Lineage for Protein: automated matches

  1. Root: SCOPe 2.06
  2. 2017114Class b: All beta proteins [48724] (177 folds)
  3. 2041369Fold b.22: TNF-like [49841] (1 superfamily)
    sandwich, 10 strands in 2 sheets; jelly-roll
  4. 2041370Superfamily b.22.1: TNF-like [49842] (2 families) (S)
  5. 2041371Family b.22.1.1: TNF-like [49843] (15 protein domains)
  6. 2041626Protein automated matches [190204] (3 species)
    not a true protein

Species:

  1. 2041627Human (Homo sapiens) [TaxId:9606] [186956] (11 PDB entries)
    1. Domain for 1d2q:
    2. Domains for 2e7a:
      1. 2041630Domain d2e7aa_: 2e7a A: [163888]
        automated match to d1a8ma_
        mutant
      2. 2041631Domain d2e7ab_: 2e7a B: [163889]
        automated match to d1a8ma_
        mutant
      3. 2041632Domain d2e7ac_: 2e7a C: [163890]
        automated match to d1a8ma_
        mutant
    3. Domains for 2wnu:
      1. 2041633Domain d2wnub_: 2wnu B: [169486]
        Other proteins in same PDB: d2wnua_, d2wnuc_, d2wnud_, d2wnuf_
        automated match to d1pk6b_
        complexed with nag
      2. 2041634Domain d2wnue_: 2wnu E: [169488]
        Other proteins in same PDB: d2wnua_, d2wnuc_, d2wnud_, d2wnuf_
        automated match to d1pk6b_
        complexed with nag
    4. Domains for 2wnv:
      1. 2041628Domain d2wnvb_: 2wnv B: [169490]
        Other proteins in same PDB: d2wnva_, d2wnvc_, d2wnvd_, d2wnvf_
        automated match to d1pk6b_
        complexed with 2dr, ca, nag
      2. 2041629Domain d2wnve_: 2wnv E: [169492]
        Other proteins in same PDB: d2wnva_, d2wnvc_, d2wnvd_, d2wnvf_
        automated match to d1pk6b_
        complexed with 2dr, ca, nag
    5. Domains for 3it8:
      1. 2041647Domain d3it8a_: 3it8 A: [178607]
        automated match to d1tnfa_
        complexed with nag
      2. 2041648Domain d3it8b_: 3it8 B: [178608]
        automated match to d1tnfa_
        complexed with nag
      3. 2041649Domain d3it8c_: 3it8 C: [178609]
        automated match to d1tnfa_
        complexed with nag
      4. 2041650Domain d3it8g_: 3it8 G: [178610]
        automated match to d1tnfa_
        complexed with nag
      5. 2041651Domain d3it8h_: 3it8 H: [178611]
        automated match to d1tnfa_
        complexed with nag
      6. 2041652Domain d3it8i_: 3it8 I: [178612]
        automated match to d1tnfa_
        complexed with nag
    6. Domains for 3lkj:
      1. 2041641Domain d3lkja_: 3lkj A: [180346]
        automated match to d1alya_
        complexed with lkj, nag
      2. 2041642Domain d3lkjb_: 3lkj B: [180347]
        automated match to d1alya_
        complexed with lkj, nag
      3. 2041643Domain d3lkjc_: 3lkj C: [180348]
        automated match to d1alya_
        complexed with lkj, nag
    7. Domain for 3urf:
    8. Domains for 3v56:
      1. 2041635Domain d3v56a_: 3v56 A: [250313]
        automated match to d1kxga_
        complexed with so4
      2. 2041636Domain d3v56b_: 3v56 B: [250314]
        automated match to d1kxga_
        complexed with so4
      3. 2041637Domain d3v56c_: 3v56 C: [250315]
        automated match to d1kxga_
        complexed with so4
      4. 2041638Domain d3v56d_: 3v56 D: [250316]
        automated match to d1kxga_
        complexed with so4
      5. 2041639Domain d3v56e_: 3v56 E: [250317]
        automated match to d1kxga_
        complexed with so4
      6. 2041640Domain d3v56f_: 3v56 F: [250318]
        automated match to d1kxga_
        complexed with so4
    9. Domain for 5bnq:
    10. Domains for 5cir:
      1. 2285143Domain d5cirb_: 5cir B: [328444]
        automated match to d1d4vb_
        complexed with cl, zn
      2. 2285203Domain d5cira_: 5cir A: [328504]
        automated match to d1d4vb_
        complexed with cl, zn
      3. 2285249Domain d5cird_: 5cir D: [328550]
        automated match to d1d4vb_
        complexed with cl, zn
    11. Domains for 5wux:
      1. 2291926Domain d5wuxf_: 5wux F: [335227]
        automated match to d1a8ma_
      2. 2291939Domain d5wuxe_: 5wux E: [335240]
        automated match to d1a8ma_
      3. 2291959Domain d5wuxg_: 5wux G: [335260]
        automated match to d1a8ma_
  2. 2041653Mouse (Mus musculus) [TaxId:10090] [189134] (3 PDB entries)
    1. Domains for 3k48:
      1. 2041656Domain d3k48a_: 3k48 A: [179059]
        automated match to d1u5xa_
      2. 2041657Domain d3k48b_: 3k48 B: [179060]
        automated match to d1u5xa_
      3. 2041658Domain d3k48d_: 3k48 D: [179061]
        automated match to d1u5xa_
    2. Domain for 3me2:
    3. Domain for 4giq:
  3. 2041659Rabbit (Oryctolagus cuniculus) [TaxId:9986] [195809] (1 PDB entry)

More info for Protein automated matches from b.22.1.1: TNF-like

Timeline for Protein automated matches from b.22.1.1: TNF-like: