Lineage for Protein: automated matches

  1. Root: SCOPe 2.08
  2. 2739516Class b: All beta proteins [48724] (180 folds)
  3. 2777171Fold b.22: TNF-like [49841] (1 superfamily)
    sandwich, 10 strands in 2 sheets; jelly-roll
  4. 2777172Superfamily b.22.1: TNF-like [49842] (2 families) (S)
  5. 2777173Family b.22.1.1: TNF-like [49843] (15 proteins)
  6. 2777555Protein automated matches [190204] (3 species)
    not a true protein

Species:

  1. 2777556Human (Homo sapiens) [TaxId:9606] [186956] (13 PDB entries)
    1. Domain for 1d2q:
    2. Domains for 2e7a:
      1. 2777562Domain d2e7aa_: 2e7a A: [163888]
        automated match to d1a8ma_
        mutant
      2. 2777563Domain d2e7ab_: 2e7a B: [163889]
        automated match to d1a8ma_
        mutant
      3. 2777564Domain d2e7ac_: 2e7a C: [163890]
        automated match to d1a8ma_
        mutant
    3. Domains for 2wnu:
      1. 2777569Domain d2wnub_: 2wnu B: [169486]
        Other proteins in same PDB: d2wnua_, d2wnuc_, d2wnud_, d2wnuf_
        automated match to d1pk6b_
        complexed with nag
      2. 2777570Domain d2wnue_: 2wnu E: [169488]
        Other proteins in same PDB: d2wnua_, d2wnuc_, d2wnud_, d2wnuf_
        automated match to d1pk6b_
        complexed with nag
    4. Domains for 2wnv:
      1. 2777560Domain d2wnvb_: 2wnv B: [169490]
        Other proteins in same PDB: d2wnva_, d2wnvc_, d2wnvd_, d2wnvf_
        automated match to d1pk6b_
        complexed with 2dr, ca, nag
      2. 2777561Domain d2wnve_: 2wnv E: [169492]
        Other proteins in same PDB: d2wnva_, d2wnvc_, d2wnvd_, d2wnvf_
        automated match to d1pk6b_
        complexed with 2dr, ca, nag
    5. Domains for 3it8:
      1. 2777575Domain d3it8a_: 3it8 A: [178607]
        automated match to d1tnfa_
        complexed with nag
      2. 2777576Domain d3it8b_: 3it8 B: [178608]
        automated match to d1tnfa_
        complexed with nag
      3. 2777577Domain d3it8c_: 3it8 C: [178609]
        automated match to d1tnfa_
        complexed with nag
      4. 2777578Domain d3it8g_: 3it8 G: [178610]
        automated match to d1tnfa_
        complexed with nag
      5. 2777579Domain d3it8h_: 3it8 H: [178611]
        automated match to d1tnfa_
        complexed with nag
      6. 2777580Domain d3it8i_: 3it8 I: [178612]
        automated match to d1tnfa_
        complexed with nag
    6. Domains for 3lkj:
      1. 2777572Domain d3lkja_: 3lkj A: [180346]
        automated match to d1alya_
        complexed with lkj, nag
      2. 2777573Domain d3lkjb_: 3lkj B: [180347]
        automated match to d1alya_
        complexed with lkj, nag
      3. 2777574Domain d3lkjc_: 3lkj C: [180348]
        automated match to d1alya_
        complexed with lkj, nag
    7. Domain for 3urf:
    8. Domain for 5bnq:
    9. Domains for 5cir:
      1. 2777587Domain d5cira_: 5cir A: [328504]
        automated match to d1d4vb_
        complexed with cl, zn
      2. 2777588Domain d5cirb_: 5cir B: [328444]
        automated match to d1d4vb_
        complexed with cl, zn
      3. 2777589Domain d5cird_: 5cir D: [328550]
        automated match to d1d4vb_
        complexed with cl, zn
    10. Domains for 5wux:
      1. 2777584Domain d5wuxe_: 5wux E: [335240]
        Other proteins in same PDB: d5wuxa_, d5wuxb1, d5wuxb2, d5wuxc_, d5wuxd1, d5wuxd2, d5wuxh_, d5wuxl1, d5wuxl2
        automated match to d1a8ma_
      2. 2777585Domain d5wuxf_: 5wux F: [335227]
        Other proteins in same PDB: d5wuxa_, d5wuxb1, d5wuxb2, d5wuxc_, d5wuxd1, d5wuxd2, d5wuxh_, d5wuxl1, d5wuxl2
        automated match to d1a8ma_
      3. 2777586Domain d5wuxg_: 5wux G: [335260]
        Other proteins in same PDB: d5wuxa_, d5wuxb1, d5wuxb2, d5wuxc_, d5wuxd1, d5wuxd2, d5wuxh_, d5wuxl1, d5wuxl2
        automated match to d1a8ma_
    11. Domains for 6u66:
      1. 2777557Domain d6u66a_: 6u66 A: [379387]
        Other proteins in same PDB: d6u66b2
        automated match to d1c3ha_
        complexed with ca, na
      2. 2777558Domain d6u66b1: 6u66 B:107-244 [379363]
        Other proteins in same PDB: d6u66b2
        automated match to d1c3ha_
        complexed with ca, na
      3. 2777559Domain d6u66c_: 6u66 C: [379380]
        Other proteins in same PDB: d6u66b2
        automated match to d1c3ha_
        complexed with ca, na
    12. Domain for 6u6n:
    13. Domains for 6z6v:
      1. 2777565Domain d6z6vb_: 6z6v B: [387669]
        Other proteins in same PDB: d6z6va_, d6z6vd_, d6z6vg1, d6z6vg2, d6z6vh1, d6z6vh2
        automated match to d2wnvb_
        complexed with nag
      2. 2777566Domain d6z6vc_: 6z6v C: [387673]
        Other proteins in same PDB: d6z6va_, d6z6vd_, d6z6vg1, d6z6vg2, d6z6vh1, d6z6vh2
        automated match to d2wnvc_
        complexed with nag
      3. 2777567Domain d6z6ve_: 6z6v E: [387651]
        Other proteins in same PDB: d6z6va_, d6z6vd_, d6z6vg1, d6z6vg2, d6z6vh1, d6z6vh2
        automated match to d2wnvb_
        complexed with nag
      4. 2777568Domain d6z6vf_: 6z6v F: [387663]
        Other proteins in same PDB: d6z6va_, d6z6vd_, d6z6vg1, d6z6vg2, d6z6vh1, d6z6vh2
        automated match to d2wnvc_
        complexed with nag
  2. 2777590Mouse (Mus musculus) [TaxId:10090] [189134] (3 PDB entries)
    1. Domains for 3k48:
      1. 2777593Domain d3k48a_: 3k48 A: [179059]
        automated match to d1u5xa_
      2. 2777594Domain d3k48b_: 3k48 B: [179060]
        automated match to d1u5xa_
      3. 2777595Domain d3k48d_: 3k48 D: [179061]
        automated match to d1u5xa_
    2. Domain for 3me2:
    3. Domain for 4giq:
  3. 2777596Rabbit (Oryctolagus cuniculus) [TaxId:9986] [195809] (1 PDB entry)

More info for Protein automated matches from b.22.1.1: TNF-like

Timeline for Protein automated matches from b.22.1.1: TNF-like: