mdjb2, d3mdjb3, d3mdjc1, d3mdjc2, d3mdjc3 automated match to d2yd0a4 complexed with bes, nag, zn

   9. Domains for 3qnf:

      1. Domain d3qnfb4: 3qnf B:615-935 [248937] Other proteins in same PDB: d3qnfa1, d3qnfa2, d3qnfa3, d3qnfb1, d3qnfb2, d3qnfb3, d3qnfc1, d3qnfc2, d3qnfc3 automated match to d2yd0a4 complexed with nag, zn

      2. Domain d3qnfc4: 3qnf C:615-937 [248941] Other proteins in same PDB: d3qnfa1, d3qnfa2, d3qnfa3, d3qnfb1, d3qnfb2, d3qnfb3, d3qnfc1, d3qnfc2, d3qnfc3 automated match to d2yd0a4 complexed with nag, zn

   10. Domains for 3se6:

       1. Domain d3se6a4: 3se6 A:638-961 [249388] Other proteins in same PDB: d3se6a1, d3se6a2, d3se6a3, d3se6b1, d3se6b2, d3se6b3 automated match to d2yd0a4 complexed with lys, mes, nag, zn

       2. Domain d3se6b4: 3se6 B:638-961 [249392] Other proteins in same PDB: d3se6a1, d3se6a2, d3se6a3, d3se6b1, d3se6b2, d3se6b3 automated match to d2yd0a4 complexed with lys, mes, nag, zn

   11. Domains for 3tj3:

       1. Domain d3tj3a_: 3tj3 A: [216835] automated match to d1ee5a_

       2. Domain d3tj3b_: 3tj3 B: [216836] automated match to d1ee5a_

   12. Domain for 3zvv:

       • Domain d3zvva3: 3zvv A:525-725 [250877] Other proteins in same PDB: d3zvva1, d3zvva2, d3zvva4 automated match to d1e7ua1 complexed with xaz

   13. Domain for 3zw3:

       • Domain d3zw3a2: 3zw3 A:525-725 [250880] Other proteins in same PDB: d3zw3a1, d3zw3a3 automated match to d1e7ua1 complexed with zw3

   14. Domain for 4anu:

       • Domain d4anua3: 4anu A:544-725 [251081] Other proteins in same PDB: d4anua1, d4anua2, d4anua4 automated match to d1e7ua1 complexed with em7, so4

   15. Domain for 4anv:

       • Domain d4anva3: 4anv A:525-725 [251085] Other proteins in same PDB: d4anva1, d4anva2, d4anva4 automated match to d1e7ua1 complexed with 751, so4

   16. Domain for 4anw:

       • Domain d4anwa3: 4anw A:544-725 [251089] Other proteins in same PDB: d4anwa1, d4anwa2, d4anwa4 automated match to d1e7ua1 complexed with o92, so4

   17. Domain for 4anx:

       • Domain d4anxa3: 4anx A:544-725 [251093] Other proteins in same PDB: d4anxa1, d4anxa2, d4anxa4 automated match to d1e7ua1 complexed with 534

   18. Domain for 4fyq:

       • Domain d4fyqa4: 4fyq A:637-967 [266278] Other proteins in same PDB: d4fyqa1, d4fyqa2, d4fyqa3 automated match to d4p8qa4 complexed with acy, nag, so4, zn

   19. Domain for 4fyr:

       • Domain d4fyra4: 4fyr A:637-967 [266282] Other proteins in same PDB: d4fyra1, d4fyra2, d4fyra3 automated match to d4p8qa4 complexed with acy, bes, nag, so4, zn

   20. Domain for 4fyt:

       • Domain d4fyta4: 4fyt A:637-967 [266286] Other proteins in same PDB: d4fyta1, d4fyta2, d4fyta3 automated match to d4p8qa4 complexed with nag, so4, zn

   21. Domain for 4g55:

       • Domain d4g55a2: 4g55 A:331-357 [221729] Other proteins in same PDB: d4g55a1 automated match to d1bpoa1 complexed with act, dms, edo, peg, vh2

   22. Domain for 4hle:

       • Domain d4hlea3: 4hle A:528-725 [252465] Other proteins in same PDB: d4hlea1, d4hlea2, d4hlea4 automated match to d1e7ua1 complexed with 17v

   23. Domain for 4j6i:

       • Domain d4j6ia3: 4j6i A:525-725 [252817] Other proteins in same PDB: d4j6ia1, d4j6ia2, d4j6ia4 automated match to d1e7ua1 complexed with 1jv

   24. Domains for 4jbs:

       1. Domain d4jbsa4: 4jbs A:638-961 [252875] Other proteins in same PDB: d4jbsa1, d4jbsa2, d4jbsa3, d4jbsb1, d4jbsb2, d4jbsb3 automated match to d2yd0a4 complexed with imd, nag, p52, zn

       2. Domain d4jbsb4: 4jbs B:638-961 [252879] Other proteins in same PDB: d4jbsa1, d4jbsa2, d4jbsa3, d4jbsb1, d4jbsb2, d4jbsb3 automated match to d2yd0a4 complexed with imd, nag, p52, zn

   25. Domains for 4p8q:

       1. Domain d4p8qa4: 4p8q A:707-1025 [261384] Other proteins in same PDB: d4p8qa1, d4p8qa2, d4p8qa3, d4p8qb1, d4p8qb2, d4p8qb3 automated match to d3se6b4 complexed with nag, unl, zn

       2. Domain d4p8qb4: 4p8q B:707-1025 [263459] Other proteins in same PDB: d4p8qa1, d4p8qa2, d4p8qa3, d4p8qb1, d4p8qb2, d4p8qb3 automated match to d4p8qa4 complexed with nag, unl, zn

   26. Domains for 4pj6:

       1. Domain d4pj6a4: 4pj6 A:707-1025 [267177] Other proteins in same PDB: d4pj6a1, d4pj6a2, d4pj6a3, d4pj6b1, d4pj6b2, d4pj6b3 automated match to d4p8qa4 complexed with lys, nag, zn

       2. Domain d4pj6b4: 4pj6 B:707-1025 [267181] Other proteins in same PDB: d4pj6a1, d4pj6a2, d4pj6a3, d4pj6b1, d4pj6b2, d4pj6b3 automated match to d4p8qa4 complexed with lys, nag, zn

   27. Domain for 4urk:

       • Domain d4urka3: 4urk A:544-725 [260599] Other proteins in same PDB: d4urka1, d4urka2, d4urka4 automated match to d1e7ua1 complexed with a82

   28. Domain for 5aen:

       • Domain d5aena3: 5aen A:461-610 [269608] Other proteins in same PDB: d5aena1, d5aena2 automated match to d3u9wa3 complexed with dp8, imd, yb, zn

   29. Domains for 5cu5:

       1. Domain d5cu5a4: 5cu5 A:638-961 [277109] Other proteins in same PDB: d5cu5a1, d5cu5a2, d5cu5a3, d5cu5b1, d5cu5b2, d5cu5b3 automated match to d3se6a4 complexed with man, nag

       2. Domain d5cu5b4: 5cu5 B:638-961 [277114] Other proteins in same PDB: d5cu5a1, d5cu5a2, d5cu5a3, d5cu5b1, d5cu5b2, d5cu5b3 automated match to d3se6a4 complexed with man, nag

8. Mus musculus [TaxId:10090] [272712] (2 PDB entries)

   1. Domain for 4u54:

      • Domain d4u54a_: 4u54 A: [272713] automated match to d3feyc_ complexed with 3c5

   2. Domain for 4zdu:

      • Domain d4zdua_: 4zdu A: [278484] automated match to d3feyc_

9. Neisseria meningitidis [TaxId:122586] [259505] (1 PDB entry)

   • Domain for 4quo:

     • Domain d4quoa4: 4quo A:540-867 [259506] Other proteins in same PDB: d4quoa1, d4quoa2, d4quoa3 automated match to d2gtqa4 complexed with 3dz, gol, imd, so4, zn

10. Oryza sativa [TaxId:39947] [226552] (2 PDB entries)

    1. Domain for 4b8j:

       • Domain d4b8ja_: 4b8j A: [219364] automated match to d1wa5b_

    2. Domain for 4b8o:

       • Domain d4b8oa_: 4b8o A: [251185] automated match to d1q1sc_

11. Rice (Oryza sativa) [TaxId:4530] [256208] (2 PDB entries)

    1. Domain for 4bpl:

       • Domain d4bpla_: 4bpl A: [251295] automated match to d2c1ma_

    2. Domains for 4bqk:

       1. Domain d4bqka_: 4bqk A: [251302] automated match to d1y2ac_ complexed with peg

       2. Domain d4bqkb_: 4bqk B: [251303] automated match to d1y2ac_ complexed with peg

12. Thermoplasma acidophilum [TaxId:273075] [256035] (1 PDB entry)

    • Domains for 3q7j:

      1. Domain d3q7ja4: 3q7j A:490-780 [248798] Other proteins in same PDB: d3q7ja1, d3q7ja2, d3q7ja3, d3q7jb1, d3q7jb2, d3q7jb3 automated match to d1z1wa4 complexed with fbo, zn

      2. Domain d3q7jb4: 3q7j B:490-780 [248802] Other proteins in same PDB: d3q7ja1, d3q7ja2, d3q7ja3, d3q7jb1, d3q7jb2, d3q7jb3 automated match to d1z1wa4 complexed with fbo, zn

More info for Protein automated matches from a.118.1.0: automated matches

Timeline for Protein automated matches from a.118.1.0: automated matches:

• Protein automated matches from a.118.1.0: automated matches first appeared in SCOPe 2.01
  
• Protein automated matches from a.118.1.0: automated matches appears in SCOPe 2.04
  
• Protein automated matches from a.118.1.0: automated matches appears in SCOPe 2.06
  
• Protein automated matches from a.118.1.0: automated matches appears in the current release, SCOPe 2.08