Lineage for Protein: automated matches

  1. Root: SCOPe 2.05
  2. 1815291Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
  3. 1878032Fold c.92: Chelatase-like [53799] (3 superfamilies)
    duplication: tandem repeat of two domains; 3 layers (a/b/a); parallel beta-sheet of 4 strands, order 2134
  4. 1878139Superfamily c.92.2: "Helical backbone" metal receptor [53807] (5 families) (S)
    contains a long alpha helical insertion in the interdomain linker
  5. 1878197Family c.92.2.3: Nitrogenase iron-molybdenum protein [53816] (3 proteins)
    contains three domains of this fold; "Helical backbone" holds domains 2 and 3
    both chains are homologous; the inter-chain arrangement of domains 1 is similar to the intra-chain arrangement of domains 2 and 3
    automatically mapped to Pfam PF00148
  6. 1878308Protein automated matches [190199] (2 species)
    not a true protein

Species:

  1. 1878309Azotobacter vinelandii [TaxId:354] [186943] (13 PDB entries)
    1. Domains for 2afh:
      1. 1878326Domain d2afha_: 2afh A: [126679]
        Other proteins in same PDB: d2afhb_, d2afhd_, d2afhe_, d2afhf_
        automated match to d1h1la_
        complexed with 1pe, ca, cfn, clf, hca, na, p6g, peg, pg4, pge, sf4, trs
      2. 1878327Domain d2afhc_: 2afh C: [126681]
        Other proteins in same PDB: d2afhb_, d2afhd_, d2afhe_, d2afhf_
        automated match to d1h1la_
        complexed with 1pe, ca, cfn, clf, hca, na, p6g, peg, pg4, pge, sf4, trs
    2. Domains for 2afi:
      1. 1878352Domain d2afia_: 2afi A: [126685]
        Other proteins in same PDB: d2afie_, d2afif_, d2afig_, d2afih_, d2afim_, d2afin_, d2afio_, d2afip_
        automated match to d1m34a_
        complexed with adp, ca, cfn, clf, hca, mg, sf4
      2. 1878353Domain d2afib_: 2afi B: [126686]
        Other proteins in same PDB: d2afie_, d2afif_, d2afig_, d2afih_, d2afim_, d2afin_, d2afio_, d2afip_
        automated match to d1qh8b_
        complexed with adp, ca, cfn, clf, hca, mg, sf4
      3. 1878354Domain d2afic_: 2afi C: [126687]
        Other proteins in same PDB: d2afie_, d2afif_, d2afig_, d2afih_, d2afim_, d2afin_, d2afio_, d2afip_
        automated match to d1m34a_
        complexed with adp, ca, cfn, clf, hca, mg, sf4
      4. 1878355Domain d2afid_: 2afi D: [126688]
        Other proteins in same PDB: d2afie_, d2afif_, d2afig_, d2afih_, d2afim_, d2afin_, d2afio_, d2afip_
        automated match to d1qh8b_
        complexed with adp, ca, cfn, clf, hca, mg, sf4
      5. 1878356Domain d2afii_: 2afi I: [126689]
        Other proteins in same PDB: d2afie_, d2afif_, d2afig_, d2afih_, d2afim_, d2afin_, d2afio_, d2afip_
        automated match to d1m34a_
        complexed with adp, ca, cfn, clf, hca, mg, sf4
      6. 1878357Domain d2afij_: 2afi J: [126690]
        Other proteins in same PDB: d2afie_, d2afif_, d2afig_, d2afih_, d2afim_, d2afin_, d2afio_, d2afip_
        automated match to d1qh8b_
        complexed with adp, ca, cfn, clf, hca, mg, sf4
      7. 1878358Domain d2afik_: 2afi K: [126691]
        Other proteins in same PDB: d2afie_, d2afif_, d2afig_, d2afih_, d2afim_, d2afin_, d2afio_, d2afip_
        automated match to d1m34a_
        complexed with adp, ca, cfn, clf, hca, mg, sf4
      8. 1878359Domain d2afil_: 2afi L: [126692]
        Other proteins in same PDB: d2afie_, d2afif_, d2afig_, d2afih_, d2afim_, d2afin_, d2afio_, d2afip_
        automated match to d1qh8b_
        complexed with adp, ca, cfn, clf, hca, mg, sf4
    3. Domains for 2afk:
      1. 1878348Domain d2afka_: 2afk A: [126694]
        Other proteins in same PDB: d2afkb_, d2afkd_, d2afke_, d2afkf_, d2afkg_, d2afkh_
        automated match to d1h1la_
        complexed with acp, ca, cfn, clf, hca, mg, sf4
      2. 1878349Domain d2afkc_: 2afk C: [126696]
        Other proteins in same PDB: d2afkb_, d2afkd_, d2afke_, d2afkf_, d2afkg_, d2afkh_
        automated match to d1h1la_
        complexed with acp, ca, cfn, clf, hca, mg, sf4
    4. Domains for 3k1a:
      1. 1878346Domain d3k1aa_: 3k1a A: [178943]
        Other proteins in same PDB: d3k1ab_, d3k1ad_
        automated match to d1h1la_
        complexed with ca, cfn, clf, hca
      2. 1878347Domain d3k1ac_: 3k1a C: [178945]
        Other proteins in same PDB: d3k1ab_, d3k1ad_
        automated match to d1h1la_
        complexed with ca, cfn, clf, hca
    5. Domains for 3u7q:
      1. 1878310Domain d3u7qa_: 3u7q A: [186099]
        Other proteins in same PDB: d3u7qb_, d3u7qd_
        automated match to d1h1la_
        complexed with 1cl, ca, clf, hca, ics, imd, mg
      2. 1878311Domain d3u7qc_: 3u7q C: [186101]
        Other proteins in same PDB: d3u7qb_, d3u7qd_
        automated match to d1h1la_
        complexed with 1cl, ca, clf, hca, ics, imd, mg
    6. Domains for 4nd8:
      1. 1878328Domain d4nd8a_: 4nd8 A: [236074]
        Other proteins in same PDB: d4nd8b_, d4nd8d_
        automated match to d1m34a_
        complexed with 1cl, fe, hca, ics
      2. 1878329Domain d4nd8c_: 4nd8 C: [236615]
        Other proteins in same PDB: d4nd8b_, d4nd8d_
        automated match to d4nd8a_
        complexed with 1cl, fe, hca, ics
    7. Domains for 4tku:
      1. 1878312Domain d4tkua_: 4tku A: [260022]
        Other proteins in same PDB: d4tkub_, d4tkud_
        automated match to d1m34a_
        complexed with cl, clf, fe2, hca, ics, imd
      2. 1878313Domain d4tkuc_: 4tku C: [260439]
        Other proteins in same PDB: d4tkub_, d4tkud_
        automated match to d1m34a_
        complexed with cl, clf, fe2, hca, ics, imd
    8. Domains for 4tkv:
      1. 1878314Domain d4tkva_: 4tkv A: [263899]
        Other proteins in same PDB: d4tkvb_, d4tkvd_
        automated match to d1m34a_
        complexed with clf, cmo, fe2, hca, ice, imd
      2. 1878315Domain d4tkvc_: 4tkv C: [263900]
        Other proteins in same PDB: d4tkvb_, d4tkvd_
        automated match to d1m34a_
        complexed with clf, cmo, fe2, hca, ice, imd
    9. Domains for 4wza:
      1. 1878320Domain d4wzaa_: 4wza A: [269126]
        Other proteins in same PDB: d4wzab_, d4wzad_, d4wzae_, d4wzaf_, d4wzag_, d4wzah_
        automated match to d4tkua_
        complexed with acp, adp, clf, fe, hca, ics, mg, sf4
      2. 1878321Domain d4wzac_: 4wza C: [269134]
        Other proteins in same PDB: d4wzab_, d4wzad_, d4wzae_, d4wzaf_, d4wzag_, d4wzah_
        automated match to d4tkua_
        complexed with acp, adp, clf, fe, hca, ics, mg, sf4
    10. Domains for 4wzb:
      1. 1878350Domain d4wzba_: 4wzb A: [269534]
        Other proteins in same PDB: d4wzbb_, d4wzbd_, d4wzbe_, d4wzbf_, d4wzbg_, d4wzbh_
        automated match to d4tkua_
        complexed with acp, clf, fe2, hca, ics, mg, sf4
      2. 1878351Domain d4wzbc_: 4wzb C: [269532]
        Other proteins in same PDB: d4wzbb_, d4wzbd_, d4wzbe_, d4wzbf_, d4wzbg_, d4wzbh_
        automated match to d4tkua_
        complexed with acp, clf, fe2, hca, ics, mg, sf4
    11. Domains for 5bvg:
      1. 1878322Domain d5bvga_: 5bvg A: [280113]
        automated match to d1m34a_
        complexed with cl, clf, fe2, hca, icg, imd, se
      2. 1878323Domain d5bvgb_: 5bvg B: [280117]
        automated match to d1qh8b_
        complexed with cl, clf, fe2, hca, icg, imd, se
      3. 1878324Domain d5bvgc_: 5bvg C: [280111]
        automated match to d1m34a_
        complexed with cl, clf, fe2, hca, icg, imd, se
      4. 1878325Domain d5bvgd_: 5bvg D: [280110]
        automated match to d1qh8b_
        complexed with cl, clf, fe2, hca, icg, imd, se
    12. Domains for 5bvh:
      1. 1878316Domain d5bvha_: 5bvh A: [280112]
        automated match to d1m34a_
        complexed with cl, clf, cmo, fe2, hca, ich, ics, imd
      2. 1878317Domain d5bvhb_: 5bvh B: [280116]
        automated match to d1qh8b_
        complexed with cl, clf, cmo, fe2, hca, ich, ics, imd
      3. 1878318Domain d5bvhc_: 5bvh C: [280118]
        automated match to d1m34a_
        complexed with cl, clf, cmo, fe2, hca, ich, ics, imd
      4. 1878319Domain d5bvhd_: 5bvh D: [280115]
        automated match to d1qh8b_
        complexed with cl, clf, cmo, fe2, hca, ich, ics, imd
    13. Domains for 5cx1:
      1. 1878330Domain d5cx1a_: 5cx1 A: [277128]
        automated match to d1qh8a_
        complexed with ca, clf, hca, ics; mutant
      2. 1878331Domain d5cx1b_: 5cx1 B: [277124]
        automated match to d1qh8b_
        complexed with ca, clf, hca, ics; mutant
      3. 1878332Domain d5cx1c_: 5cx1 C: [277127]
        automated match to d1qh8a_
        complexed with ca, clf, hca, ics; mutant
      4. 1878333Domain d5cx1d_: 5cx1 D: [277122]
        automated match to d1qh8b_
        complexed with ca, clf, hca, ics; mutant
      5. 1878334Domain d5cx1e_: 5cx1 E: [277126]
        automated match to d1qh8a_
        complexed with ca, clf, hca, ics; mutant
      6. 1878335Domain d5cx1f_: 5cx1 F: [277120]
        automated match to d1qh8b_
        complexed with ca, clf, hca, ics; mutant
      7. 1878336Domain d5cx1g_: 5cx1 G: [277117]
        automated match to d1qh8a_
        complexed with ca, clf, hca, ics; mutant
      8. 1878337Domain d5cx1h_: 5cx1 H: [277121]
        automated match to d1qh8b_
        complexed with ca, clf, hca, ics; mutant
      9. 1878338Domain d5cx1i_: 5cx1 I: [277116]
        automated match to d1qh8a_
        complexed with ca, clf, hca, ics; mutant
      10. 1878339Domain d5cx1j_: 5cx1 J: [277129]
        automated match to d1qh8b_
        complexed with ca, clf, hca, ics; mutant
      11. 1878340Domain d5cx1k_: 5cx1 K: [277119]
        automated match to d1qh8a_
        complexed with ca, clf, hca, ics; mutant
      12. 1878341Domain d5cx1l_: 5cx1 L: [277115]
        automated match to d1qh8b_
        complexed with ca, clf, hca, ics; mutant
      13. 1878342Domain d5cx1m_: 5cx1 M: [277125]
        automated match to d1qh8a_
        complexed with ca, clf, hca, ics; mutant
      14. 1878343Domain d5cx1n_: 5cx1 N: [277123]
        automated match to d1qh8b_
        complexed with ca, clf, hca, ics; mutant
      15. 1878344Domain d5cx1o_: 5cx1 O: [277130]
        automated match to d1qh8a_
        complexed with ca, clf, hca, ics; mutant
      16. 1878345Domain d5cx1p_: 5cx1 P: [277118]
        automated match to d1qh8b_
        complexed with ca, clf, hca, ics; mutant
  2. 1878360Clostridium pasteurianum [TaxId:1262449] [269442] (1 PDB entry)

More info for Protein automated matches from c.92.2.3: Nitrogenase iron-molybdenum protein

Timeline for Protein automated matches from c.92.2.3: Nitrogenase iron-molybdenum protein: