Species:

1. Aquifex aeolicus [TaxId:63363] [188641] (1 PDB entry)

   • Domains for 2zsj:

     1. Domain d2zsja_: 2zsj A: [171466] automated match to d1uima_ complexed with plp

     2. Domain d2zsjb_: 2zsj B: [171467] automated match to d1uima_ complexed with plp

     3. Domain d2zsjc_: 2zsj C: [171468] automated match to d1uima_ complexed with plp

     4. Domain d2zsjd_: 2zsj D: [171469] automated match to d1uima_ complexed with plp

2. Bacillus anthracis [TaxId:260799] [259101] (1 PDB entry)

   • Domain for 4ql4:

     • Domain d4ql4a_: 4ql4 A: [259102] automated match to d3dkib_

3. Bacillus anthracis [TaxId:261594] [229005] (1 PDB entry)

   • Domains for 4neg:

     1. Domain d4nega_: 4neg A: [235764] automated match to d4negb_ complexed with fmt, gol, so4

     2. Domain d4negb_: 4neg B: [229006] automated match to d1beub_ complexed with fmt, gol, so4

4. Coxiella burnetii [TaxId:227377] [236642] (1 PDB entry)

   • Domain for 4ofx:

     • Domain d4ofxa_: 4ofx A: [236643] automated match to d1z7wa1 complexed with na

5. Entamoeba (Entamoeba histolytica) [TaxId:5759] [229402] (1 PDB entry)

   • Domain for 4il5:

     • Domain d4il5b_: 4il5 B: [229403] automated match to d3bm5a_ complexed with ile, so4

6. Entamoeba histolytica [TaxId:294381] [225437] (5 PDB entries)

   1. Domains for 2pqm:

      1. Domain d2pqma_: 2pqm A: [231167] automated match to d4jbla_ complexed with plp, so4

      2. Domain d2pqmb_: 2pqm B: [238814] automated match to d2pqma_ complexed with plp, so4

   2. Domains for 3bm5:

      1. Domain d3bm5a_: 3bm5 A: [208660] automated match to d3spxa_ complexed with cys, plp, so4

      2. Domain d3bm5b_: 3bm5 B: [208661] automated match to d3spxa_ complexed with cys, plp, so4

   3. Domain for 4il5:

      • Domain d4il5a_: 4il5 A: [229404] automated match to d3bm5a_ complexed with ile, so4

   4. Domains for 4jbl:

      1. Domain d4jbla_: 4jbl A: [229420] automated match to d3bm5a_ complexed with met, so4

      2. Domain d4jblb_: 4jbl B: [234953] automated match to d4jbla_ complexed with met, so4

   5. Domains for 4jbn:

      1. Domain d4jbna_: 4jbn A: [234959] automated match to d4jbnb_ complexed with so4

      2. Domain d4jbnb_: 4jbn B: [229419] automated match to d3bm5a_ complexed with so4

7. Escherichia coli [TaxId:562] [186974] (2 PDB entries)

   1. Domains for 2bhs:

      1. Domain d2bhsb_: 2bhs B: [128547] Other proteins in same PDB: d2bhsa1 automated match to d1o58a_ complexed with plp

      2. Domain d2bhsc_: 2bhs C: [128548] Other proteins in same PDB: d2bhsa1 automated match to d1o58a_ complexed with plp

      3. Domain d2bhsd_: 2bhs D: [128549] Other proteins in same PDB: d2bhsa1 automated match to d1o58a_ complexed with plp

   2. Domains for 2bht:

      1. Domain d2bhtb_: 2bht B: [128551] Other proteins in same PDB: d2bhta1 automated match to d1o58a_

      2. Domain d2bhtc_: 2bht C: [128552] Other proteins in same PDB: d2bhta1 automated match to d1o58a_

      3. Domain d2bhtd_: 2bht D: [128553] Other proteins in same PDB: d2bhta1 automated match to d1o58a_

8. Geobacillus kaustophilus [TaxId:235909] [225300] (1 PDB entry)

   • Domain for 2egu:

     • Domain d2egua_: 2egu A: [204122] automated match to d2bhtb_

9. Helicobacter pylori [TaxId:85962] [229231] (2 PDB entries)

   1. Domains for 4i1x:

      1. Domain d4i1xa_: 4i1x A: [229233] automated match to d2q3da_

      2. Domain d4i1xb_: 4i1x B: [229232] automated match to d2q3da_

   2. Domain for 4r2v:

      • Domain d4r2vb_: 4r2v B: [259512] automated match to d4i1xa_

10. Human (Homo sapiens) [TaxId:9606] [188411] (3 PDB entries)

    1. Domains for 2rkb:

       1. Domain d2rkba_: 2rkb A: [168160] automated match to d1pwha_ complexed with k, plp

       2. Domain d2rkbb_: 2rkb B: [168161] automated match to d1pwha_ complexed with k, plp

       3. Domain d2rkbc_: 2rkb C: [168162] automated match to d1pwha_ complexed with k, plp

       4. Domain d2rkbd_: 2rkb D: [168163] automated match to d1pwha_ complexed with k, plp

       5. Domain d2rkbe_: 2rkb E: [168164] automated match to d1pwha_ complexed with k, plp

    2. Domain for 3l6b:

       • Domain d3l6ba_: 3l6b A: [180002] automated match to d1v71a1 complexed with mli, mn, plp

    3. Domain for 3l6r:

       • Domain d3l6ra_: 3l6r A: [180006] automated match to d1v71a1 complexed with mli, mn

11. Leishmania donovani [TaxId:5661] [195000] (1 PDB entry)

    • Domain for 3spx:

      • Domain d3spxa_: 3spx A: [195001] automated match to d1z7wa1 complexed with cl, na, peg

12. Leishmania major [TaxId:5664] [234069] (1 PDB entry)

    • Domains for 4air:

      1. Domain d4aira_: 4air A: [234070] automated match to d3vbec_ complexed with cl, fga

      2. Domain d4airb_: 4air B: [239971] automated match to d4aira_ complexed with cl, fga

13. Microcystis aeruginosa [TaxId:267872] [257035] (2 PDB entries)

    1. Domains for 4lma:

       1. Domain d4lmaa_: 4lma A: [257036] automated match to d4aira_ complexed with mpd, plp

       2. Domain d4lmab_: 4lma B: [261782] automated match to d4aira_ complexed with mpd, plp

    2. Domain for 4lmb:

       • Domain d4lmba_: 4lmb A: [257037] automated match to d4aecb_ complexed with cys, plp

14. Mycobacterium marinum [TaxId:216594] [226125] (1 PDB entry)

    • Domain for 3rr2:

      • Domain d3rr2a_: 3rr2 A: [216005] automated match to d1oasa_

15. Mycobacterium tuberculosis [TaxId:1773] [188598] (5 PDB entries)

    1. Domain for 2q3b:

       • Domain d2q3ba_: 2q3b A: [205740] automated match to d3dkib_ complexed with cl, mpd

    2. Domain for 2q3d:

       • Domain d2q3da_: 2q3d A: [205741] automated match to d3dkib_ complexed with mpd, pda

    3. Domains for 3dki:

       1. Domain d3dkia_: 3dki A: [174034] automated match to d2bhsa1 complexed with na

       2. Domain d3dkib_: 3dki B: [174035] automated match to d2bhsa1 complexed with na

    4. Domains for 3fgp:

       1. Domain d3fgpa_: 3fgp A: [175773] automated match to d2bhsa1

       2. Domain d3fgpb_: 3fgp B: [175774] automated match to d2bhsa1

    5. Domain for 3zei:

       • Domain d3zeia_: 3zei A: [233985] automated match to d2q3da_ complexed with awh, mpd, plp

16. Mycobacterium tuberculosis [TaxId:83332] [188609] (2 PDB entries)

    1. Domains for 3dwg:

       1. Domain d3dwga_: 3dwg A: [174305] automated match to d2bhsa1 complexed with plp

       2. Domain d3dwgb_: 3dwg B: [174306] automated match to d2bhsa1 complexed with plp

    2. Domains for 3dwi:

       1. Domain d3dwia_: 3dwi A: [174307] automated match to d2bhsa1 complexed with plp, so4

       2. Domain d3dwib_: 3dwi B: [174308] automated match to d2bhsa1 complexed with plp, so4

17. Mycobacterium ulcerans [TaxId:362242] [226546] (1 PDB entry)

    • Domains for 4i1y:

      1. Domain d4i1ya_: 4i1y A: [222861] automated match to d1oasa_ complexed with cl, so4

      2. Domain d4i1yb_: 4i1y B: [222862] automated match to d1oasa_ complexed with cl, so4

      3. Domain d4i1yc_: 4i1y C: [222863] automated match to d1oasa_ complexed with cl, so4

      4. Domain d4i1yd_: 4i1y D: [222864] automated match to d1oasa_ complexed with cl, so4

18. Norway rat (Rattus norvegicus) [TaxId:10116] [196477] (2 PDB entries)

    1. Domains for 3hmk:

       1. Domain d3hmka_: 3hmk A: [211130] automated match to d3l6cb_ complexed with mn, plp

       2. Domain d3hmkb_: 3hmk B: [211131] automated match to d3l6cb_ complexed with mn, plp

    2. Domains for 3l6c:

       1. Domain d3l6ca_: 3l6c A: [199700] automated match to d3l6cb_ complexed with mli, mn, plp

       2. Domain d3l6cb_: 3l6c B: [196478] automated match to d3l6ba_ complexed with mli, mn, plp

19. Salmonella typhimurium [TaxId:90371] [187759] (13 PDB entries)

    1. Domains for 2gn0:

       1. Domain d2gn0a_: 2gn0 A: [164763] automated match to d1v71a1 complexed with na

       2. Domain d2gn0b_: 2gn0 B: [164764] automated match to d1v71a1 complexed with na

       3. Domain d2gn0c_: 2gn0 C: [164765] automated match to d1v71a1 complexed with na

       4. Domain d2gn0d_: 2gn0 D: [164766] automated match to d1v71a1 complexed with na

    2. Domains for 2gn1:

       1. Domain d2gn1a_: 2gn1 A: [164767] automated match to d1v71a1 complexed with na

       2. Domain d2gn1b_: 2gn1 B: [164768] automated match to d1v71a1 complexed with na

    3. Domain for 2gn2:

       • Domain d2gn2a_: 2gn2 A: [164769] automated match to d1v71a1 complexed with c5p, na

    4. Domains for 4d8t:

       1. Domain d4d8ta_: 4d8t A: [219575] automated match to d4d92a_ complexed with ben, cl, so4

       2. Domain d4d8tb_: 4d8t B: [219576] automated match to d4d92c_ complexed with ben, cl, so4

       3. Domain d4d8tc_: 4d8t C: [219577] automated match to d4d92b_ complexed with ben, cl, so4

       4. Domain d4d8td_: 4d8t D: [219578] automated match to d4d92a_ complexed with ben, cl, so4

    5. Domains for 4d8w:

       1. Domain d4d8wa_: 4d8w A: [219579] automated match to d4d92a_ complexed with ben, cl, edo, pyr, so4

       2. Domain d4d8wb_: 4d8w B: [219580] automated match to d4d92a_ complexed with ben, cl, edo, pyr, so4

       3. Domain d4d8wc_: 4d8w C: [219581] automated match to d4d92c_ complexed with ben, cl, edo, pyr, so4

       4. Domain d4d8wd_: 4d8w D: [219582] automated match to d4d92a_ complexed with ben, cl, edo, pyr, so4

    6. Domains for 4d92:

       1. Domain d4d92a_: 4d92 A: [195288] automated match to d1j0aa_ complexed with ben, pyr, so4

       2. Domain d4d92b_: 4d92 B: [195287] automated match to d1j0aa_ complexed with ben, pyr, so4

       3. Domain d4d92c_: 4d92 C: [195286] automated match to d1j0aa_ complexed with ben, pyr, so4

       4. Domain d4d92d_: 4d92 D: [195289] automated match to d1j0aa_ complexed with ben, pyr, so4

    7. Domains for 4d96:

       1. Domain d4d96a_: 4d96 A: [219592] automated match to d4d92a_ complexed with 5pa, ben, so4

       2. Domain d4d96b_: 4d96 B: [219593] automated match to d4d92c_ complexed with 5pa, ben, so4

       3. Domain d4d96c_: 4d96 C: [219594] automated match to d4d92c_ complexed with 5pa, ben, so4

       4. Domain d4d96d_: 4d96 D: [219595] automated match to d4d92a_ complexed with 5pa, ben, so4

    8. Domains for 4d97:

       1. Domain d4d97a_: 4d97 A: [195292] automated match to d1j0aa_ complexed with ben, dsn

       2. Domain d4d97b_: 4d97 B: [195290] automated match to d1j0aa_ complexed with ben, dsn

       3. Domain d4d97c_: 4d97 C: [195291] automated match to d1j0aa_ complexed with ben, dsn

       4. Domain d4d97d_: 4d97 D: [201644] automated match to d4d97a_ complexed with ben, dsn

    9. Domains for 4d99:

       1. Domain d4d99a_: 4d99 A: [219598] automated match to d4d92a_ complexed with ben, na, ser

       2. Domain d4d99b_: 4d99 B: [219599] automated match to d4d92b_ complexed with ben, na, ser

       3. Domain d4d99c_: 4d99 C: [219600] automated match to d4d92b_ complexed with ben, na, ser

       4. Domain d4d99d_: 4d99 D: [219601] automated match to d4d92a_ complexed with ben, na, ser

    10. Domains for 4d9b:

        1. Domain d4d9ba_: 4d9b A: [219602] automated match to d4d92a_ complexed with ben, edo, pmp

        2. Domain d4d9bb_: 4d9b B: [219603] automated match to d4d92a_ complexed with ben, edo, pmp

        3. Domain d4d9bc_: 4d9b C: [219604] automated match to d4d92c_ complexed with ben, edo, pmp

        4. Domain d4d9bd_: 4d9b D: [219605] automated match to d4d92a_ complexed with ben, edo, pmp

    11. Domains for 4d9c:

        1. Domain d4d9ca_: 4d9c A: [219606] automated match to d4d92a_ complexed with ben, pmp

        2. Domain d4d9cb_: 4d9c B: [219607] automated match to d4d92b_ complexed with ben, pmp

        3. Domain d4d9cc_: 4d9c C: [219608] automated match to d4d92c_ complexed with ben, pmp

        4. Domain d4d9cd_: 4d9c D: [219609] automated match to d4d92a_ complexed with ben, pmp

    12. Domains for 4d9e:

        1. Domain d4d9ea_: 4d9e A: [219610] automated match to d4d92a_ complexed with ben, lcs

        2. Domain d4d9eb_: 4d9e B: [219611] automated match to d4d92b_ complexed with ben, lcs

        3. Domain d4d9ec_: 4d9e C: [219612] automated match to d4d92b_ complexed with ben, lcs

        4. Domain d4d9ed_: 4d9e D: [219613] automated match to d4d92a_ complexed with ben, lcs

    13. Domains for 4d9f:

        1. Domain d4d9fa_: 4d9f A: [219614] automated match to d4d92a_ complexed with ben, dcs

        2. Domain d4d9fb_: 4d9f B: [219615] automated match to d4d92b_ complexed with ben, dcs

        3. Domain d4d9fc_: 4d9f C: [219616] automated match to d4d92c_ complexed with ben, dcs

        4. Domain d4d9fd_: 4d9f D: [219617] automated match to d4d92a_ complexed with ben, dcs

20. Soybean (Glycine max) [TaxId:3847] [226469] (2 PDB entries)

    1. Domains for 3vbe:

       1. Domain d3vbea_: 3vbe A: [217743] automated match to d1oasa_ complexed with plp

       2. Domain d3vbeb_: 3vbe B: [217744] automated match to d1d6sa_ complexed with plp

       3. Domain d3vbec_: 3vbe C: [217745] automated match to d1oasa_ complexed with plp

       4. Domain d3vbed_: 3vbe D: [217746] automated match to d1oasa_ complexed with plp

    2. Domains for 3vc3:

       1. Domain d3vc3a_: 3vc3 A: [217756] automated match to d1oasa_ complexed with c6p; mutant

       2. Domain d3vc3b_: 3vc3 B: [217757] automated match to d1d6sa_ complexed with c6p; mutant

       3. Domain d3vc3c_: 3vc3 C: [217758] automated match to d1oasa_ complexed with c6p; mutant

       4. Domain d3vc3d_: 3vc3 D: [217759] automated match to d1oasa_ complexed with c6p; mutant

       5. Domain d3vc3e_: 3vc3 E: [217760] automated match to d1oasa_ complexed with c6p; mutant

       6. Domain d3vc3f_: 3vc3 F: [217761] automated match to d1oasa_ complexed with c6p; mutant

21. Thale cress (Arabidopsis thaliana) [TaxId:3702] [256179] (1 PDB entry)

    • Domains for 4aec:

      1. Domain d4aeca_: 4aec A: [251017] automated match to d3vbec_ complexed with act, gol, plp

      2. Domain d4aecb_: 4aec B: [251018] automated match to d3vbec_ complexed with act, gol, plp

More info for Protein automated matches from c.79.1.0: automated matches

Timeline for Protein automated matches from c.79.1.0: automated matches:

• Protein automated matches from c.79.1.0: automated matches first appeared in SCOPe 2.01
  
• Protein automated matches from c.79.1.0: automated matches appears in SCOPe 2.03
  
• Protein automated matches from c.79.1.0: automated matches appears in SCOPe 2.05
  
• Protein automated matches from c.79.1.0: automated matches appears in the current release, SCOPe 2.08