Lineage for Protein: automated matches

  1. Root: SCOPe 2.06
  2. 2078559Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
  3. 2078560Fold c.1: TIM beta/alpha-barrel [51350] (33 superfamilies)
    contains parallel beta-sheet barrel, closed; n=8, S=8; strand order 12345678
    the first seven superfamilies have similar phosphate-binding sites
  4. 2080913Superfamily c.1.7: NAD(P)-linked oxidoreductase [51430] (2 families) (S)
  5. 2080914Family c.1.7.1: Aldo-keto reductases (NADP) [51431] (16 protein domains)
    Common fold covers whole protein structure
  6. 2081255Protein automated matches [190169] (5 species)
    not a true protein

Species:

  1. 2081256Human (Homo sapiens) [TaxId:9606] [188399] (45 PDB entries)
    1. Domain for 1z3n:
    2. Domain for 1z89:
    3. Domain for 1z8a:
    4. Domain for 1zsx:
    5. Domains for 2bp1:
      1. 2081309Domain d2bp1a_: 2bp1 A: [241316]
        automated match to d2c91a_
        complexed with flc, ndp
      2. 2081310Domain d2bp1b_: 2bp1 B: [241317]
        automated match to d2c91a_
        complexed with flc, ndp
      3. 2081311Domain d2bp1c_: 2bp1 C: [241318]
        automated match to d2c91a_
        complexed with flc, ndp
      4. 2081312Domain d2bp1d_: 2bp1 D: [241319]
        automated match to d2c91a_
        complexed with flc, ndp
    6. Domains for 2clp:
      1. 2081320Domain d2clpa_: 2clp A: [241456]
        automated match to d1gvea_
        complexed with ca, ndp
      2. 2081321Domain d2clpb_: 2clp B: [241457]
        automated match to d1gvea_
        complexed with ca, ndp
      3. 2081322Domain d2clpc_: 2clp C: [241458]
        automated match to d1gvea_
        complexed with ca, ndp
      4. 2081323Domain d2clpd_: 2clp D: [241459]
        automated match to d1gvea_
        complexed with ca, ndp
      5. 2081324Domain d2clpe_: 2clp E: [241460]
        automated match to d1gvea_
        complexed with ca, ndp
      6. 2081325Domain d2clpf_: 2clp F: [241461]
        automated match to d1gvea_
        complexed with ca, ndp
      7. 2081326Domain d2clpg_: 2clp G: [241462]
        automated match to d1gvea_
        complexed with ca, ndp
      8. 2081327Domain d2clph_: 2clp H: [241463]
        automated match to d1gvea_
        complexed with ca, ndp
      9. 2081328Domain d2clpi_: 2clp I: [241464]
        automated match to d1gvea_
        complexed with ca, ndp
      10. 2081329Domain d2clpj_: 2clp J: [241465]
        automated match to d1gvea_
        complexed with ca, ndp
      11. 2081330Domain d2clpk_: 2clp K: [241466]
        automated match to d1gvea_
        complexed with ca, ndp
    7. Domain for 2dux:
    8. Domain for 2duz:
    9. Domain for 2dv0:
    10. Domains for 2fvl:
      1. 2081313Domain d2fvla_: 2fvl A: [164478]
        automated match to d1mrqa_
        complexed with nap
      2. 2081314Domain d2fvlb_: 2fvl B: [164479]
        automated match to d1mrqa_
        complexed with nap
      3. 2081315Domain d2fvlc_: 2fvl C: [164480]
        automated match to d1mrqa_
        complexed with nap
    11. Domain for 2hv5:
    12. Domain for 2hvn:
    13. Domain for 2hvo:
    14. Domain for 2i16:
    15. Domain for 2i17:
    16. Domain for 2ikg:
    17. Domain for 2ikh:
    18. Domain for 2iki:
    19. Domain for 2ikj:
    20. Domain for 2j8t:
    21. Domain for 2nvc:
    22. Domain for 2nvd:
    23. Domain for 2qxw:
    24. Domain for 2r24:
    25. Domain for 3bcj:
    26. Domains for 3bur:
      1. 2081285Domain d3bura_: 3bur A: [172829]
        automated match to d1q13a_
        complexed with gol, nap, tes
      2. 2081286Domain d3burb_: 3bur B: [172830]
        automated match to d1q13a_
        complexed with gol, nap, tes
    27. Domains for 3buv:
      1. 2081268Domain d3buva_: 3buv A: [172831]
        automated match to d1q13a_
        complexed with epe, gol, nap
      2. 2081269Domain d3buvb_: 3buv B: [172832]
        automated match to d1q13a_
        complexed with epe, gol, nap
    28. Domains for 3bv7:
      1. 2081298Domain d3bv7a_: 3bv7 A: [172833]
        automated match to d1q13a_
        complexed with gol, nap
      2. 2081299Domain d3bv7b_: 3bv7 B: [172834]
        automated match to d1q13a_
        complexed with gol, nap
    29. Domain for 3c3u:
    30. Domains for 3caq:
      1. 2081316Domain d3caqa_: 3caq A: [173104]
        automated match to d1q13a_
        complexed with bme, edo, mpd, ndp
      2. 2081317Domain d3caqb_: 3caq B: [173105]
        automated match to d1q13a_
        complexed with bme, edo, mpd, ndp
    31. Domains for 3cas:
      1. 2081305Domain d3casa_: 3cas A: [173106]
        automated match to d1q13a_
        complexed with asd, bme, edo, nap
      2. 2081306Domain d3casb_: 3cas B: [173107]
        automated match to d1q13a_
        complexed with asd, bme, edo, nap
    32. Domains for 3cav:
      1. 2081300Domain d3cava_: 3cav A: [173108]
        automated match to d1q13a_
        complexed with bme, ci2, edo, nap
      2. 2081301Domain d3cavb_: 3cav B: [173109]
        automated match to d1q13a_
        complexed with bme, ci2, edo, nap
    33. Domains for 3cmf:
      1. 2081296Domain d3cmfa_: 3cmf A: [208901]
        automated match to d3caqb_
        complexed with nap, pdn
      2. 2081297Domain d3cmfb_: 3cmf B: [208902]
        automated match to d3caqb_
        complexed with nap, pdn
    34. Domains for 3cot:
      1. 2081303Domain d3cota_: 3cot A: [208918]
        automated match to d3caqb_
        complexed with nap, str
      2. 2081304Domain d3cotb_: 3cot B: [208919]
        automated match to d3caqb_
        complexed with nap, str
    35. Domains for 3dop:
      1. 2081307Domain d3dopa_: 3dop A: [209248]
        automated match to d3caqb_
        complexed with bdt, nap
      2. 2081308Domain d3dopb_: 3dop B: [209249]
        automated match to d3caqb_
        complexed with bdt, nap
    36. Domains for 3g1r:
      1. 2081282Domain d3g1ra_: 3g1r A: [210311]
        automated match to d3caqb_
        complexed with fit, nap
      2. 2081283Domain d3g1rb_: 3g1r B: [210312]
        automated match to d3caqb_
        complexed with fit, nap
    37. Domain for 3gug:
    38. Domain for 3nty:
    39. Domain for 3u2c:
    40. Domains for 3uzw:
      1. 2081291Domain d3uzwa_: 3uzw A: [217574]
        automated match to d3caqb_
        complexed with cl, nap; mutant
      2. 2081292Domain d3uzwb_: 3uzw B: [217575]
        automated match to d3caqb_
        complexed with cl, nap; mutant
    41. Domains for 3uzx:
      1. 2081280Domain d3uzxa_: 3uzx A: [217576]
        automated match to d3caqb_
        complexed with aom, aox, cl, nap; mutant
      2. 2081281Domain d3uzxb_: 3uzx B: [217577]
        automated match to d3caqb_
        complexed with aom, aox, cl, nap; mutant
    42. Domains for 3uzy:
      1. 2081289Domain d3uzya_: 3uzy A: [217578]
        automated match to d3caqb_
        complexed with bdt, cl, nap; mutant
      2. 2081290Domain d3uzyb_: 3uzy B: [217579]
        automated match to d3caqb_
        complexed with bdt, cl, nap; mutant
    43. Domains for 3uzz:
      1. 2081293Domain d3uzza_: 3uzz A: [217580]
        automated match to d3caqb_
        complexed with asd, cl, nap, tes; mutant
      2. 2081294Domain d3uzzb_: 3uzz B: [217581]
        automated match to d3caqb_
        complexed with asd, cl, nap, tes; mutant
    44. Domains for 4xo6:
      1. 2273144Domain d4xo6a1: 4xo6 A:2-323 [316445]
        Other proteins in same PDB: d4xo6a2, d4xo6b2
        automated match to d2fgba_
        complexed with 5sd, aox, edo, gol, nap, so4
      2. 2273195Domain d4xo6b1: 4xo6 B:2-323 [316496]
        Other proteins in same PDB: d4xo6a2, d4xo6b2
        automated match to d2fgba_
        complexed with 5sd, aox, edo, gol, nap, so4
    45. Domains for 4yvp:
      1. 2081318Domain d4yvpa_: 4yvp A: [279660]
        automated match to d1j96a_
        complexed with gbm, nap
      2. 2081319Domain d4yvpb_: 4yvp B: [279662]
        automated match to d1j96a_
        complexed with gbm, nap
  2. 2081331Mouse (Mus musculus) [TaxId:10090] [187524] (12 PDB entries)
    1. Domains for 2c91:
      1. 2081347Domain d2c91a_: 2c91 A: [163324]
        automated match to d1gvea_
        complexed with gol, mes, nap, po4, tla
      2. 2081348Domain d2c91b_: 2c91 B: [163325]
        automated match to d1gvea_
        complexed with gol, mes, nap, po4, tla
      3. 2081349Domain d2c91c_: 2c91 C: [163326]
        automated match to d1gvea_
        complexed with gol, mes, nap, po4, tla
      4. 2081350Domain d2c91d_: 2c91 D: [163327]
        automated match to d1gvea_
        complexed with gol, mes, nap, po4, tla
      5. 2081351Domain d2c91e_: 2c91 E: [163328]
        automated match to d1gvea_
        complexed with gol, mes, nap, po4, tla
      6. 2081352Domain d2c91f_: 2c91 F: [163329]
        automated match to d1gvea_
        complexed with gol, mes, nap, po4, tla
      7. 2081353Domain d2c91g_: 2c91 G: [163330]
        automated match to d1gvea_
        complexed with gol, mes, nap, po4, tla
      8. 2081354Domain d2c91h_: 2c91 H: [163331]
        automated match to d1gvea_
        complexed with gol, mes, nap, po4, tla
      9. 2081355Domain d2c91i_: 2c91 I: [163332]
        automated match to d1gvea_
        complexed with gol, mes, nap, po4, tla
      10. 2081356Domain d2c91j_: 2c91 J: [163333]
        automated match to d1gvea_
        complexed with gol, mes, nap, po4, tla
    2. Domains for 2he5:
      1. 2081359Domain d2he5a_: 2he5 A: [165064]
        automated match to d1mrqa_
        complexed with act, bme, ndp
      2. 2081360Domain d2he5b_: 2he5 B: [165065]
        automated match to d1mrqa_
        complexed with act, bme, ndp
      3. 2081361Domain d2he5c_: 2he5 C: [165066]
        automated match to d1mrqa_
        complexed with act, bme, ndp
      4. 2081362Domain d2he5d_: 2he5 D: [165067]
        automated match to d1mrqa_
        complexed with act, bme, ndp
    3. Domains for 2he8:
      1. 2081341Domain d2he8a_: 2he8 A: [165068]
        automated match to d1mrqa_
        complexed with act, bme, gol
      2. 2081342Domain d2he8b_: 2he8 B: [165069]
        automated match to d1mrqa_
        complexed with act, bme, gol
    4. Domains for 2hej:
      1. 2081333Domain d2heja_: 2hej A: [165072]
        automated match to d1mrqa_
        complexed with bme, edo, mpd, ndp
      2. 2081334Domain d2hejb_: 2hej B: [165073]
        automated match to d1mrqa_
        complexed with bme, edo, mpd, ndp
    5. Domains for 2ipf:
      1. 2081337Domain d2ipfa_: 2ipf A: [165630]
        automated match to d1mrqa_
        complexed with bme, edo, ffa, nap, trs
      2. 2081338Domain d2ipfb_: 2ipf B: [165631]
        automated match to d1mrqa_
        complexed with bme, edo, ffa, nap, trs
    6. Domains for 2ipg:
      1. 2081339Domain d2ipga_: 2ipg A: [165632]
        automated match to d1j96a_
        complexed with bme, edo, ffa, nap; mutant
      2. 2081340Domain d2ipgb_: 2ipg B: [165633]
        automated match to d1j96a_
        complexed with bme, edo, ffa, nap; mutant
    7. Domains for 2p5n:
      1. 2081345Domain d2p5na_: 2p5n A: [167014]
        automated match to d1mrqa_
        complexed with mpd, ndp
      2. 2081346Domain d2p5nb_: 2p5n B: [167015]
        automated match to d1mrqa_
        complexed with mpd, ndp
    8. Domains for 3cv6:
      1. 2081343Domain d3cv6a_: 3cv6 A: [173489]
        automated match to d1j96a_
        complexed with bme, hxs, nap; mutant
      2. 2081344Domain d3cv6b_: 3cv6 B: [173490]
        automated match to d1j96a_
        complexed with bme, hxs, nap; mutant
    9. Domains for 3fjn:
      1. 2081357Domain d3fjna_: 3fjn A: [175841]
        automated match to d1mrqa_
        complexed with act; mutant
      2. 2081358Domain d3fjnb_: 3fjn B: [175842]
        automated match to d1mrqa_
        complexed with act; mutant
    10. Domain for 3ln3:
    11. Domains for 4gac:
      1. 2081335Domain d4gaca_: 4gac A: [194361]
        automated match to d2alra_
        complexed with edo, flc
      2. 2081336Domain d4gacb_: 4gac B: [194360]
        automated match to d2alra_
        complexed with edo, flc
    12. Domain for 5uxf:
  3. 2081363Norway rat (Rattus norvegicus) [TaxId:10116] [186935] (2 PDB entries)
    1. Domains for 3o3r:
      1. 2081366Domain d3o3ra_: 3o3r A: [182782]
        automated match to d1frba_
        complexed with nap
      2. 2081367Domain d3o3rb_: 3o3r B: [182783]
        automated match to d1frba_
        complexed with nap
    2. Domains for 3qkz:
      1. 2081364Domain d3qkza_: 3qkz A: [195953]
        automated match to d3o3ra_
        complexed with nap; mutant
      2. 2081365Domain d3qkzb_: 3qkz B: [195952]
        automated match to d3o3ra_
        complexed with nap; mutant
  4. 2081368Salmonella enterica [TaxId:99287] [259716] (1 PDB entry)
  5. 2081372Yersinia pestis [TaxId:632] [228396] (1 PDB entry)

More info for Protein automated matches from c.1.7.1: Aldo-keto reductases (NADP)

Timeline for Protein automated matches from c.1.7.1: Aldo-keto reductases (NADP):