Lineage for Protein: automated matches

  1. Root: SCOPe 2.06
  2. 2078559Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
  3. 2133075Fold c.68: Nucleotide-diphospho-sugar transferases [53447] (1 superfamily)
    3 layers: a/b/a; mixed beta-sheet of 7 strands, order 3214657; strand 6 is antiparallel to the rest
  4. 2133076Superfamily c.68.1: Nucleotide-diphospho-sugar transferases [53448] (20 families) (S)
  5. 2133477Family c.68.1.9: alpha-1,3-galactosyltransferase-like [64131] (4 protein domains)
    automatically mapped to Pfam PF03414
  6. 2133594Protein automated matches [190178] (2 species)
    not a true protein

Species:

  1. 2133595Cow (Bos taurus) [TaxId:9913] [188618] (2 PDB entries)
    1. Domain for 2vxl:
    2. Domains for 2vxm:
      1. 2133597Domain d2vxma_: 2vxm A: [168918]
        automated match to d1fg5n_
        complexed with gol, mpd; mutant
      2. 2133598Domain d2vxmb_: 2vxm B: [168919]
        automated match to d1fg5n_
        complexed with gol, mpd; mutant
      3. 2133599Domain d2vxmc_: 2vxm C: [168920]
        automated match to d1fg5n_
        complexed with gol, mpd; mutant
      4. 2133600Domain d2vxmd_: 2vxm D: [168921]
        automated match to d1fg5n_
        complexed with gol, mpd; mutant
  2. 2133601Human (Homo sapiens) [TaxId:9606] [186910] (75 PDB entries)
    1. Domain for 1ziz:
    2. Domain for 1zj0:
    3. Domain for 1zj1:
    4. Domain for 1zj2:
    5. Domain for 1zj3:
    6. Domain for 1zjp:
    7. Domain for 2a8u:
    8. Domain for 2rit:
    9. Domain for 2rix:
    10. Domain for 2riy:
    11. Domain for 2rj8:
    12. Domain for 2rj9:
    13. Domains for 2y7a:
      1. 2133662Domain d2y7aa1: 2y7a A:64-345 [231595]
        Other proteins in same PDB: d2y7aa2
        automated match to d2y7ab_
        complexed with mn, udp
      2. 2133663Domain d2y7ab_: 2y7a B: [196020]
        Other proteins in same PDB: d2y7aa2
        automated match to d2rj1a_
        complexed with mn, udp
      3. 2133664Domain d2y7ac_: 2y7a C: [196019]
        Other proteins in same PDB: d2y7aa2
        automated match to d2rj1a_
        complexed with mn, udp
      4. 2133665Domain d2y7ad_: 2y7a D: [231596]
        Other proteins in same PDB: d2y7aa2
        automated match to d2y7ab_
        complexed with mn, udp
    14. Domain for 3i0c:
    15. Domain for 3i0d:
    16. Domain for 3i0e:
    17. Domain for 3i0f:
    18. Domain for 3i0g:
    19. Domain for 3i0h:
    20. Domain for 3i0i:
    21. Domain for 3i0j:
    22. Domain for 3i0k:
    23. Domain for 3i0l:
    24. Domain for 3sxd:
    25. Domain for 3v0l:
    26. Domains for 3v0m:
      1. 2133637Domain d3v0ma1: 3v0m A:64-346 [192611]
        Other proteins in same PDB: d3v0ma2, d3v0mb2
        automated match to d3sxga_
        complexed with 5gw, bhe, mn, so4; mutant
      2. 2133638Domain d3v0mb1: 3v0m B:64-346 [192608]
        Other proteins in same PDB: d3v0ma2, d3v0mb2
        automated match to d3sxga_
        complexed with 5gw, bhe, mn, so4; mutant
    27. Domains for 3v0n:
      1. 2133643Domain d3v0na1: 3v0n A:64-345 [192606]
        Other proteins in same PDB: d3v0na2, d3v0nb2
        automated match to d3sxga_
        complexed with 3gw, 4gw, gol, mn, so4; mutant
      2. 2133644Domain d3v0nb1: 3v0n B:64-345 [192842]
        Other proteins in same PDB: d3v0na2, d3v0nb2
        automated match to d3sxga_
        complexed with 3gw, 4gw, gol, mn, so4; mutant
    28. Domains for 3v0o:
      1. 2133631Domain d3v0oa_: 3v0o A: [192607]
        automated match to d3sxga_
        complexed with 4gw, bhe, mn, so4; mutant
      2. 2133632Domain d3v0ob_: 3v0o B: [192843]
        automated match to d3sxga_
        complexed with 4gw, bhe, mn, so4; mutant
    29. Domains for 3v0p:
      1. 2133658Domain d3v0pa1: 3v0p A:64-353 [192610]
        Other proteins in same PDB: d3v0pa2, d3v0pb2
        automated match to d3sxga_
        complexed with 4gw, bhe, mn, so4; mutant
      2. 2133659Domain d3v0pb1: 3v0p B:64-346 [192844]
        Other proteins in same PDB: d3v0pa2, d3v0pb2
        automated match to d3sxga_
        complexed with 4gw, bhe, mn, so4; mutant
    30. Domains for 3v0q:
      1. 2133648Domain d3v0qa1: 3v0q A:64-354 [192612]
        Other proteins in same PDB: d3v0qa2, d3v0qb2
        automated match to d3sxga_
        complexed with bhe, gol, mn, so4, udp; mutant
      2. 2133649Domain d3v0qb1: 3v0q B:64-354 [192845]
        Other proteins in same PDB: d3v0qa2, d3v0qb2
        automated match to d3sxga_
        complexed with bhe, gol, mn, so4, udp; mutant
    31. Domains for 3zgf:
      1. 2133646Domain d3zgfa_: 3zgf A: [192613]
        automated match to d3sxga_
        complexed with iug, mn, so4, udp; mutant
      2. 2133647Domain d3zgfb_: 3zgf B: [192846]
        automated match to d3sxga_
        complexed with iug, mn, so4, udp; mutant
    32. Domains for 4c2s:
      1. 2133667Domain d4c2sa1: 4c2s A:64-353 [227839]
        Other proteins in same PDB: d4c2sa2
        automated match to d2rj7a_
        complexed with mn, udp; mutant
      2. 2133668Domain d4c2sb_: 4c2s B: [227840]
        Other proteins in same PDB: d4c2sa2
        automated match to d2rj7a_
        complexed with mn, udp; mutant
    33. Domain for 4fqw:
    34. Domain for 4kc1:
    35. Domain for 4kc2:
    36. Domain for 4kc4:
    37. Domain for 4y62:
    38. Domain for 4y63:
    39. Domain for 4y64:
    40. Domain for 5bxc:
    41. Domain for 5c1g:
    42. Domain for 5c1h:
    43. Domain for 5c1l:
    44. Domain for 5c36:
    45. Domain for 5c38:
    46. Domain for 5c3a:
    47. Domain for 5c3b:
    48. Domain for 5c3d:
    49. Domain for 5c47:
    50. Domain for 5c48:
    51. Domain for 5c49:
    52. Domain for 5c4b:
    53. Domain for 5c4c:
    54. Domain for 5c4d:
    55. Domain for 5c4e:
    56. Domain for 5c4f:
    57. Domain for 5c8r:
    58. Domain for 5cmg:
    59. Domain for 5cmh:
    60. Domain for 5cmi:
    61. Domain for 5cmj:
    62. Domain for 5cql:
    63. Domain for 5cqm:
    64. Domain for 5cqn:
    65. Domain for 5cqo:
    66. Domain for 5cqp:
    67. Domain for 5m79:
    68. Domain for 5m7a:
    69. Domain for 5m7b:
    70. Domains for 5m7c:
      1. 2298769Domain d5m7ca1: 5m7c A:64-354 [342070]
        Other proteins in same PDB: d5m7ca2, d5m7cb2
        automated match to d3zgfa_
        complexed with mn, peg, so4, udp
      2. 2298771Domain d5m7cb1: 5m7c B:64-354 [342072]
        Other proteins in same PDB: d5m7ca2, d5m7cb2
        automated match to d3zgfa_
        complexed with mn, peg, so4, udp
    71. Domain for 5m7d:
    72. Domain for 5tjk:
    73. Domain for 5tjl:
    74. Domain for 5tjn:
    75. Domain for 5tjo:

More info for Protein automated matches from c.68.1.9: alpha-1,3-galactosyltransferase-like

Timeline for Protein automated matches from c.68.1.9: alpha-1,3-galactosyltransferase-like: