Lineage for Protein: automated matches

  1. Root: SCOPe 2.07
  2. 2530962Class d: Alpha and beta proteins (a+b) [53931] (388 folds)
  3. 2542783Fold d.17: Cystatin-like [54402] (7 superfamilies)
    Core: alpha-beta(4); helix packs against coiled antiparallel beta-sheet
  4. 2543372Superfamily d.17.4: NTF2-like [54427] (31 families) (S)
    has a beta-alpha(2)-beta insertion after the main helix
  5. 2544255Family d.17.4.0: automated matches [191337] (1 protein)
    not a true family
  6. 2544256Protein automated matches [190205] (33 species)
    not a true protein

Species:

  1. 2544257Bacillus cereus [TaxId:222523] [188845] (1 PDB entry)
  2. 2544260Bartonella birtlesii [TaxId:111504] [256329] (1 PDB entry)
  3. 2544262Bartonella grahamii [TaxId:634504] [256352] (2 PDB entries)
    1. Domain for 4kz1:
    2. Domains for 4nhf:
      1. 2544263Domain d4nhfa_: 4nhf A: [253953]
        automated match to d2bhma1
        complexed with ca
      2. 2544264Domain d4nhfb_: 4nhf B: [253954]
        automated match to d2bhma1
        complexed with ca
      3. 2544265Domain d4nhfc_: 4nhf C: [253955]
        automated match to d2bhma1
        complexed with ca
      4. 2544266Domain d4nhfd_: 4nhf D: [253956]
        automated match to d2bhma1
        complexed with ca
      5. 2544267Domain d4nhfe_: 4nhf E: [253957]
        automated match to d2bhma1
        complexed with ca
      6. 2544268Domain d4nhff_: 4nhf F: [253958]
        automated match to d2bhma1
        complexed with ca
  4. 2544270Bartonella quintana [TaxId:1134506] [256360] (1 PDB entry)
  5. 2544272Bartonella tribocorum [TaxId:382640] [256364] (1 PDB entry)
  6. 2544274Burkholderia xenovorans [TaxId:266265] [188714] (1 PDB entry)
  7. 2544277Chlamydomonas reinhardtii [TaxId:3055] [367874] (1 PDB entry)
  8. 2544287Cryptosporidium parvum [TaxId:5807] [187280] (1 PDB entry)
  9. 2544289Escherichia coli [TaxId:562] [323327] (5 PDB entries)
    1. Domains for 5i97:
      1. 2544290Domain d5i97a_: 5i97 A: [323387]
        automated match to d4nhfa_
      2. 2544291Domain d5i97b_: 5i97 B: [323328]
        automated match to d4nhfa_
      3. 2544292Domain d5i97c_: 5i97 C: [323429]
        automated match to d4nhfa_
      4. 2544293Domain d5i97d_: 5i97 D: [323373]
        automated match to d4nhfa_
    2. Domains for 5wic:
      1. 2544294Domain d5wica_: 5wic A: [341714]
        automated match to d4nhfa_
        complexed with foa
      2. 2544295Domain d5wicb_: 5wic B: [341759]
        automated match to d4nhfa_
        complexed with foa
      3. 2544296Domain d5wicc_: 5wic C: [341636]
        automated match to d4nhfa_
        complexed with foa
      4. 2544297Domain d5wicd_: 5wic D: [341762]
        automated match to d4nhfa_
        complexed with foa
    3. Domains for 5wii:
      1. 2544306Domain d5wiia_: 5wii A: [341653]
        automated match to d4nhfa_
        complexed with ao4
      2. 2544307Domain d5wiib_: 5wii B: [341723]
        automated match to d4nhfa_
        complexed with ao4
      3. 2544308Domain d5wiic_: 5wii C: [341649]
        automated match to d4nhfa_
        complexed with ao4
      4. 2544309Domain d5wiid_: 5wii D: [341647]
        automated match to d4nhfa_
        complexed with ao4
    4. Domains for 5wio:
      1. 2544298Domain d5wioa_: 5wio A: [341733]
        automated match to d4nhfa_
        complexed with xxe
      2. 2544299Domain d5wiob_: 5wio B: [341666]
        automated match to d4nhfa_
        complexed with xxe
      3. 2544300Domain d5wioc_: 5wio C: [341678]
        automated match to d4nhfa_
        complexed with xxe
      4. 2544301Domain d5wiod_: 5wio D: [341686]
        automated match to d4nhfa_
        complexed with xxe
    5. Domains for 5wip:
      1. 2544302Domain d5wipa_: 5wip A: [341726]
        automated match to d4nhfa_
        complexed with xxo
      2. 2544303Domain d5wipb_: 5wip B: [341737]
        automated match to d4nhfa_
        complexed with xxo
      3. 2544304Domain d5wipc_: 5wip C: [341724]
        automated match to d4nhfa_
        complexed with xxo
      4. 2544305Domain d5wipd_: 5wip D: [341716]
        automated match to d4nhfa_
        complexed with xxo
  10. 2544310Fruit fly (Drosophila melanogaster) [TaxId:7227] [195496] (3 PDB entries)
    1. Domains for 3ujm:
      1. 2544311Domain d3ujma1: 3ujm A:15-130 [200990]
        Other proteins in same PDB: d3ujma2, d3ujmb2
        automated match to d3ujmb_
        complexed with epe
      2. 2544312Domain d3ujmb1: 3ujm B:15-130 [195497]
        Other proteins in same PDB: d3ujma2, d3ujmb2
        automated match to d3q90b_
        complexed with epe
    2. Domains for 6ihj:
      1. 2544313Domain d6ihjb_: 6ihj B: [373020]
        automated match to d1jkga_
      2. 2544314Domain d6ihjd_: 6ihj D: [372914]
        automated match to d1jkga_
    3. Domains for 6mrk:
      1. 2544315Domain d6mrku_: 6mrk U: [370643]
        automated match to d1jkga_
        protein/RNA complex
      2. 2544316Domain d6mrkv_: 6mrk V: [370666]
        automated match to d1jkga_
        protein/RNA complex
  11. 2544317Human (Homo sapiens) [TaxId:9606] [189642] (4 PDB entries)
    1. Domains for 3q90:
      1. 2544318Domain d3q90a_: 3q90 A: [184278]
        Other proteins in same PDB: d3q90b2
        automated match to d1zo2a1
      2. 2544319Domain d3q90b1: 3q90 B:1-139 [184279]
        Other proteins in same PDB: d3q90b2
        automated match to d1zo2a1
    2. Domains for 4fcj:
      1. 2544320Domain d4fcja_: 4fcj A: [221143]
        Other proteins in same PDB: d4fcjb2
        automated match to d4fcma_
        complexed with gol
      2. 2544321Domain d4fcjb1: 4fcj B:1-138 [221144]
        Other proteins in same PDB: d4fcjb2
        automated match to d4fcma_
        complexed with gol
    3. Domains for 4fcm:
      1. 2544324Domain d4fcma_: 4fcm A: [197234]
        automated match to d3q90b_
        complexed with po4
      2. 2544325Domain d4fcmb_: 4fcm B: [202028]
        automated match to d4fcma_
        complexed with po4
    4. Domains for 5fw5:
      1. 2544322Domain d5fw5a1: 5fw5 A:1-139 [319850]
        Other proteins in same PDB: d5fw5a2
        automated match to d4fcja_
        complexed with act, gol, k, so4
      2. 2544323Domain d5fw5b_: 5fw5 B: [319749]
        Other proteins in same PDB: d5fw5a2
        automated match to d4fcja_
        complexed with act, gol, k, so4
  12. 2544326Methylobacillus flagellatus [TaxId:265072] [188697] (1 PDB entry)
  13. 2544333Mycobacterium hassiacum [TaxId:1122247] [386165] (2 PDB entries)
    1. Domains for 6p3l:
      1. 2544336Domain d6p3la_: 6p3l A: [386202]
        automated match to d5kp4b_
        complexed with gai, so4
      2. 2544337Domain d6p3lb_: 6p3l B: [386166]
        automated match to d5kp4b_
        complexed with gai, so4
    2. Domains for 6p44:
      1. 2544334Domain d6p44a_: 6p44 A: [386224]
        automated match to d3fzwb_
        complexed with dnx, gai, so4; mutant
      2. 2544335Domain d6p44b_: 6p44 B: [386223]
        automated match to d3fzwb_
        complexed with dnx, gai, so4; mutant
  14. 2544338Nematode (Caenorhabditis elegans) [TaxId:6239] [187281] (2 PDB entries)
    1. Domains for 2f86:
      1. 2544340Domain d2f86d_: 2f86 D: [146999]
        Other proteins in same PDB: d2f86b1
        automated match to d1hkxd_
      2. 2544341Domain d2f86f_: 2f86 F: [147000]
        Other proteins in same PDB: d2f86b1
        automated match to d1hkxd_
      3. 2544342Domain d2f86h_: 2f86 H: [147001]
        Other proteins in same PDB: d2f86b1
        automated match to d1hkxd_
      4. 2544343Domain d2f86j_: 2f86 J: [147002]
        Other proteins in same PDB: d2f86b1
        automated match to d1hkxd_
      5. 2544344Domain d2f86l_: 2f86 L: [147003]
        Other proteins in same PDB: d2f86b1
        automated match to d1hkxd_
      6. 2544345Domain d2f86n_: 2f86 N: [147004]
        Other proteins in same PDB: d2f86b1
        automated match to d1hkxd_
    2. Domain for 3nv0:
      • 2544339Domain d3nv0b_: 3nv0 B: [214058]
        automated match to d1jkga_
        protein/RNA complex; complexed with bme, edo, na, peg; mutant
  15. 2544346Nematostella vectensis [TaxId:45351] [314982] (1 PDB entry)
  16. 2544354Nostoc sp. [TaxId:103690] [326234] (1 PDB entry)
  17. 2544357Rhodococcus sp. [TaxId:92694] [186958] (1 PDB entry)
  18. 2544360Rhodospirillum rubrum [TaxId:269796] [188772] (1 PDB entry)
  19. 2544362Salpingoeca rosetta [TaxId:946362] [315168] (1 PDB entry)
  20. 2544364Sphingobium yanoikuyae [TaxId:13690] [187741] (2 PDB entries)
    1. Domains for 2gbw:
      1. 2544365Domain d2gbwb_: 2gbw B: [164658]
        Other proteins in same PDB: d2gbwa1, d2gbwa2, d2gbwc1, d2gbwc2, d2gbwe1, d2gbwe2
        automated match to d1ulid_
        complexed with fe, fes, oxy
      2. 2544366Domain d2gbwd_: 2gbw D: [164659]
        Other proteins in same PDB: d2gbwa1, d2gbwa2, d2gbwc1, d2gbwc2, d2gbwe1, d2gbwe2
        automated match to d1ulid_
        complexed with fe, fes, oxy
      3. 2544367Domain d2gbwf_: 2gbw F: [164660]
        Other proteins in same PDB: d2gbwa1, d2gbwa2, d2gbwc1, d2gbwc2, d2gbwe1, d2gbwe2
        automated match to d1ulid_
        complexed with fe, fes, oxy
    2. Domains for 2gbx:
      1. 2544368Domain d2gbxb_: 2gbx B: [164661]
        Other proteins in same PDB: d2gbxa1, d2gbxa2, d2gbxc1, d2gbxc2, d2gbxe1, d2gbxe2
        automated match to d1ulid_
        complexed with bnl, fe, fes, zn
      2. 2544369Domain d2gbxd_: 2gbx D: [164662]
        Other proteins in same PDB: d2gbxa1, d2gbxa2, d2gbxc1, d2gbxc2, d2gbxe1, d2gbxe2
        automated match to d1ulid_
        complexed with bnl, fe, fes, zn
      3. 2544370Domain d2gbxf_: 2gbx F: [164663]
        Other proteins in same PDB: d2gbxa1, d2gbxa2, d2gbxc1, d2gbxc2, d2gbxe1, d2gbxe2
        automated match to d1ulid_
        complexed with bnl, fe, fes, zn
  21. 2544371Sphingomonas sp. [TaxId:279135] [187555] (1 PDB entry)
  22. 2544375Staphylococcus aureus [TaxId:1280] [256158] (3 PDB entries)
    1. Domains for 3zg5:
      1. 2544376Domain d3zg5a1: 3zg5 A:27-138 [250785]
        Other proteins in same PDB: d3zg5a2, d3zg5a3, d3zg5b2, d3zg5b3
        automated match to d1vqqa1
        complexed with cd, cl
      2. 2544377Domain d3zg5b1: 3zg5 B:27-138 [250788]
        Other proteins in same PDB: d3zg5a2, d3zg5a3, d3zg5b2, d3zg5b3
        automated match to d1vqqa1
        complexed with cd, cl
    2. Domains for 4bl2:
      1. 2544378Domain d4bl2a1: 4bl2 A:26-138 [256551]
        Other proteins in same PDB: d4bl2a2, d4bl2a3, d4bl2b2, d4bl2b3
        automated match to d1vqqa1
        complexed with cd, cl; mutant
      2. 2544379Domain d4bl2b1: 4bl2 B:27-138 [256554]
        Other proteins in same PDB: d4bl2a2, d4bl2a3, d4bl2b2, d4bl2b3
        automated match to d1vqqa1
        complexed with cd, cl; mutant
    3. Domains for 4bl3:
      1. 2544380Domain d4bl3a1: 4bl3 A:26-138 [256557]
        Other proteins in same PDB: d4bl3a2, d4bl3a3, d4bl3b2, d4bl3b3
        automated match to d1vqqa1
        complexed with cd, cl, mur; mutant
      2. 2544381Domain d4bl3b1: 4bl3 B:26-138 [259319]
        Other proteins in same PDB: d4bl3a2, d4bl3a3, d4bl3b2, d4bl3b3
        automated match to d1vqqa1
        complexed with cd, cl, mur; mutant
  23. 2544382Staphylococcus aureus [TaxId:158878] [256155] (6 PDB entries)
    1. Domains for 3zfz:
      1. 2544385Domain d3zfza1: 3zfz A:27-138 [250773]
        Other proteins in same PDB: d3zfza2, d3zfza3, d3zfzb2, d3zfzb3
        automated match to d1vqqa1
        complexed with 1w8, ai8, cd, cl, mur
      2. 2544386Domain d3zfzb1: 3zfz B:27-138 [250776]
        Other proteins in same PDB: d3zfza2, d3zfza3, d3zfzb2, d3zfzb3
        automated match to d1vqqa1
        complexed with 1w8, ai8, cd, cl, mur
    2. Domains for 3zg0:
      1. 2544389Domain d3zg0a1: 3zg0 A:27-138 [250779]
        Other proteins in same PDB: d3zg0a2, d3zg0a3, d3zg0b2, d3zg0b3
        automated match to d1vqqa1
        complexed with 1w8, ai8, cd, cl, mur
      2. 2544390Domain d3zg0b1: 3zg0 B:27-138 [250782]
        Other proteins in same PDB: d3zg0a2, d3zg0a3, d3zg0b2, d3zg0b3
        automated match to d1vqqa1
        complexed with 1w8, ai8, cd, cl, mur
    3. Domains for 4cjn:
      1. 2544383Domain d4cjna1: 4cjn A:27-138 [269620]
        Other proteins in same PDB: d4cjna2, d4cjna3, d4cjnb2, d4cjnb3
        automated match to d1vqqa1
        complexed with cd, cl, mur, qnz
      2. 2544384Domain d4cjnb1: 4cjn B:27-138 [269619]
        Other proteins in same PDB: d4cjna2, d4cjna3, d4cjnb2, d4cjnb3
        automated match to d1vqqa1
        complexed with cd, cl, mur, qnz
    4. Domains for 4cpk:
      1. 2544387Domain d4cpka1: 4cpk A:27-138 [262606]
        Other proteins in same PDB: d4cpka2, d4cpka3, d4cpkb2, d4cpkb3
        automated match to d1vqqa1
        complexed with cd, cl, mur; mutant
      2. 2544388Domain d4cpkb1: 4cpk B:27-138 [259337]
        Other proteins in same PDB: d4cpka2, d4cpka3, d4cpkb2, d4cpkb3
        automated match to d1vqqa1
        complexed with cd, cl, mur; mutant
    5. Domains for 6h5o:
      1. 2544393Domain d6h5oa1: 6h5o A:27-138 [372861]
        Other proteins in same PDB: d6h5oa2, d6h5oa3, d6h5ob2, d6h5ob3
        automated match to d1vqqa1
        complexed with cd, jpp
      2. 2544394Domain d6h5ob1: 6h5o B:27-138 [372889]
        Other proteins in same PDB: d6h5oa2, d6h5oa3, d6h5ob2, d6h5ob3
        automated match to d1vqqa1
        complexed with cd, jpp
    6. Domains for 6q9n:
      1. 2544391Domain d6q9na1: 6q9n A:27-138 [377594]
        Other proteins in same PDB: d6q9na2, d6q9na3, d6q9nb2, d6q9nb3
        automated match to d1vqqa1
        complexed with cd, cl, jpp, mur, qln
      2. 2544392Domain d6q9nb1: 6q9n B:27-138 [377630]
        Other proteins in same PDB: d6q9na2, d6q9na3, d6q9nb2, d6q9nb3
        automated match to d1vqqa1
        complexed with cd, cl, jpp, mur, qln
  24. 2544395Streptomyces albus [TaxId:1888] [277508] (1 PDB entry)
  25. 2544398Streptomyces antibioticus [TaxId:1890] [376339] (1 PDB entry)
  26. 2544409Streptomyces cinnamonensis [TaxId:1900] [311349] (1 PDB entry)
  27. 2544412Streptomyces lasaliensis [TaxId:324833] [346353] (2 PDB entries)
    1. Domains for 3rga:
      1. 2544413Domain d3rgaa1: 3rga A:1-133 [344997]
        Other proteins in same PDB: d3rgaa3
        automated match to d3wmda_
        complexed with act, fmt, gol, ild, lsb, moh, na
      2. 2544414Domain d3rgaa2: 3rga A:134-280 [344998]
        Other proteins in same PDB: d3rgaa3
        automated match to d3wmda_
        complexed with act, fmt, gol, ild, lsb, moh, na
    2. Domains for 4rzm:
      1. 2544415Domain d4rzma1: 4rzm A:1-133 [345439]
        Other proteins in same PDB: d4rzma3, d4rzmb3
        automated match to d3wmda_
        complexed with cl, fmt, gol, lsd, na
      2. 2544416Domain d4rzma2: 4rzm A:134-280 [345440]
        Other proteins in same PDB: d4rzma3, d4rzmb3
        automated match to d3wmda_
        complexed with cl, fmt, gol, lsd, na
      3. 2544417Domain d4rzmb1: 4rzm B:1-133 [345442]
        Other proteins in same PDB: d4rzma3, d4rzmb3
        automated match to d3wmda_
        complexed with cl, fmt, gol, lsd, na
      4. 2544418Domain d4rzmb2: 4rzm B:134-280 [345443]
        Other proteins in same PDB: d4rzma3, d4rzmb3
        automated match to d3wmda_
        complexed with cl, fmt, gol, lsd, na
  28. 2544419Streptomyces laurentii [TaxId:39478] [348357] (1 PDB entry)
  29. 2544422Streptomyces xiamenensis [TaxId:1093097] [377042] (2 PDB entries)
    1. Domains for 6isk:
      1. 2544425Domain d6iska_: 6isk A: [377060]
        automated match to d3er7b_
        complexed with edo, mla
      2. 2544426Domain d6iskb_: 6isk B: [377043]
        automated match to d3er7b_
        complexed with edo, mla
    2. Domains for 6isl:
      1. 2544423Domain d6isla_: 6isl A: [377053]
        automated match to d3er7b_
        complexed with xia
      2. 2544424Domain d6islb_: 6isl B: [377048]
        automated match to d3er7b_
        complexed with xia
  30. 2544427Synechocystis sp. [TaxId:1111708] [275032] (5 PDB entries)
    1. Domain for 4xb5:
    2. Domains for 5tuw:
      1. 2544432Domain d5tuwa2: 5tuw A:174-311 [335295]
        Other proteins in same PDB: d5tuwa1, d5tuwb1, d5tuwc1, d5tuwd1, d5tuwe1, d5tuwf1
        automated match to d1m98a2
        complexed with eq3, gol
      2. 2544433Domain d5tuwb2: 5tuw B:174-311 [335184]
        Other proteins in same PDB: d5tuwa1, d5tuwb1, d5tuwc1, d5tuwd1, d5tuwe1, d5tuwf1
        automated match to d1m98a2
        complexed with eq3, gol
      3. 2544434Domain d5tuwc2: 5tuw C:174-311 [335174]
        Other proteins in same PDB: d5tuwa1, d5tuwb1, d5tuwc1, d5tuwd1, d5tuwe1, d5tuwf1
        automated match to d1m98a2
        complexed with eq3, gol
      4. 2544435Domain d5tuwd2: 5tuw D:174-311 [335191]
        Other proteins in same PDB: d5tuwa1, d5tuwb1, d5tuwc1, d5tuwd1, d5tuwe1, d5tuwf1
        automated match to d1m98a2
        complexed with eq3, gol
      5. 2544436Domain d5tuwe2: 5tuw E:174-311 [335280]
        Other proteins in same PDB: d5tuwa1, d5tuwb1, d5tuwc1, d5tuwd1, d5tuwe1, d5tuwf1
        automated match to d1m98a2
        complexed with eq3, gol
      6. 2544437Domain d5tuwf2: 5tuw F:174-311 [335182]
        Other proteins in same PDB: d5tuwa1, d5tuwb1, d5tuwc1, d5tuwd1, d5tuwe1, d5tuwf1
        automated match to d1m98a2
        complexed with eq3, gol
    3. Domain for 5tux:
    4. Domain for 5tv0:
    5. Domain for 6t6k:
  31. 2544438Synechocystis sp. [TaxId:1148] [225878] (8 PDB entries)
    1. Domains for 3i1v:
      1. 2544441Domain d3i1va2: 3i1v A:174-311 [305540]
        Other proteins in same PDB: d3i1va1, d3i1vb1
        automated match to d1m98a2
        complexed with gol, raw
      2. 2544442Domain d3i1vb2: 3i1v B:174-312 [305542]
        Other proteins in same PDB: d3i1va1, d3i1vb1
        automated match to d1m98a2
        complexed with gol, raw
    2. Domains for 3i1w:
      1. 2544449Domain d3i1wa2: 3i1w A:174-312 [305544]
        Other proteins in same PDB: d3i1wa1, d3i1wb1
        automated match to d1m98a2
        complexed with raw; mutant
      2. 2544450Domain d3i1wb2: 3i1w B:174-312 [305546]
        Other proteins in same PDB: d3i1wa1, d3i1wb1
        automated match to d1m98a2
        complexed with raw; mutant
    3. Domains for 3i1x:
      1. 2544443Domain d3i1xa2: 3i1x A:174-312 [305548]
        Other proteins in same PDB: d3i1xa1, d3i1xb1
        automated match to d1m98a2
        complexed with gol, raw; mutant
      2. 2544444Domain d3i1xb2: 3i1x B:174-311 [305550]
        Other proteins in same PDB: d3i1xa1, d3i1xb1
        automated match to d1m98a2
        complexed with gol, raw; mutant
    4. Domains for 3mg1:
      1. 2544445Domain d3mg1a2: 3mg1 A:174-311 [213238]
        Other proteins in same PDB: d3mg1a1, d3mg1b1
        automated match to d1m98a2
        complexed with ech, gol
      2. 2544446Domain d3mg1b2: 3mg1 B:174-312 [213240]
        Other proteins in same PDB: d3mg1a1, d3mg1b1
        automated match to d1m98a2
        complexed with ech, gol
    5. Domains for 3mg2:
      1. 2544451Domain d3mg2a2: 3mg2 A:174-312 [213242]
        Other proteins in same PDB: d3mg2a1, d3mg2b1
        automated match to d1m98a2
        complexed with ech; mutant
      2. 2544452Domain d3mg2b2: 3mg2 B:174-312 [213244]
        Other proteins in same PDB: d3mg2a1, d3mg2b1
        automated match to d1m98a2
        complexed with ech; mutant
    6. Domains for 3mg3:
      1. 2544447Domain d3mg3a2: 3mg3 A:174-312 [213246]
        Other proteins in same PDB: d3mg3a1, d3mg3b1
        automated match to d1m98a2
        complexed with ech, gol; mutant
      2. 2544448Domain d3mg3b2: 3mg3 B:174-311 [213248]
        Other proteins in same PDB: d3mg3a1, d3mg3b1
        automated match to d1m98a2
        complexed with ech, gol; mutant
    7. Domain for 6t6m:
    8. Domain for 6t6o:
  32. 2544453Tolypothrix sp. [TaxId:1188] [385922] (1 PDB entry)
  33. 2544455Xanthomonas campestris [TaxId:340] [225616] (1 PDB entry)

More info for Protein automated matches from d.17.4.0: automated matches

Timeline for Protein automated matches from d.17.4.0: automated matches: