Lineage for Protein: automated matches

  1. Root: SCOPe 2.06
  2. 2078559Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
  3. 2122050Fold c.55: Ribonuclease H-like motif [53066] (7 superfamilies)
    3 layers: a/b/a; mixed beta-sheet of 5 strands, order 32145; strand 2 is antiparallel to the rest
  4. 2123751Superfamily c.55.3: Ribonuclease H-like [53098] (15 families) (S)
    consists of one domain of this fold
  5. 2124334Family c.55.3.5: DnaQ-like 3'-5' exonuclease [53118] (17 protein domains)
    contains Pfam PF00929
  6. 2124711Protein automated matches [190162] (5 species)
    not a true protein

Species:

  1. 2124712Coxiella burnetii [TaxId:777] [196134] (1 PDB entry)
  2. 2124715Escherichia coli K-12 [TaxId:83333] [225829] (2 PDB entries)
    1. Domains for 2is3:
      1. 2124718Domain d2is3a_: 2is3 A: [242171]
        automated match to d2f96a1
        complexed with so4
      2. 2124719Domain d2is3b_: 2is3 B: [242172]
        automated match to d2f96a1
        complexed with so4
      3. 2124720Domain d2is3c_: 2is3 C: [242173]
        automated match to d2f96a1
        complexed with so4
      4. 2124721Domain d2is3d_: 2is3 D: [242174]
        automated match to d2f96a1
        complexed with so4
    2. Domains for 3k5o:
      1. 2124716Domain d3k5oa1: 3k5o A:2-389 [212170]
        Other proteins in same PDB: d3k5oa2, d3k5ob2
        automated match to d1q8ia1
      2. 2124717Domain d3k5ob1: 3k5o B:2-389 [212172]
        Other proteins in same PDB: d3k5oa2, d3k5ob2
        automated match to d1q8ia1
  3. 2124722Escherichia coli [TaxId:562] [187263] (14 PDB entries)
    1. Domain for 2gui:
    2. Domains for 2ido:
      1. 2124726Domain d2idoa_: 2ido A: [137284]
        Other proteins in same PDB: d2idob_, d2idod_
        automated match to d1j53a_
        complexed with edo, mn, tmp
      2. 2124727Domain d2idoc_: 2ido C: [137286]
        Other proteins in same PDB: d2idob_, d2idod_
        automated match to d1j53a_
        complexed with edo, mn, tmp
    3. Domain for 2xy8:
    4. Domain for 3c94:
    5. Domain for 3c95:
    6. Domain for 3k5l:
    7. Domain for 3k5m:
    8. Domains for 3k5n:
      1. 2124747Domain d3k5na1: 3k5n A:1-389 [247113]
        Other proteins in same PDB: d3k5na2, d3k5nb2, d3k5nb3
        automated match to d1q8ia1
        protein/DNA complex
      2. 2124748Domain d3k5nb1: 3k5n B:1-389 [247115]
        Other proteins in same PDB: d3k5na2, d3k5nb2, d3k5nb3
        automated match to d1q8ia1
        protein/DNA complex
    9. Domains for 3ngy:
      1. 2124728Domain d3ngya_: 3ngy A: [247917]
        automated match to d2f96a1
        complexed with co; mutant
      2. 2124729Domain d3ngyb_: 3ngy B: [247918]
        automated match to d2f96a1
        complexed with co; mutant
      3. 2124730Domain d3ngyc_: 3ngy C: [247919]
        automated match to d2f96a1
        complexed with co; mutant
      4. 2124731Domain d3ngyd_: 3ngy D: [247920]
        automated match to d2f96a1
        complexed with co; mutant
    10. Domains for 3ngz:
      1. 2124737Domain d3ngza_: 3ngz A: [247921]
        automated match to d2f96a1
        protein/DNA complex; protein/RNA complex; complexed with co, mg
      2. 2124738Domain d3ngzb_: 3ngz B: [247922]
        automated match to d2f96a1
        protein/DNA complex; protein/RNA complex; complexed with co, mg
    11. Domains for 3nh0:
      1. 2124743Domain d3nh0a_: 3nh0 A: [247923]
        automated match to d2f96a1
        protein/DNA complex; protein/RNA complex
      2. 2124744Domain d3nh0b_: 3nh0 B: [247924]
        automated match to d2f96a1
        protein/DNA complex; protein/RNA complex
    12. Domains for 3nh1:
      1. 2124733Domain d3nh1a_: 3nh1 A: [247925]
        automated match to d2f96a1
        protein/DNA complex; protein/RNA complex; complexed with mg
      2. 2124734Domain d3nh1b_: 3nh1 B: [247926]
        automated match to d2f96a1
        protein/DNA complex; protein/RNA complex; complexed with mg
      3. 2124735Domain d3nh1c_: 3nh1 C: [247927]
        automated match to d2f96a1
        protein/DNA complex; protein/RNA complex; complexed with mg
      4. 2124736Domain d3nh1d_: 3nh1 D: [247928]
        automated match to d2f96a1
        protein/DNA complex; protein/RNA complex; complexed with mg
    13. Domains for 3nh2:
      1. 2124739Domain d3nh2a_: 3nh2 A: [247929]
        automated match to d2f96a1
        protein/DNA complex; protein/RNA complex
      2. 2124740Domain d3nh2b_: 3nh2 B: [247930]
        automated match to d2f96a1
        protein/DNA complex; protein/RNA complex
      3. 2124741Domain d3nh2e_: 3nh2 E: [247931]
        automated match to d2f96a1
        protein/DNA complex; protein/RNA complex
      4. 2124742Domain d3nh2f_: 3nh2 F: [247932]
        automated match to d2f96a1
        protein/DNA complex; protein/RNA complex
    14. Domain for 4kb1:
  4. 2124750Escherichia coli [TaxId:83333] [267960] (3 PDB entries)
    1. Domain for 4kaz:
    2. Domains for 4kb0:
      1. 2124753Domain d4kb0a_: 4kb0 A: [266541]
        automated match to d3nh1a_
        protein/DNA complex; complexed with mg
      2. 2124754Domain d4kb0b_: 4kb0 B: [266542]
        automated match to d3nh1a_
        protein/DNA complex; complexed with mg
    3. Domain for 4kb1:
  5. 2124755Thermococcus gorgonarius [TaxId:71997] [225933] (3 PDB entries)
    1. Domain for 2vwj:
    2. Domain for 2vwk:
    3. Domain for 2xhb:

More info for Protein automated matches from c.55.3.5: DnaQ-like 3'-5' exonuclease

Timeline for Protein automated matches from c.55.3.5: DnaQ-like 3'-5' exonuclease: