Lineage for Protein: automated matches

  1. Root: SCOPe 2.04
  2. 1510239Class b: All beta proteins [48724] (176 folds)
  3. 1552675Fold b.61: Streptavidin-like [50875] (8 superfamilies)
    barrel, closed; n=8, S=10; meander
  4. 1552676Superfamily b.61.1: Avidin/streptavidin [50876] (2 families) (S)
  5. 1552677Family b.61.1.1: Avidin/streptavidin [50877] (3 proteins)
  6. 1552986Protein automated matches [190191] (2 species)
    not a true protein

Species:

  1. 1552987Chicken (Gallus gallus) [TaxId:9031] [186931] (24 PDB entries)
    1. Domains for 1vyo:
      1. 1553010Domain d1vyoa_: 1vyo A: [161871]
        automated match to d1rava_
        complexed with gol
      2. 1553011Domain d1vyob_: 1vyo B: [161872]
        automated match to d1rava_
        complexed with gol
    2. Domains for 1wbi:
      1. 1553000Domain d1wbia_: 1wbi A: [161939]
        automated match to d1rava_
        complexed with btn, gol, so4
      2. 1553001Domain d1wbib_: 1wbi B: [161940]
        automated match to d1rava_
        complexed with btn, gol, so4
      3. 1553002Domain d1wbic_: 1wbi C: [161941]
        automated match to d1rava_
        complexed with btn, gol, so4
      4. 1553003Domain d1wbid_: 1wbi D: [161942]
        automated match to d1rava_
        complexed with btn, gol, so4
      5. 1553004Domain d1wbie_: 1wbi E: [161943]
        automated match to d1rava_
        complexed with btn, gol, so4
      6. 1553005Domain d1wbif_: 1wbi F: [161944]
        automated match to d1rava_
        complexed with btn, gol, so4
      7. 1553006Domain d1wbig_: 1wbi G: [161945]
        automated match to d1rava_
        complexed with btn, gol, so4
      8. 1553007Domain d1wbih_: 1wbi H: [161946]
        automated match to d1rava_
        complexed with btn, gol, so4
    3. Domains for 1y52:
      1. 1553022Domain d1y52x_: 1y52 X: [162149]
        automated match to d1rava_
        complexed with btn, nag
      2. 1553023Domain d1y52y_: 1y52 Y: [162150]
        automated match to d1rava_
        complexed with btn, nag
    4. Domains for 1y53:
      1. 1552996Domain d1y53x_: 1y53 X: [162151]
        automated match to d1rava_
        complexed with fmt
      2. 1552997Domain d1y53y_: 1y53 Y: [162152]
        automated match to d1rava_
        complexed with fmt
    5. Domains for 1y55:
      1. 1552988Domain d1y55x_: 1y55 X: [162154]
        automated match to d1rava_
        complexed with btn, fmt; mutant
      2. 1552989Domain d1y55y_: 1y55 Y: [162155]
        automated match to d1rava_
        complexed with btn, fmt; mutant
    6. Domains for 2a5b:
      1. 1553043Domain d2a5ba_: 2a5b A: [126168]
        automated match to d1avdb_
        protein/DNA complex; complexed with 8hg, nag
      2. 1553044Domain d2a5bb_: 2a5b B: [126169]
        automated match to d1avdb_
        protein/DNA complex; complexed with 8hg, nag
    7. Domains for 2a5c:
      1. 1553045Domain d2a5ca_: 2a5c A: [126170]
        automated match to d1ij8b_
        protein/DNA complex; complexed with 8da, nag
      2. 1553046Domain d2a5cb_: 2a5c B: [126171]
        automated match to d1ij8b_
        protein/DNA complex; complexed with 8da, nag
    8. Domains for 2a8g:
      1. 1553036Domain d2a8ga_: 2a8g A: [126400]
        automated match to d1avda_
        complexed with gng, nag
      2. 1553037Domain d2a8gb_: 2a8g B: [126401]
        automated match to d1avda_
        complexed with gng, nag
    9. Domains for 2fhl:
      1. 1552990Domain d2fhla_: 2fhl A: [164389]
        automated match to d1rava_
        complexed with bni, fmt
      2. 1552991Domain d2fhlb_: 2fhl B: [164390]
        automated match to d1rava_
        complexed with bni, fmt
    10. Domains for 2fhn:
      1. 1552998Domain d2fhnx_: 2fhn X: [164391]
        automated match to d1rava_
        complexed with bni, fmt; mutant
      2. 1552999Domain d2fhny_: 2fhn Y: [164392]
        automated match to d1rava_
        complexed with bni, fmt; mutant
    11. Domain for 2mf6:
    12. Domains for 2of8:
      1. 1552992Domain d2of8a_: 2of8 A: [166666]
        automated match to d1rava_
        complexed with bni, fmt
      2. 1552993Domain d2of8b_: 2of8 B: [166667]
        automated match to d1rava_
        complexed with bni, fmt
    13. Domains for 2of9:
      1. 1553008Domain d2of9a_: 2of9 A: [166668]
        automated match to d1rava_
        complexed with fmt
      2. 1553009Domain d2of9b_: 2of9 B: [166669]
        automated match to d1rava_
        complexed with fmt
    14. Domains for 2ofa:
      1. 1553012Domain d2ofaa_: 2ofa A: [166670]
        automated match to d1rava_
        complexed with fmt
      2. 1553013Domain d2ofab_: 2ofa B: [166671]
        automated match to d1rava_
        complexed with fmt
    15. Domains for 2ofb:
      1. 1552994Domain d2ofba_: 2ofb A: [166672]
        automated match to d1rava_
        complexed with bni, fmt
      2. 1552995Domain d2ofbb_: 2ofb B: [166673]
        automated match to d1rava_
        complexed with bni, fmt
    16. Domains for 3fdc:
      1. 1553059Domain d3fdca_: 3fdc A: [246091]
        automated match to d4i60a_
        complexed with btf
      2. 1553060Domain d3fdcb_: 3fdc B: [246092]
        automated match to d4i60a_
        complexed with btf
    17. Domains for 3mm0:
      1. 1553047Domain d3mm0a_: 3mm0 A: [181391]
        automated match to d1rava_
      2. 1553048Domain d3mm0b_: 3mm0 B: [181392]
        automated match to d1rava_
      3. 1553049Domain d3mm0c_: 3mm0 C: [181393]
        automated match to d1rava_
      4. 1553050Domain d3mm0d_: 3mm0 D: [181394]
        automated match to d1rava_
      5. 1553051Domain d3mm0e_: 3mm0 E: [181395]
        automated match to d1rava_
      6. 1553052Domain d3mm0f_: 3mm0 F: [181396]
        automated match to d1rava_
      7. 1553053Domain d3mm0g_: 3mm0 G: [181397]
        automated match to d1rava_
      8. 1553054Domain d3mm0h_: 3mm0 H: [181398]
        automated match to d1rava_
      9. 1553055Domain d3mm0i_: 3mm0 I: [181399]
        automated match to d1rava_
      10. 1553056Domain d3mm0k_: 3mm0 K: [181400]
        automated match to d1rava_
      11. 1553057Domain d3mm0m_: 3mm0 M: [181401]
        automated match to d1rava_
      12. 1553058Domain d3mm0n_: 3mm0 N: [181402]
        automated match to d1rava_
    18. Domains for 3vgw:
      1. 1553014Domain d3vgwa_: 3vgw A: [186487]
        automated match to d1rava_
        complexed with nag, nvz, so4
      2. 1553015Domain d3vgwb_: 3vgw B: [186488]
        automated match to d1rava_
        complexed with nag, nvz, so4
      3. 1553016Domain d3vgwc_: 3vgw C: [186489]
        automated match to d1rava_
        complexed with nag, nvz, so4
      4. 1553017Domain d3vgwd_: 3vgw D: [186490]
        automated match to d1rava_
        complexed with nag, nvz, so4
      5. 1553018Domain d3vgwe_: 3vgw E: [186491]
        automated match to d1rava_
        complexed with nag, nvz, so4
      6. 1553019Domain d3vgwf_: 3vgw F: [186492]
        automated match to d1rava_
        complexed with nag, nvz, so4
      7. 1553020Domain d3vgwg_: 3vgw G: [186493]
        automated match to d1rava_
        complexed with nag, nvz, so4
      8. 1553021Domain d3vgwh_: 3vgw H: [186494]
        automated match to d1rava_
        complexed with nag, nvz, so4
    19. Domains for 3vhh:
      1. 1553038Domain d3vhha_: 3vhh A: [186499]
        automated match to d1rava_
        complexed with nag, so4, vhh
      2. 1553039Domain d3vhhb_: 3vhh B: [186500]
        automated match to d1rava_
        complexed with nag, so4, vhh
      3. 1553040Domain d3vhhc_: 3vhh C: [186501]
        automated match to d1rava_
        complexed with nag, so4, vhh
      4. 1553041Domain d3vhhd_: 3vhh D: [186502]
        automated match to d1rava_
        complexed with nag, so4, vhh
    20. Domains for 3vhi:
      1. 1553024Domain d3vhia_: 3vhi A: [186503]
        automated match to d1rava_
        complexed with nag, so4, vhi
      2. 1553025Domain d3vhib_: 3vhi B: [186504]
        automated match to d1rava_
        complexed with nag, so4, vhi
      3. 1553026Domain d3vhic_: 3vhi C: [186505]
        automated match to d1rava_
        complexed with nag, so4, vhi
      4. 1553027Domain d3vhid_: 3vhi D: [186506]
        automated match to d1rava_
        complexed with nag, so4, vhi
    21. Domains for 3vhm:
      1. 1553028Domain d3vhma_: 3vhm A: [186507]
        automated match to d1rava_
        complexed with nag, npk, so4
      2. 1553029Domain d3vhmb_: 3vhm B: [186508]
        automated match to d1rava_
        complexed with nag, npk, so4
      3. 1553030Domain d3vhmc_: 3vhm C: [186509]
        automated match to d1rava_
        complexed with nag, npk, so4
      4. 1553031Domain d3vhmd_: 3vhm D: [186510]
        automated match to d1rava_
        complexed with nag, npk, so4
    22. Domains for 4bcs:
      1. 1553032Domain d4bcsa_: 4bcs A: [228290]
        automated match to d4i60a_
        complexed with act, btn, peg, po4; mutant
      2. 1553033Domain d4bcsb_: 4bcs B: [234149]
        automated match to d4bcsa_
        complexed with act, btn, peg, po4; mutant
    23. Domain for 4i60:
    24. Domains for 4jhq:
      1. 1553034Domain d4jhqa_: 4jhq A: [229094]
        automated match to d4i60a_
        complexed with b6f, nag
      2. 1553035Domain d4jhqb_: 4jhq B: [229093]
        automated match to d4i60a_
        complexed with b6f, nag
  2. 1553062Streptomyces avidinii [TaxId:1895] [189343] (30 PDB entries)
    1. Domain for 2bc3:
    2. Domain for 2qcb:
    3. Domain for 2wpu:
    4. Domains for 2y3e:
      1. 1553074Domain d2y3ea_: 2y3e A: [170556]
        automated match to d1n9mc_
        complexed with gol
      2. 1553075Domain d2y3eb_: 2y3e B: [170557]
        automated match to d1n9mc_
        complexed with gol
    5. Domain for 2y3f:
    6. Domains for 3mg5:
      1. 1553067Domain d3mg5a_: 3mg5 A: [181113]
        automated match to d1n9mc_
        complexed with btn, gol; mutant
      2. 1553068Domain d3mg5b_: 3mg5 B: [181114]
        automated match to d1n9mc_
        complexed with btn, gol; mutant
      3. 1553069Domain d3mg5c_: 3mg5 C: [181115]
        automated match to d1n9mc_
        complexed with btn, gol; mutant
      4. 1553070Domain d3mg5d_: 3mg5 D: [181116]
        automated match to d1n9mc_
        complexed with btn, gol; mutant
    7. Domain for 3pk2:
    8. Domain for 3rdm:
    9. Domain for 3rdo:
    10. Domain for 3rdq:
    11. Domain for 3rds:
    12. Domain for 3rdu:
    13. Domains for 3rdx:
      1. 1553108Domain d3rdxa_: 3rdx A: [215744]
        automated match to d1mm9a_
        complexed with gol
      2. 1553109Domain d3rdxb_: 3rdx B: [215745]
        automated match to d1mm9a_
        complexed with gol
    14. Domain for 3re5:
    15. Domain for 3re6:
    16. Domains for 3t6f:
      1. 1553065Domain d3t6fa_: 3t6f A: [185662]
        automated match to d1n9mc_
        complexed with bso, btn, gol, so4
      2. 1553066Domain d3t6fb_: 3t6f B: [185663]
        automated match to d1n9mc_
        complexed with bso, btn, gol, so4
    17. Domain for 3t6l:
    18. Domains for 4bx5:
      1. 1553083Domain d4bx5a_: 4bx5 A: [228157]
        Other proteins in same PDB: d4bx5b_, d4bx5d_
        automated match to d4jnja_
        complexed with edo, pg4
      2. 1553084Domain d4bx5c_: 4bx5 C: [228156]
        Other proteins in same PDB: d4bx5b_, d4bx5d_
        automated match to d4jnja_
        complexed with edo, pg4
    19. Domains for 4bx6:
      1. 1553091Domain d4bx6a_: 4bx6 A: [228158]
        automated match to d4jnja_
        complexed with mpd
      2. 1553092Domain d4bx6b_: 4bx6 B: [234282]
        automated match to d4bx6c_
        complexed with mpd
      3. 1553093Domain d4bx6c_: 4bx6 C: [228159]
        automated match to d4jnja_
        complexed with mpd
      4. 1553094Domain d4bx6d_: 4bx6 D: [234284]
        automated match to d4bx6a_
        complexed with mpd
    20. Domains for 4bx7:
      1. 1553115Domain d4bx7a_: 4bx7 A: [228160]
        automated match to d4jnja_
        complexed with b4f, mpd
      2. 1553116Domain d4bx7b_: 4bx7 B: [234283]
        automated match to d4bx6c_
        complexed with b4f, mpd
    21. Domains for 4cph:
      1. 1553102Domain d4cpha_: 4cph A: [258649]
        automated match to d1n9mc_
        complexed with lh4
      2. 1553103Domain d4cphb_: 4cph B: [258652]
        automated match to d1n9mc_
        complexed with lh4
      3. 1553104Domain d4cphc_: 4cph C: [258651]
        automated match to d1n9mc_
        complexed with lh4
      4. 1553105Domain d4cphd_: 4cph D: [259186]
        automated match to d1n9mc_
        complexed with lh4
    22. Domains for 4cpi:
      1. 1553087Domain d4cpia_: 4cpi A: [259755]
        automated match to d1n9mc_
        complexed with ca, lh4, peg; mutant
      2. 1553088Domain d4cpib_: 4cpi B: [259187]
        automated match to d1n9mc_
        complexed with ca, lh4, peg; mutant
      3. 1553089Domain d4cpic_: 4cpi C: [258650]
        automated match to d1n9mc_
        complexed with ca, lh4, peg; mutant
    23. Domains for 4dne:
      1. 1553097Domain d4dnea_: 4dne A: [251501]
        automated match to d4ekva_
        complexed with dtb, so4; mutant
      2. 1553098Domain d4dneb_: 4dne B: [251502]
        automated match to d4ekva_
        complexed with dtb, so4; mutant
    24. Domain for 4ekv:
    25. Domains for 4gd9:
      1. 1553078Domain d4gd9a_: 4gd9 A: [202237]
        automated match to d4gd9b_
        complexed with btn, so4
      2. 1553079Domain d4gd9b_: 4gd9 B: [197245]
        automated match to d1swgd_
        complexed with btn, so4
      3. 1553080Domain d4gd9c_: 4gd9 C: [202238]
        automated match to d4gd9b_
        complexed with btn, so4
      4. 1553081Domain d4gd9d_: 4gd9 D: [202239]
        automated match to d4gd9b_
        complexed with btn, so4
    26. Domains for 4gda:
      1. 1553063Domain d4gdaa_: 4gda A: [202240]
        automated match to d4gdab_
        complexed with btn, eoh, gol, so4
      2. 1553064Domain d4gdab_: 4gda B: [197244]
        automated match to d1swgd_
        complexed with btn, eoh, gol, so4
    27. Domains for 4gjs:
      1. 1553100Domain d4gjsa_: 4gjs A: [234478]
        automated match to d4bx5a_
        complexed with 0od, rh
      2. 1553101Domain d4gjsb_: 4gjs B: [234479]
        automated match to d4bx5a_
        complexed with 0od, rh
    28. Domain for 4gjv:
    29. Domains for 4jnj:
      1. 1553110Domain d4jnja_: 4jnj A: [197198]
        automated match to d1rxkb_
        complexed with btn, zn
      2. 1553111Domain d4jnjb_: 4jnj B: [202749]
        automated match to d4jnja_
        complexed with btn, zn
      3. 1553112Domain d4jnjc_: 4jnj C: [202750]
        automated match to d4jnja_
        complexed with btn, zn
      4. 1553113Domain d4jnjd_: 4jnj D: [202751]
        automated match to d4jnja_
        complexed with btn, zn
    30. Domain for 4oka:

More info for Protein automated matches from b.61.1.1: Avidin/streptavidin

Timeline for Protein automated matches from b.61.1.1: Avidin/streptavidin: