Lineage for Protein: automated matches

  1. Root: SCOPe 2.06
  2. 2089713Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
  3. 2156898Fold c.79: Tryptophan synthase beta subunit-like PLP-dependent enzymes [53685] (1 superfamily)
    consists of two similar domains related by pseudo dyad; duplication
    core: 3 layers, a/b/a; parallel beta-sheet of 4 strands, order 3214
  4. 2156899Superfamily c.79.1: Tryptophan synthase beta subunit-like PLP-dependent enzymes [53686] (2 families) (S)
  5. 2157251Family c.79.1.0: automated matches [191338] (1 protein)
    not a true family
  6. 2157252Protein automated matches [190215] (33 species)
    not a true protein

Species:

  1. 2157253Aquifex aeolicus [TaxId:63363] [188641] (1 PDB entry)
  2. 2157258Bacillus anthracis [TaxId:1392] [337333] (1 PDB entry)
  3. 2157261Bacillus anthracis [TaxId:260799] [259101] (1 PDB entry)
  4. 2157263Bacillus anthracis [TaxId:261594] [229005] (1 PDB entry)
  5. 2157266Brucella abortus [TaxId:430066] [332547] (2 PDB entries)
    1. Domains for 5jis:
      1. 2157271Domain d5jisa_: 5jis A: [332584]
        automated match to d4airb_
      2. 2157272Domain d5jisb_: 5jis B: [332871]
        automated match to d4airb_
    2. Domains for 5jjc:
      1. 2157267Domain d5jjca_: 5jjc A: [332550]
        automated match to d4airb_
        mutant
      2. 2157268Domain d5jjcb_: 5jjc B: [332551]
        automated match to d4airb_
        mutant
      3. 2157269Domain d5jjcc_: 5jjc C: [332558]
        automated match to d4airb_
        mutant
      4. 2157270Domain d5jjcd_: 5jjc D: [332548]
        automated match to d4airb_
        mutant
  6. 2157273Coxiella burnetii [TaxId:227377] [236642] (1 PDB entry)
  7. 2157275Entamoeba (Entamoeba histolytica) [TaxId:5759] [229402] (1 PDB entry)
  8. 2157277Entamoeba histolytica [TaxId:294381] [225437] (5 PDB entries)
    1. Domains for 2pqm:
      1. 2157278Domain d2pqma1: 2pqm A:2-337 [231167]
        Other proteins in same PDB: d2pqma2
        automated match to d4jbla_
        complexed with plp, so4
      2. 2157279Domain d2pqmb_: 2pqm B: [238814]
        Other proteins in same PDB: d2pqma2
        automated match to d2pqma_
        complexed with plp, so4
    2. Domains for 3bm5:
      1. 2157285Domain d3bm5a1: 3bm5 A:2-337 [208660]
        Other proteins in same PDB: d3bm5a2
        automated match to d3spxa_
        complexed with cys, plp, so4
      2. 2157286Domain d3bm5b_: 3bm5 B: [208661]
        Other proteins in same PDB: d3bm5a2
        automated match to d3spxa_
        complexed with cys, plp, so4
    3. Domain for 4il5:
    4. Domains for 4jbl:
      1. 2157282Domain d4jbla1: 4jbl A:1-337 [229420]
        Other proteins in same PDB: d4jbla2
        automated match to d3bm5a_
        complexed with met, so4
      2. 2157283Domain d4jblb_: 4jbl B: [234953]
        Other proteins in same PDB: d4jbla2
        automated match to d4jbla_
        complexed with met, so4
    5. Domains for 4jbn:
      1. 2157280Domain d4jbna_: 4jbn A: [234959]
        Other proteins in same PDB: d4jbnb2
        automated match to d4jbnb_
        complexed with so4
      2. 2157281Domain d4jbnb1: 4jbn B:2-337 [229419]
        Other proteins in same PDB: d4jbnb2
        automated match to d3bm5a_
        complexed with so4
  9. 2157287Escherichia coli [TaxId:562] [186974] (2 PDB entries)
    1. Domains for 2bhs:
      1. 2157288Domain d2bhsb_: 2bhs B: [128547]
        Other proteins in same PDB: d2bhsa1
        automated match to d1o58a_
        complexed with plp
      2. 2157289Domain d2bhsc_: 2bhs C: [128548]
        Other proteins in same PDB: d2bhsa1
        automated match to d1o58a_
        complexed with plp
      3. 2157290Domain d2bhsd_: 2bhs D: [128549]
        Other proteins in same PDB: d2bhsa1
        automated match to d1o58a_
        complexed with plp
    2. Domains for 2bht:
      1. 2157291Domain d2bhtb_: 2bht B: [128551]
        Other proteins in same PDB: d2bhta1
        automated match to d1o58a_
        complexed with plp
      2. 2157292Domain d2bhtc_: 2bht C: [128552]
        Other proteins in same PDB: d2bhta1
        automated match to d1o58a_
        complexed with plp
      3. 2157293Domain d2bhtd_: 2bht D: [128553]
        Other proteins in same PDB: d2bhta1
        automated match to d1o58a_
        complexed with plp
  10. 2157294Fusobacterium nucleatum [TaxId:190304] [333378] (2 PDB entries)
    1. Domain for 5b53:
    2. Domains for 5b55:
      1. 2157295Domain d5b55a_: 5b55 A: [333380]
        automated match to d5d86a_
        complexed with 0jo, peg, plp; mutant
      2. 2157296Domain d5b55b_: 5b55 B: [333379]
        automated match to d5d86a_
        complexed with 0jo, peg, plp; mutant
  11. 2157298Geobacillus kaustophilus [TaxId:235909] [225300] (1 PDB entry)
  12. 2157300Haemophilus influenzae [TaxId:71421] [276702] (2 PDB entries)
    1. Domain for 4ore:
    2. Domain for 5dbh:
  13. 2157303Helicobacter pylori [TaxId:85962] [229231] (3 PDB entries)
    1. Domains for 4i1x:
      1. 2157306Domain d4i1xa_: 4i1x A: [307533]
        automated match to d4r2va_
      2. 2157307Domain d4i1xb_: 4i1x B: [307534]
        automated match to d4r2va_
    2. Domains for 4r2v:
      1. 2157304Domain d4r2va1: 4r2v A:2-306 [263803]
        Other proteins in same PDB: d4r2va2, d4r2vb2
      2. 2157305Domain d4r2vb1: 4r2v B:2-306 [259512]
        Other proteins in same PDB: d4r2va2, d4r2vb2
        automated match to d4i1xa_
    3. Domains for 5hbg:
      1. 2157308Domain d5hbga_: 5hbg A: [314784]
        automated match to d4i1xb_
        complexed with oas
      2. 2157309Domain d5hbgb_: 5hbg B: [315116]
        automated match to d4i1xb_
        complexed with oas
  14. 2157310Human (Homo sapiens) [TaxId:9606] [188411] (3 PDB entries)
    1. Domains for 2rkb:
      1. 2157313Domain d2rkba_: 2rkb A: [168160]
        automated match to d1pwha_
        complexed with k, plp
      2. 2157314Domain d2rkbb_: 2rkb B: [168161]
        automated match to d1pwha_
        complexed with k, plp
      3. 2157315Domain d2rkbc_: 2rkb C: [168162]
        automated match to d1pwha_
        complexed with k, plp
      4. 2157316Domain d2rkbd_: 2rkb D: [168163]
        automated match to d1pwha_
        complexed with k, plp
      5. 2157317Domain d2rkbe_: 2rkb E: [168164]
        automated match to d1pwha_
        complexed with k, plp
    2. Domain for 3l6b:
    3. Domain for 3l6r:
  15. 2157318Lactobacillus plantarum [TaxId:220668] [326845] (1 PDB entry)
  16. 2157323Leishmania donovani [TaxId:5661] [195000] (1 PDB entry)
  17. 2157325Leishmania major [TaxId:5664] [234069] (1 PDB entry)
  18. 2157328Microcystis aeruginosa [TaxId:267872] [257035] (2 PDB entries)
    1. Domains for 4lma:
      1. 2157330Domain d4lmaa_: 4lma A: [257036]
        automated match to d4aira_
        complexed with mpd, plp
      2. 2157331Domain d4lmab_: 4lma B: [261782]
        automated match to d4aira_
        complexed with mpd, plp
    2. Domain for 4lmb:
  19. 2157332Mycobacterium marinum [TaxId:216594] [226125] (1 PDB entry)
  20. 2157334Mycobacterium tuberculosis [TaxId:1773] [188598] (7 PDB entries)
    1. Domain for 2q3b:
    2. Domain for 2q3d:
    3. Domains for 3dki:
      1. 2157340Domain d3dkia_: 3dki A: [174034]
        Other proteins in same PDB: d3dkib2
        automated match to d2bhsa1
        complexed with na
      2. 2157341Domain d3dkib1: 3dki B:1-316 [174035]
        Other proteins in same PDB: d3dkib2
        automated match to d2bhsa1
        complexed with na
    4. Domains for 3fgp:
      1. 2157338Domain d3fgpa_: 3fgp A: [175773]
        Other proteins in same PDB: d3fgpb2
        automated match to d2bhsa1
      2. 2157339Domain d3fgpb1: 3fgp B:1-323 [175774]
        Other proteins in same PDB: d3fgpb2
        automated match to d2bhsa1
    5. Domain for 3zei:
    6. Domain for 5i6d:
    7. Domain for 5i7a:
  21. 2157344Mycobacterium tuberculosis [TaxId:83332] [188609] (9 PDB entries)
    1. Domains for 3dwg:
      1. 2157345Domain d3dwga1: 3dwg A:1-323 [174305]
        Other proteins in same PDB: d3dwga2, d3dwgb2
        automated match to d2bhsa1
        complexed with plp
      2. 2157346Domain d3dwgb1: 3dwg B:1-323 [174306]
        Other proteins in same PDB: d3dwga2, d3dwgb2
        automated match to d2bhsa1
        complexed with plp
    2. Domains for 3dwi:
      1. 2157356Domain d3dwia_: 3dwi A: [174307]
        automated match to d2bhsa1
        complexed with plp, so4
      2. 2157357Domain d3dwib_: 3dwi B: [174308]
        automated match to d2bhsa1
        complexed with plp, so4
    3. Domains for 5i6d:
      1. 2157347Domain d5i6da_: 5i6d A: [321320]
        Other proteins in same PDB: d5i6dc2
        automated match to d3dwia_
        complexed with au6, gol, plp
      2. 2157348Domain d5i6dc1: 5i6d C:1-306 [321321]
        Other proteins in same PDB: d5i6dc2
        automated match to d3dwia_
        complexed with au6, gol, plp
      3. 2157349Domain d5i6dd_: 5i6d D: [321335]
        Other proteins in same PDB: d5i6dc2
        automated match to d3dwia_
        complexed with au6, gol, plp
    4. Domains for 5i7a:
      1. 2157354Domain d5i7aa_: 5i7a A: [321384]
        automated match to d3dwia_
        complexed with 68q, plp
      2. 2157355Domain d5i7ac_: 5i7a C: [321385]
        automated match to d3dwia_
        complexed with 68q, plp
    5. Domains for 5i7h:
      1. 2157362Domain d5i7ha_: 5i7h A: [321377]
        automated match to d3dwia_
        complexed with 68v, cl, plp
      2. 2157363Domain d5i7hb_: 5i7h B: [321407]
        automated match to d3dwia_
        complexed with 68v, cl, plp
      3. 2157364Domain d5i7hc_: 5i7h C: [321310]
        automated match to d3dwia_
        complexed with 68v, cl, plp
    6. Domains for 5i7o:
      1. 2157358Domain d5i7oa_: 5i7o A: [321356]
        automated match to d3dwia_
        complexed with plp, s16
      2. 2157359Domain d5i7ob_: 5i7o B: [321311]
        automated match to d3dwia_
        complexed with plp, s16
      3. 2157360Domain d5i7oc_: 5i7o C: [321337]
        automated match to d3dwia_
        complexed with plp, s16
      4. 2157361Domain d5i7od_: 5i7o D: [321352]
        automated match to d3dwia_
        complexed with plp, s16
    7. Domains for 5i7r:
      1. 2157350Domain d5i7ra_: 5i7r A: [321312]
        automated match to d3dwia_
        complexed with 68w, act, plp
      2. 2157351Domain d5i7rb_: 5i7r B: [321306]
        automated match to d3dwia_
        complexed with 68w, act, plp
    8. Domains for 5iw8:
      1. 2157352Domain d5iw8a_: 5iw8 A: [321343]
        automated match to d3dwia_
        complexed with 6ec, na, plp
      2. 2157353Domain d5iw8b_: 5iw8 B: [321428]
        automated match to d3dwia_
        complexed with 6ec, na, plp
    9. Domains for 5iwc:
      1. 2157365Domain d5iwca_: 5iwc A: [321353]
        automated match to d3dwia_
        complexed with 6eq, plp
      2. 2157366Domain d5iwcb_: 5iwc B: [321357]
        automated match to d3dwia_
        complexed with 6eq, plp
  22. 2157367Mycobacterium ulcerans [TaxId:362242] [226546] (1 PDB entry)
  23. 2157372Norway rat (Rattus norvegicus) [TaxId:10116] [196477] (2 PDB entries)
    1. Domains for 3hmk:
      1. 2157373Domain d3hmka_: 3hmk A: [211130]
        automated match to d3l6cb_
        complexed with mn, plp
      2. 2157374Domain d3hmkb_: 3hmk B: [211131]
        automated match to d3l6cb_
        complexed with mn, plp
    2. Domains for 3l6c:
      1. 2157375Domain d3l6ca_: 3l6c A: [199700]
        automated match to d3l6cb_
        complexed with mli, mn, plp
      2. 2157376Domain d3l6cb_: 3l6c B: [196478]
        automated match to d3l6ba_
        complexed with mli, mn, plp
  24. 2157377Planctopirus limnophila [TaxId:521674] [333102] (1 PDB entry)
  25. 2157380Rhizomucor miehei [TaxId:1031333] [311491] (1 PDB entry)
  26. 2157382Salmonella typhimurium [TaxId:90371] [187759] (13 PDB entries)
    1. Domains for 2gn0:
      1. 2157387Domain d2gn0a1: 2gn0 A:2-325 [164763]
        Other proteins in same PDB: d2gn0a2, d2gn0c2
        automated match to d1v71a1
        complexed with na
      2. 2157388Domain d2gn0b_: 2gn0 B: [164764]
        Other proteins in same PDB: d2gn0a2, d2gn0c2
        automated match to d1v71a1
        complexed with na
      3. 2157389Domain d2gn0c1: 2gn0 C:2-325 [164765]
        Other proteins in same PDB: d2gn0a2, d2gn0c2
        automated match to d1v71a1
        complexed with na
      4. 2157390Domain d2gn0d_: 2gn0 D: [164766]
        Other proteins in same PDB: d2gn0a2, d2gn0c2
        automated match to d1v71a1
        complexed with na
    2. Domains for 2gn1:
      1. 2157419Domain d2gn1a1: 2gn1 A:2-325 [164767]
        Other proteins in same PDB: d2gn1a2
        automated match to d1v71a1
        complexed with na
      2. 2157420Domain d2gn1b_: 2gn1 B: [164768]
        Other proteins in same PDB: d2gn1a2
        automated match to d1v71a1
        complexed with na
    3. Domain for 2gn2:
    4. Domains for 4d8t:
      1. 2157411Domain d4d8ta_: 4d8t A: [219575]
        automated match to d4d92a_
        complexed with ben, cl, so4
      2. 2157412Domain d4d8tb_: 4d8t B: [219576]
        automated match to d4d92c_
        complexed with ben, cl, so4
      3. 2157413Domain d4d8tc_: 4d8t C: [219577]
        automated match to d4d92b_
        complexed with ben, cl, so4
      4. 2157414Domain d4d8td_: 4d8t D: [219578]
        automated match to d4d92a_
        complexed with ben, cl, so4
    5. Domains for 4d8w:
      1. 2157399Domain d4d8wa_: 4d8w A: [219579]
        automated match to d4d92a_
        complexed with ben, cl, edo, pyr, so4
      2. 2157400Domain d4d8wb_: 4d8w B: [219580]
        automated match to d4d92a_
        complexed with ben, cl, edo, pyr, so4
      3. 2157401Domain d4d8wc_: 4d8w C: [219581]
        automated match to d4d92c_
        complexed with ben, cl, edo, pyr, so4
      4. 2157402Domain d4d8wd_: 4d8w D: [219582]
        automated match to d4d92a_
        complexed with ben, cl, edo, pyr, so4
    6. Domains for 4d92:
      1. 2157407Domain d4d92a_: 4d92 A: [195288]
        automated match to d1j0aa_
        complexed with ben, pyr, so4
      2. 2157408Domain d4d92b_: 4d92 B: [195287]
        automated match to d1j0aa_
        complexed with ben, pyr, so4
      3. 2157409Domain d4d92c_: 4d92 C: [195286]
        automated match to d1j0aa_
        complexed with ben, pyr, so4
      4. 2157410Domain d4d92d_: 4d92 D: [195289]
        automated match to d1j0aa_
        complexed with ben, pyr, so4
    7. Domains for 4d96:
      1. 2157415Domain d4d96a_: 4d96 A: [219592]
        automated match to d4d92a_
        complexed with 5pa, ben, so4
      2. 2157416Domain d4d96b_: 4d96 B: [219593]
        automated match to d4d92c_
        complexed with 5pa, ben, so4
      3. 2157417Domain d4d96c_: 4d96 C: [219594]
        automated match to d4d92c_
        complexed with 5pa, ben, so4
      4. 2157418Domain d4d96d_: 4d96 D: [219595]
        automated match to d4d92a_
        complexed with 5pa, ben, so4
    8. Domains for 4d97:
      1. 2157391Domain d4d97a_: 4d97 A: [195292]
        automated match to d1j0aa_
        complexed with ben, dsn
      2. 2157392Domain d4d97b_: 4d97 B: [195290]
        automated match to d1j0aa_
        complexed with ben, dsn
      3. 2157393Domain d4d97c_: 4d97 C: [195291]
        automated match to d1j0aa_
        complexed with ben, dsn
      4. 2157394Domain d4d97d_: 4d97 D: [201644]
        automated match to d4d97a_
        complexed with ben, dsn
    9. Domains for 4d99:
      1. 2157403Domain d4d99a_: 4d99 A: [219598]
        automated match to d4d92a_
        complexed with ben, na, ser
      2. 2157404Domain d4d99b_: 4d99 B: [219599]
        automated match to d4d92b_
        complexed with ben, na, ser
      3. 2157405Domain d4d99c_: 4d99 C: [219600]
        automated match to d4d92b_
        complexed with ben, na, ser
      4. 2157406Domain d4d99d_: 4d99 D: [219601]
        automated match to d4d92a_
        complexed with ben, na, ser
    10. Domains for 4d9b:
      1. 2157383Domain d4d9ba_: 4d9b A: [219602]
        automated match to d4d92a_
        complexed with ben, edo, pmp
      2. 2157384Domain d4d9bb_: 4d9b B: [219603]
        automated match to d4d92a_
        complexed with ben, edo, pmp
      3. 2157385Domain d4d9bc_: 4d9b C: [219604]
        automated match to d4d92c_
        complexed with ben, edo, pmp
      4. 2157386Domain d4d9bd_: 4d9b D: [219605]
        automated match to d4d92a_
        complexed with ben, edo, pmp
    11. Domains for 4d9c:
      1. 2157395Domain d4d9ca_: 4d9c A: [219606]
        automated match to d4d92a_
        complexed with ben, pmp
      2. 2157396Domain d4d9cb_: 4d9c B: [219607]
        automated match to d4d92b_
        complexed with ben, pmp
      3. 2157397Domain d4d9cc_: 4d9c C: [219608]
        automated match to d4d92c_
        complexed with ben, pmp
      4. 2157398Domain d4d9cd_: 4d9c D: [219609]
        automated match to d4d92a_
        complexed with ben, pmp
    12. Domains for 4d9e:
      1. 2157422Domain d4d9ea_: 4d9e A: [219610]
        automated match to d4d92a_
        complexed with ben, lcs
      2. 2157423Domain d4d9eb_: 4d9e B: [219611]
        automated match to d4d92b_
        complexed with ben, lcs
      3. 2157424Domain d4d9ec_: 4d9e C: [219612]
        automated match to d4d92b_
        complexed with ben, lcs
      4. 2157425Domain d4d9ed_: 4d9e D: [219613]
        automated match to d4d92a_
        complexed with ben, lcs
    13. Domains for 4d9f:
      1. 2157426Domain d4d9fa_: 4d9f A: [219614]
        automated match to d4d92a_
        complexed with ben, dcs
      2. 2157427Domain d4d9fb_: 4d9f B: [219615]
        automated match to d4d92b_
        complexed with ben, dcs
      3. 2157428Domain d4d9fc_: 4d9f C: [219616]
        automated match to d4d92c_
        complexed with ben, dcs
      4. 2157429Domain d4d9fd_: 4d9f D: [219617]
        automated match to d4d92a_
        complexed with ben, dcs
  27. 2157430Scapharca broughtonii [TaxId:148819] [343306] (1 PDB entry)
  28. 2157433Soybean (Glycine max) [TaxId:3847] [226469] (2 PDB entries)
    1. Domains for 3vbe:
      1. 2157440Domain d3vbea_: 3vbe A: [217743]
        Other proteins in same PDB: d3vbec2
        automated match to d1oasa_
        complexed with plp
      2. 2157441Domain d3vbeb_: 3vbe B: [217744]
        Other proteins in same PDB: d3vbec2
        automated match to d1d6sa_
        complexed with plp
      3. 2157442Domain d3vbec1: 3vbe C:50-372 [217745]
        Other proteins in same PDB: d3vbec2
        automated match to d1oasa_
        complexed with plp
      4. 2157443Domain d3vbed_: 3vbe D: [217746]
        Other proteins in same PDB: d3vbec2
        automated match to d1oasa_
        complexed with plp
    2. Domains for 3vc3:
      1. 2157434Domain d3vc3a_: 3vc3 A: [217756]
        automated match to d1oasa_
        complexed with c6p; mutant
      2. 2157435Domain d3vc3b_: 3vc3 B: [217757]
        automated match to d1d6sa_
        complexed with c6p; mutant
      3. 2157436Domain d3vc3c_: 3vc3 C: [217758]
        automated match to d1oasa_
        complexed with c6p; mutant
      4. 2157437Domain d3vc3d_: 3vc3 D: [217759]
        automated match to d1oasa_
        complexed with c6p; mutant
      5. 2157438Domain d3vc3e_: 3vc3 E: [217760]
        automated match to d1oasa_
        complexed with c6p; mutant
      6. 2157439Domain d3vc3f_: 3vc3 F: [217761]
        automated match to d1oasa_
        complexed with c6p; mutant
  29. 2157444Staphylococcus aureus [TaxId:426430] [313311] (4 PDB entries)
    1. Domain for 5d84:
    2. Domain for 5d85:
    3. Domain for 5d86:
    4. Domain for 5d87:
  30. 2157449Streptococcus pneumoniae [TaxId:170187] [319363] (1 PDB entry)
  31. 2157452Streptomyces lavendulae [TaxId:1914] [275483] (2 PDB entries)
    1. Domains for 3x43:
      1. 2157455Domain d3x43a_: 3x43 A: [275485]
        automated match to d4ofxa_
        complexed with plp
      2. 2157456Domain d3x43b_: 3x43 B: [275484]
        automated match to d4ofxa_
        complexed with plp
      3. 2157457Domain d3x43c_: 3x43 C: [275486]
        automated match to d4ofxa_
        complexed with plp
      4. 2157458Domain d3x43d_: 3x43 D: [275488]
        automated match to d4ofxa_
        complexed with plp
      5. 2157459Domain d3x43e_: 3x43 E: [275489]
        automated match to d4ofxa_
        complexed with plp
      6. 2157460Domain d3x43f_: 3x43 F: [275487]
        automated match to d4ofxa_
        complexed with plp
      7. 2157461Domain d3x43g_: 3x43 G: [275490]
        automated match to d4ofxa_
        complexed with plp
      8. 2157462Domain d3x43h_: 3x43 H: [275491]
        automated match to d4ofxa_
        complexed with plp
    2. Domains for 3x44:
      1. 2157453Domain d3x44a_: 3x44 A: [275492]
        automated match to d4ofxa_
        complexed with pus; mutant
      2. 2157454Domain d3x44b_: 3x44 B: [275493]
        automated match to d4ofxa_
        complexed with pus; mutant
  32. 2157463Thale cress (Arabidopsis thaliana) [TaxId:3702] [256179] (1 PDB entry)
  33. 2157466Zea mays [TaxId:4577] [312838] (1 PDB entry)

More info for Protein automated matches from c.79.1.0: automated matches

Timeline for Protein automated matches from c.79.1.0: automated matches: