Lineage for Protein: automated matches

  1. Root: SCOPe 2.02
  2. 1103260Class b: All beta proteins [48724] (174 folds)
  3. 1133645Fold b.61: Streptavidin-like [50875] (8 superfamilies)
    barrel, closed; n=8, S=10; meander
  4. 1133646Superfamily b.61.1: Avidin/streptavidin [50876] (2 families) (S)
  5. 1133647Family b.61.1.1: Avidin/streptavidin [50877] (3 proteins)
  6. 1133951Protein automated matches [190191] (2 species)
    not a true protein

Species:

  1. 1133952Chicken (Gallus gallus) [TaxId:9031] [186931] (19 PDB entries)
    1. Domains for 1vyo:
      1. 1133975Domain d1vyoa_: 1vyo A: [161871]
        automated match to d1rava_
        complexed with gol
      2. 1133976Domain d1vyob_: 1vyo B: [161872]
        automated match to d1rava_
        complexed with gol
    2. Domains for 1wbi:
      1. 1133965Domain d1wbia_: 1wbi A: [161939]
        automated match to d1rava_
        complexed with btn, gol, so4
      2. 1133966Domain d1wbib_: 1wbi B: [161940]
        automated match to d1rava_
        complexed with btn, gol, so4
      3. 1133967Domain d1wbic_: 1wbi C: [161941]
        automated match to d1rava_
        complexed with btn, gol, so4
      4. 1133968Domain d1wbid_: 1wbi D: [161942]
        automated match to d1rava_
        complexed with btn, gol, so4
      5. 1133969Domain d1wbie_: 1wbi E: [161943]
        automated match to d1rava_
        complexed with btn, gol, so4
      6. 1133970Domain d1wbif_: 1wbi F: [161944]
        automated match to d1rava_
        complexed with btn, gol, so4
      7. 1133971Domain d1wbig_: 1wbi G: [161945]
        automated match to d1rava_
        complexed with btn, gol, so4
      8. 1133972Domain d1wbih_: 1wbi H: [161946]
        automated match to d1rava_
        complexed with btn, gol, so4
    3. Domains for 1y52:
      1. 1133987Domain d1y52x_: 1y52 X: [162149]
        automated match to d1rava_
        complexed with btn, nag
      2. 1133988Domain d1y52y_: 1y52 Y: [162150]
        automated match to d1rava_
        complexed with btn, nag
    4. Domains for 1y53:
      1. 1133961Domain d1y53x_: 1y53 X: [162151]
        automated match to d1rava_
        complexed with fmt
      2. 1133962Domain d1y53y_: 1y53 Y: [162152]
        automated match to d1rava_
        complexed with fmt
    5. Domains for 1y55:
      1. 1133953Domain d1y55x_: 1y55 X: [162154]
        automated match to d1rava_
        complexed with btn, fmt; mutant
      2. 1133954Domain d1y55y_: 1y55 Y: [162155]
        automated match to d1rava_
        complexed with btn, fmt; mutant
    6. Domains for 2a5b:
      1. 1134003Domain d2a5ba_: 2a5b A: [126168]
        automated match to d1avdb_
        protein/DNA complex; complexed with 8hg, nag
      2. 1134004Domain d2a5bb_: 2a5b B: [126169]
        automated match to d1avdb_
        protein/DNA complex; complexed with 8hg, nag
    7. Domains for 2a5c:
      1. 1134005Domain d2a5ca_: 2a5c A: [126170]
        automated match to d1ij8b_
        protein/DNA complex; complexed with 8da, nag
      2. 1134006Domain d2a5cb_: 2a5c B: [126171]
        automated match to d1ij8b_
        protein/DNA complex; complexed with 8da, nag
    8. Domains for 2a8g:
      1. 1133997Domain d2a8ga_: 2a8g A: [126400]
        automated match to d1avda_
        complexed with gng, nag
      2. 1133998Domain d2a8gb_: 2a8g B: [126401]
        automated match to d1avda_
        complexed with gng, nag
    9. Domains for 2fhl:
      1. 1133955Domain d2fhla_: 2fhl A: [164389]
        automated match to d1rava_
        complexed with bni, fmt
      2. 1133956Domain d2fhlb_: 2fhl B: [164390]
        automated match to d1rava_
        complexed with bni, fmt
    10. Domains for 2fhn:
      1. 1133963Domain d2fhnx_: 2fhn X: [164391]
        automated match to d1rava_
        complexed with bni, fmt; mutant
      2. 1133964Domain d2fhny_: 2fhn Y: [164392]
        automated match to d1rava_
        complexed with bni, fmt; mutant
    11. Domains for 2of8:
      1. 1133957Domain d2of8a_: 2of8 A: [166666]
        automated match to d1rava_
        complexed with bni, fmt
      2. 1133958Domain d2of8b_: 2of8 B: [166667]
        automated match to d1rava_
        complexed with bni, fmt
    12. Domains for 2of9:
      1. 1133973Domain d2of9a_: 2of9 A: [166668]
        automated match to d1rava_
        complexed with fmt
      2. 1133974Domain d2of9b_: 2of9 B: [166669]
        automated match to d1rava_
        complexed with fmt
    13. Domains for 2ofa:
      1. 1133977Domain d2ofaa_: 2ofa A: [166670]
        automated match to d1rava_
        complexed with fmt
      2. 1133978Domain d2ofab_: 2ofa B: [166671]
        automated match to d1rava_
        complexed with fmt
    14. Domains for 2ofb:
      1. 1133959Domain d2ofba_: 2ofb A: [166672]
        automated match to d1rava_
        complexed with bni, fmt
      2. 1133960Domain d2ofbb_: 2ofb B: [166673]
        automated match to d1rava_
        complexed with bni, fmt
    15. Domains for 3mm0:
      1. 1134007Domain d3mm0a_: 3mm0 A: [181391]
        automated match to d1rava_
      2. 1134008Domain d3mm0b_: 3mm0 B: [181392]
        automated match to d1rava_
      3. 1134009Domain d3mm0c_: 3mm0 C: [181393]
        automated match to d1rava_
      4. 1134010Domain d3mm0d_: 3mm0 D: [181394]
        automated match to d1rava_
      5. 1134011Domain d3mm0e_: 3mm0 E: [181395]
        automated match to d1rava_
      6. 1134012Domain d3mm0f_: 3mm0 F: [181396]
        automated match to d1rava_
      7. 1134013Domain d3mm0g_: 3mm0 G: [181397]
        automated match to d1rava_
      8. 1134014Domain d3mm0h_: 3mm0 H: [181398]
        automated match to d1rava_
      9. 1134015Domain d3mm0i_: 3mm0 I: [181399]
        automated match to d1rava_
      10. 1134016Domain d3mm0k_: 3mm0 K: [181400]
        automated match to d1rava_
      11. 1134017Domain d3mm0m_: 3mm0 M: [181401]
        automated match to d1rava_
      12. 1134018Domain d3mm0n_: 3mm0 N: [181402]
        automated match to d1rava_
    16. Domains for 3vgw:
      1. 1133979Domain d3vgwa_: 3vgw A: [186487]
        automated match to d1rava_
        complexed with nag, nvz, so4
      2. 1133980Domain d3vgwb_: 3vgw B: [186488]
        automated match to d1rava_
        complexed with nag, nvz, so4
      3. 1133981Domain d3vgwc_: 3vgw C: [186489]
        automated match to d1rava_
        complexed with nag, nvz, so4
      4. 1133982Domain d3vgwd_: 3vgw D: [186490]
        automated match to d1rava_
        complexed with nag, nvz, so4
      5. 1133983Domain d3vgwe_: 3vgw E: [186491]
        automated match to d1rava_
        complexed with nag, nvz, so4
      6. 1133984Domain d3vgwf_: 3vgw F: [186492]
        automated match to d1rava_
        complexed with nag, nvz, so4
      7. 1133985Domain d3vgwg_: 3vgw G: [186493]
        automated match to d1rava_
        complexed with nag, nvz, so4
      8. 1133986Domain d3vgwh_: 3vgw H: [186494]
        automated match to d1rava_
        complexed with nag, nvz, so4
    17. Domains for 3vhh:
      1. 1133999Domain d3vhha_: 3vhh A: [186499]
        automated match to d1rava_
        complexed with nag, so4, vhh
      2. 1134000Domain d3vhhb_: 3vhh B: [186500]
        automated match to d1rava_
        complexed with nag, so4, vhh
      3. 1134001Domain d3vhhc_: 3vhh C: [186501]
        automated match to d1rava_
        complexed with nag, so4, vhh
      4. 1134002Domain d3vhhd_: 3vhh D: [186502]
        automated match to d1rava_
        complexed with nag, so4, vhh
    18. Domains for 3vhi:
      1. 1133989Domain d3vhia_: 3vhi A: [186503]
        automated match to d1rava_
        complexed with nag, so4, vhi
      2. 1133990Domain d3vhib_: 3vhi B: [186504]
        automated match to d1rava_
        complexed with nag, so4, vhi
      3. 1133991Domain d3vhic_: 3vhi C: [186505]
        automated match to d1rava_
        complexed with nag, so4, vhi
      4. 1133992Domain d3vhid_: 3vhi D: [186506]
        automated match to d1rava_
        complexed with nag, so4, vhi
    19. Domains for 3vhm:
      1. 1133993Domain d3vhma_: 3vhm A: [186507]
        automated match to d1rava_
        complexed with nag, npk, so4
      2. 1133994Domain d3vhmb_: 3vhm B: [186508]
        automated match to d1rava_
        complexed with nag, npk, so4
      3. 1133995Domain d3vhmc_: 3vhm C: [186509]
        automated match to d1rava_
        complexed with nag, npk, so4
      4. 1133996Domain d3vhmd_: 3vhm D: [186510]
        automated match to d1rava_
        complexed with nag, npk, so4
  2. 1134019Streptomyces avidinii [TaxId:1895] [189343] (8 PDB entries)
    1. Domains for 2y3e:
      1. 1134029Domain d2y3ea_: 2y3e A: [170556]
        automated match to d1n9mc_
        complexed with gol
      2. 1134030Domain d2y3eb_: 2y3e B: [170557]
        automated match to d1n9mc_
        complexed with gol
    2. Domain for 2y3f:
    3. Domains for 3mg5:
      1. 1134023Domain d3mg5a_: 3mg5 A: [181113]
        automated match to d1n9mc_
        complexed with btn, gol; mutant
      2. 1134024Domain d3mg5b_: 3mg5 B: [181114]
        automated match to d1n9mc_
        complexed with btn, gol; mutant
      3. 1134025Domain d3mg5c_: 3mg5 C: [181115]
        automated match to d1n9mc_
        complexed with btn, gol; mutant
      4. 1134026Domain d3mg5d_: 3mg5 D: [181116]
        automated match to d1n9mc_
        complexed with btn, gol; mutant
    4. Domains for 3t6f:
      1. 1134021Domain d3t6fa_: 3t6f A: [185662]
        automated match to d1n9mc_
        complexed with bso, btn, gol, so4
      2. 1134022Domain d3t6fb_: 3t6f B: [185663]
        automated match to d1n9mc_
        complexed with bso, btn, gol, so4
    5. Domain for 3t6l:
    6. Domain for 4gd9:
    7. Domain for 4gda:
    8. Domain for 4jnj:

More info for Protein automated matches from b.61.1.1: Avidin/streptavidin

Timeline for Protein automated matches from b.61.1.1: Avidin/streptavidin: