Lineage for Protein: automated matches

  1. Root: SCOPe 2.06
  2. 2017114Class b: All beta proteins [48724] (177 folds)
  3. 2062521Fold b.60: Lipocalins [50813] (1 superfamily)
    barrel, closed or opened; n=8, S=12; meander
  4. 2062522Superfamily b.60.1: Lipocalins [50814] (10 families) (S)
    bind hydrophobic ligands in their interior
  5. 2062523Family b.60.1.1: Retinol binding protein-like [50815] (22 protein domains)
    barrel, closed; n=8, S=12, meander
  6. 2062960Protein automated matches [190163] (13 species)
    not a true protein

Species:

  1. 2062961American lobster (Homarus americanus) [TaxId:6706] [194849] (1 PDB entry)
  2. 2062964Brown ear tick (Rhipicephalus appendiculatus) [TaxId:34631] [189209] (2 PDB entries)
    1. Domains for 3g7x:
      1. 2062965Domain d3g7xa_: 3g7x A: [176410]
        automated match to d1qfta_
        complexed with gol, hsm; mutant
      2. 2062966Domain d3g7xb_: 3g7x B: [176411]
        automated match to d1qfta_
        complexed with gol, hsm; mutant
    2. Domains for 3gaq:
      1. 2062967Domain d3gaqa1: 3gaq A:1-171 [176483]
        Other proteins in same PDB: d3gaqa2, d3gaqb2
        automated match to d1qfta_
        mutant
      2. 2062968Domain d3gaqb1: 3gaq B:1-171 [176484]
        Other proteins in same PDB: d3gaqa2, d3gaqb2
        automated match to d1qfta_
        mutant
  3. 2062969Chicken (Gallus gallus) [TaxId:9031] [189846] (1 PDB entry)
  4. 2062972Cow (Bos taurus) [TaxId:9913] [188392] (1 PDB entry)
  5. 2062974Escherichia coli [TaxId:562] [187394] (1 PDB entry)
  6. 2062977Goat (Capra hircus) [TaxId:9925] [257696] (2 PDB entries)
    1. Domains for 4omw:
      1. 2062979Domain d4omwa_: 4omw A: [261852]
        automated match to d4nlja_
        complexed with gol, so4, te4
      2. 2062980Domain d4omwb_: 4omw B: [261854]
        automated match to d4nlja_
        complexed with gol, so4, te4
      3. 2062981Domain d4omwc_: 4omw C: [261855]
        automated match to d4nlja_
        complexed with gol, so4, te4
      4. 2062982Domain d4omwd_: 4omw D: [261119]
        automated match to d4nlja_
        complexed with gol, so4, te4
    2. Domain for 4omx:
  7. 2062983Horse (Equus caballus) [TaxId:9796] [189576] (1 PDB entry)
  8. 2062986Human (Homo sapiens) [TaxId:9606] [188452] (13 PDB entries)
    1. Domain for 2ova:
    2. Domain for 2ovd:
    3. Domain for 2ove:
    4. Domain for 2qos:
    5. Domain for 2rd7:
    6. Domain for 3bx7:
    7. Domains for 3bx8:
      1. 2062995Domain d3bx8a_: 3bx8 A: [172895]
        automated match to d1ngla_
        complexed with 1pe, pe5
      2. 2062996Domain d3bx8b_: 3bx8 B: [172896]
        automated match to d1ngla_
        complexed with 1pe, pe5
      3. 2062997Domain d3bx8c_: 3bx8 C: [172897]
        automated match to d1ngla_
        complexed with 1pe, pe5
      4. 2062998Domain d3bx8d_: 3bx8 D: [172898]
        automated match to d1ngla_
        complexed with 1pe, pe5
      5. 2062999Domain d3bx8e_: 3bx8 E: [172899]
        automated match to d1ngla_
        complexed with 1pe, pe5
      6. 2063000Domain d3bx8f_: 3bx8 F: [172900]
        automated match to d1ngla_
        complexed with 1pe, pe5
      7. 2063001Domain d3bx8g_: 3bx8 G: [172901]
        automated match to d1ngla_
        complexed with 1pe, pe5
      8. 2063002Domain d3bx8h_: 3bx8 H: [172902]
        automated match to d1ngla_
        complexed with 1pe, pe5
    8. Domains for 3dsz:
      1. 2062991Domain d3dsza_: 3dsz A: [174216]
        automated match to d1ngla_
        complexed with liz, yt3
      2. 2062992Domain d3dszb_: 3dsz B: [174217]
        automated match to d1ngla_
        complexed with liz, yt3
    9. Domains for 3fmz:
      1. 2063010Domain d3fmza_: 3fmz A: [246169]
        automated match to d1qabe_
        complexed with 2t1
      2. 2063011Domain d3fmzb_: 3fmz B: [246170]
        automated match to d1qabe_
        complexed with 2t1
    10. Domain for 3ojy:
    11. Domains for 3tzs:
      1. 2063003Domain d3tzsa_: 3tzs A: [186039]
        automated match to d1ngla_
        complexed with cl, edo, phu, so4; mutant
      2. 2063004Domain d3tzsb_: 3tzs B: [186040]
        automated match to d1ngla_
        complexed with cl, edo, phu, so4; mutant
      3. 2063005Domain d3tzsc_: 3tzs C: [186041]
        automated match to d1ngla_
        complexed with cl, edo, phu, so4; mutant
    12. Domains for 4o9s:
      1. 2063006Domain d4o9sa_: 4o9s A: [258024]
        automated match to d1qabe_
        complexed with 2ry, cl, edo, peg
      2. 2063007Domain d4o9sb_: 4o9s B: [258025]
        automated match to d1qabe_
        complexed with 2ry, cl, edo, peg
    13. Domains for 4psq:
      1. 2063008Domain d4psqa_: 4psq A: [258236]
        automated match to d1qabe_
        complexed with 2wl, edo, po4
      2. 2063009Domain d4psqb_: 4psq B: [258237]
        automated match to d1qabe_
        complexed with 2wl, edo, po4
  9. 2063013Mouse (Mus musculus) [TaxId:10090] [188249] (10 PDB entries)
    1. Domain for 2l9c:
    2. Domain for 2lb6:
    3. Domain for 2nnd:
    4. Domain for 2nne:
    5. Domain for 3kff:
    6. Domain for 3kfg:
    7. Domain for 3kfh:
    8. Domain for 3kfi:
    9. Domain for 3s26:
    10. Domains for 3u9p:
      1. 2063021Domain d3u9pc_: 3u9p C: [196983]
        Other proteins in same PDB: d3u9pl1, d3u9pl2, d3u9pm1, d3u9pm2
        automated match to d3s26a_
      2. 2063022Domain d3u9pd_: 3u9p D: [196984]
        Other proteins in same PDB: d3u9pl1, d3u9pl2, d3u9pm1, d3u9pm2
        automated match to d3s26a_
  10. 2063025Norway rat (Rattus norvegicus) [TaxId:10116] [237753] (2 PDB entries)
    1. Domain for 2k23:
    2. Domains for 3zq3:
      1. 2063026Domain d3zq3a_: 3zq3 A: [237754]
        automated match to d1df3a_
      2. 2063027Domain d3zq3b_: 3zq3 B: [237921]
        automated match to d3zq3a_
      3. 2063028Domain d3zq3c_: 3zq3 C: [237920]
        automated match to d3zq3a_
      4. 2063029Domain d3zq3d_: 3zq3 D: [237755]
        automated match to d1df3a_
  11. 2063031Reindeer (Rangifer tarandus) [TaxId:9870] [186888] (1 PDB entry)
  12. 2063037Rhodnius prolixus [TaxId:13249] [187425] (3 PDB entries)
    1. Domain for 2at3:
    2. Domains for 4gnw:
      1. 2063039Domain d4gnwa_: 4gnw A: [227915]
        automated match to d1sy3a_
        complexed with hem, nh3, po4; mutant
      2. 2063040Domain d4gnwb_: 4gnw B: [227916]
        automated match to d1sy3a_
        complexed with hem, nh3, po4; mutant
    3. Domains for 4grj:
      1. 2063041Domain d4grja_: 4grj A: [234495]
        automated match to d4gnwa_
        complexed with hem, no, po4; mutant
      2. 2063042Domain d4grjb_: 4grj B: [234494]
        automated match to d4gnwa_
        complexed with hem, no, po4; mutant
  13. 2063043Sheep (Ovis aries) [TaxId:9940] [237679] (4 PDB entries)
    1. Domains for 4ck4:
      1. 2063044Domain d4ck4a_: 4ck4 A: [260152]
        automated match to d4nlja_
        complexed with act, cl, na, nh4, so4
      2. 2063045Domain d4ck4b_: 4ck4 B: [260151]
        automated match to d4nlja_
        complexed with act, cl, na, nh4, so4
    2. Domain for 4nli:
    3. Domains for 4nlj:
      1. 2063046Domain d4nlja_: 4nlj A: [237847]
        automated match to d4nlia_
        complexed with so4
      2. 2063047Domain d4nljb_: 4nlj B: [237846]
        automated match to d4nlia_
        complexed with so4
    4. Domains for 5eed:
      1. 2281123Domain d5eedb_: 5eed B: [324424]
        automated match to d4ck4b_
        complexed with de1
      2. 2281134Domain d5eeda_: 5eed A: [324435]
        automated match to d4ck4b_
        complexed with de1

More info for Protein automated matches from b.60.1.1: Retinol binding protein-like

Timeline for Protein automated matches from b.60.1.1: Retinol binding protein-like: