Lineage for Protein: automated matches

  1. Root: SCOPe 2.01
  2. 1054197Class e: Multi-domain proteins (alpha and beta) [56572] (66 folds)
  3. 1054403Fold e.3: beta-lactamase/transpeptidase-like [56600] (1 superfamily)
    contains a cluster of helices and an alpha+beta sandwich
  4. 1054404Superfamily e.3.1: beta-lactamase/transpeptidase-like [56601] (4 families) (S)
  5. 1054405Family e.3.1.1: beta-Lactamase/D-ala carboxypeptidase [56602] (19 proteins)
  6. 1054945Protein automated matches [190161] (13 species)
    not a true protein

Species:

  1. 1054946Bacillus licheniformis [TaxId:1402] [188244] (4 PDB entries)
    1. Domains for 2wk0:
      1. 1054947Domain d2wk0a_: 2wk0 A: [169392]
        automated match to d1i2wb_
        complexed with biy, cit, cl, eoh, so4
      2. 1054948Domain d2wk0b_: 2wk0 B: [169393]
        automated match to d1i2wb_
        complexed with biy, cit, cl, eoh, so4
    2. Domains for 2x71:
      1. 1054949Domain d2x71a_: 2x71 A: [169913]
        automated match to d1i2wb_
        complexed with eoh, l4c, so4
      2. 1054950Domain d2x71b_: 2x71 B: [169914]
        automated match to d1i2wb_
        complexed with eoh, l4c, so4
    3. Domains for 3b3x:
      1. 1054953Domain d3b3xa_: 3b3x A: [172422]
        automated match to d1i2wb_
        complexed with a33
      2. 1054954Domain d3b3xb_: 3b3x B: [172423]
        automated match to d1i2wb_
        complexed with a33
    4. Domains for 3soi:
      1. 1054951Domain d3soia_: 3soi A: [185472]
        automated match to d2blma_
        complexed with cit
      2. 1054952Domain d3soib_: 3soi B: [185473]
        automated match to d2blma_
        complexed with cit
  2. 1054955Citrobacter sedlakii [TaxId:67826] [188289] (3 PDB entries)
    1. Domains for 3bfd:
      1. 1054957Domain d3bfda_: 3bfd A: [172582]
        automated match to d1iyoa_
        complexed with cac; mutant
      2. 1054958Domain d3bfdb_: 3bfd B: [172583]
        automated match to d1iyoa_
        complexed with cac; mutant
      3. 1054959Domain d3bfdc_: 3bfd C: [172584]
        automated match to d1iyoa_
        complexed with cac; mutant
      4. 1054960Domain d3bfdd_: 3bfd D: [172585]
        automated match to d1iyoa_
        complexed with cac; mutant
    2. Domains for 3bfe:
      1. 1054961Domain d3bfea_: 3bfe A: [172586]
        automated match to d1iyoa_
        complexed with scn
      2. 1054962Domain d3bfeb_: 3bfe B: [172587]
        automated match to d1iyoa_
        complexed with scn
      3. 1054963Domain d3bfec_: 3bfe C: [172588]
        automated match to d1iyoa_
        complexed with scn
      4. 1054964Domain d3bfed_: 3bfe D: [172589]
        automated match to d1iyoa_
        complexed with scn
    3. Domain for 3bff:
  3. 1054965Enterobacter cloacae [TaxId:550] [187307] (3 PDB entries)
    1. Domain for 1y54:
    2. Domain for 2q9m:
    3. Domain for 2q9n:
  4. 1054969Escherichia coli [TaxId:469008] [188520] (1 PDB entry)
  5. 1054971Escherichia coli [TaxId:562] [187306] (27 PDB entries)
    1. Domain for 1ylj:
    2. Domain for 1ylp:
    3. Domain for 1ylt:
    4. Domain for 1ylw:
    5. Domains for 1yly:
      1. 1054979Domain d1ylya_: 1yly A: [162244]
        automated match to d1iysa_
        complexed with cb4, po4
      2. 1054980Domain d1ylyb_: 1yly B: [162245]
        automated match to d1iysa_
        complexed with cb4, po4
    6. Domains for 1ylz:
      1. 1054983Domain d1ylza_: 1ylz A: [162246]
        automated match to d1iysa_
        complexed with cb4, po4
      2. 1054984Domain d1ylzb_: 1ylz B: [162247]
        automated match to d1iysa_
        complexed with cb4, po4
    7. Domains for 1ym1:
      1. 1054975Domain d1ym1a_: 1ym1 A: [162249]
        automated match to d1iysa_
        complexed with po4, sm2
      2. 1054976Domain d1ym1b_: 1ym1 B: [162250]
        automated match to d1iysa_
        complexed with po4, sm2
    8. Domains for 1yms:
      1. 1055001Domain d1ymsa_: 1yms A: [162255]
        automated match to d1iysa_
        complexed with nbf
      2. 1055002Domain d1ymsb_: 1yms B: [162256]
        automated match to d1iysa_
        complexed with nbf
    9. Domains for 1ymx:
      1. 1055003Domain d1ymxa_: 1ymx A: [162258]
        automated match to d1iysa_
        complexed with cfx
      2. 1055004Domain d1ymxb_: 1ymx B: [162259]
        automated match to d1iysa_
        complexed with cfx
    10. Domains for 2p74:
      1. 1054972Domain d2p74a_: 2p74 A: [167042]
        automated match to d1iyqa_
        complexed with k, po4
      2. 1054973Domain d2p74b_: 2p74 B: [167043]
        automated match to d1iyqa_
        complexed with k, po4
    11. Domains for 2zj9:
      1. 1055005Domain d2zj9a_: 2zj9 A: [171241]
        automated match to d1c3ba_
        complexed with ipa, na
      2. 1055006Domain d2zj9b_: 2zj9 B: [171242]
        automated match to d1c3ba_
        complexed with ipa, na
    12. Domains for 3c7u:
      1. 1055017Domain d3c7ua_: 3c7u A: [156017]
        Other proteins in same PDB: d3c7ub_, d3c7ud_
        automated match to d1axba_
      2. 1055018Domain d3c7uc_: 3c7u C: [156018]
        Other proteins in same PDB: d3c7ub_, d3c7ud_
        automated match to d1axba_
    13. Domains for 3c7v:
      1. 1055015Domain d3c7va_: 3c7v A: [156019]
        Other proteins in same PDB: d3c7vb_, d3c7vd_
        automated match to d1axba_
      2. 1055016Domain d3c7vc_: 3c7v C: [156020]
        Other proteins in same PDB: d3c7vb_, d3c7vd_
        automated match to d1axba_
    14. Domains for 3g2y:
      1. 1054985Domain d3g2ya_: 3g2y A: [176314]
        automated match to d1iyqa_
        complexed with dms, gf4
      2. 1054986Domain d3g2yb_: 3g2y B: [176315]
        automated match to d1iyqa_
        complexed with dms, gf4
    15. Domains for 3g2z:
      1. 1054997Domain d3g2za_: 3g2z A: [176316]
        automated match to d1iysa_
        complexed with dms, gz2
      2. 1054998Domain d3g2zb_: 3g2z B: [176317]
        automated match to d1iysa_
        complexed with dms, gz2
    16. Domain for 3g30:
    17. Domains for 3g31:
      1. 1055007Domain d3g31a_: 3g31 A: [176319]
        automated match to d1iysa_
        complexed with dms, gf1, po4
      2. 1055008Domain d3g31b_: 3g31 B: [176320]
        automated match to d1iysa_
        complexed with dms, gf1, po4
    18. Domains for 3g32:
      1. 1054981Domain d3g32a_: 3g32 A: [176321]
        automated match to d1iysa_
        complexed with 3g3, dms, po4
      2. 1054982Domain d3g32b_: 3g32 B: [176322]
        automated match to d1iysa_
        complexed with 3g3, dms, po4
    19. Domains for 3g34:
      1. 1054987Domain d3g34a_: 3g34 A: [176323]
        automated match to d1iysa_
        complexed with 1ce, dms, po4
      2. 1054988Domain d3g34b_: 3g34 B: [176324]
        automated match to d1iysa_
        complexed with 1ce, dms, po4
    20. Domains for 3g35:
      1. 1054989Domain d3g35a_: 3g35 A: [176325]
        automated match to d1iysa_
        complexed with dms, f13
      2. 1054990Domain d3g35b_: 3g35 B: [176326]
        automated match to d1iysa_
        complexed with dms, f13
    21. Domains for 3hlw:
      1. 1054999Domain d3hlwa_: 3hlw A: [177682]
        automated match to d1iysa_
        complexed with ce3
      2. 1055000Domain d3hlwb_: 3hlw B: [177683]
        automated match to d1iysa_
        complexed with ce3
    22. Domains for 3hre:
      1. 1054991Domain d3hrea_: 3hre A: [177794]
        automated match to d1iysa_
        complexed with po4
      2. 1054992Domain d3hreb_: 3hre B: [177795]
        automated match to d1iysa_
        complexed with po4
    23. Domains for 3huo:
      1. 1054995Domain d3huoa_: 3huo A: [177848]
        automated match to d1iysa_
        complexed with pnk, pnn
      2. 1054996Domain d3huob_: 3huo B: [177849]
        automated match to d1iysa_
        complexed with pnk, pnn
    24. Domains for 3hvf:
      1. 1054993Domain d3hvfa_: 3hvf A: [177864]
        automated match to d1iysa_
        complexed with pnk
      2. 1054994Domain d3hvfb_: 3hvf B: [177865]
        automated match to d1iysa_
        complexed with pnk
    25. Domains for 3jyi:
      1. 1055019Domain d3jyia_: 3jyi A: [178921]
        automated match to d1axba_
        complexed with epe, po4; mutant
      2. 1055020Domain d3jyib_: 3jyi B: [178922]
        automated match to d1axba_
        complexed with epe, po4; mutant
      3. 1055021Domain d3jyic_: 3jyi C: [178923]
        automated match to d1axba_
        complexed with epe, po4; mutant
      4. 1055022Domain d3jyid_: 3jyi D: [178924]
        automated match to d1axba_
        complexed with epe, po4; mutant
      5. 1055023Domain d3jyie_: 3jyi E: [178925]
        automated match to d1axba_
        complexed with epe, po4; mutant
      6. 1055024Domain d3jyif_: 3jyi F: [178926]
        automated match to d1axba_
        complexed with epe, po4; mutant
    26. Domains for 3q07:
      1. 1055012Domain d3q07a_: 3q07 A: [184106]
        automated match to d1iysa_
        complexed with wpp, ypp
      2. 1055013Domain d3q07b_: 3q07 B: [184107]
        automated match to d1iysa_
        complexed with wpp, ypp
    27. Domains for 3q1f:
      1. 1055010Domain d3q1fa_: 3q1f A: [184153]
        automated match to d1iysa_
        complexed with ypp
      2. 1055011Domain d3q1fb_: 3q1f B: [184154]
        automated match to d1iysa_
        complexed with ypp
  6. 1055025Escherichia coli [TaxId:668369] [189787] (1 PDB entry)
  7. 1055030Escherichia sp. [TaxId:299586] [188841] (1 PDB entry)
  8. 1055033Klebsiella oxytoca [TaxId:571] [188743] (1 PDB entry)
  9. 1055035Klebsiella pneumoniae [TaxId:573] [188184] (2 PDB entries)
    1. Domains for 1zc2:
      1. 1055036Domain d1zc2a_: 1zc2 A: [162440]
        automated match to d1fr1a_
        complexed with cit
      2. 1055037Domain d1zc2b_: 1zc2 B: [162441]
        automated match to d1fr1a_
        complexed with cit
    2. Domains for 2zc7:
      1. 1055038Domain d2zc7a_: 2zc7 A: [171151]
        automated match to d1blsa_
      2. 1055039Domain d2zc7b_: 2zc7 B: [171152]
        automated match to d1blsa_
      3. 1055040Domain d2zc7c_: 2zc7 C: [171153]
        automated match to d1blsa_
      4. 1055041Domain d2zc7d_: 2zc7 D: [171154]
        automated match to d1blsa_
  10. 1055042Oceanobacillus iheyensis [TaxId:182710] [189232] (1 PDB entry)
  11. 1055044Pneumococcus (Streptococcus pneumoniae) [TaxId:1313] [188417] (2 PDB entries)
    1. Domain for 2v2f:
    2. Domains for 2zc6:
      1. 1055046Domain d2zc6b_: 2zc6 B: [171149]
        automated match to d2c5wb1
        complexed with teb, zn
      2. 1055047Domain d2zc6d_: 2zc6 D: [171150]
        automated match to d2c5wb1
        complexed with teb, zn
  12. 1055048Staphylococcus aureus [TaxId:1280] [189852] (2 PDB entries)
    1. Domains for 3q7v:
      1. 1055051Domain d3q7va_: 3q7v A: [184266]
        automated match to d1xa1c_
        complexed with gol, so4
      2. 1055052Domain d3q7vb_: 3q7v B: [184267]
        automated match to d1xa1c_
        complexed with gol, so4
    2. Domains for 3q7z:
      1. 1055049Domain d3q7za_: 3q7z A: [184268]
        automated match to d1xa1c_
        complexed with bou
      2. 1055050Domain d3q7zb_: 3q7z B: [184269]
        automated match to d1xa1c_
        complexed with bou
  13. 1055053Streptomyces sp. [TaxId:31952] [186885] (1 PDB entry)

More info for Protein automated matches from e.3.1.1: beta-Lactamase/D-ala carboxypeptidase

Timeline for Protein automated matches from e.3.1.1: beta-Lactamase/D-ala carboxypeptidase:

  • Protein automated matches from e.3.1.1: beta-Lactamase/D-ala carboxypeptidase is new in SCOPe 2.01-stable
  • Protein automated matches from e.3.1.1: beta-Lactamase/D-ala carboxypeptidase appears in SCOPe 2.02
  • Protein automated matches from e.3.1.1: beta-Lactamase/D-ala carboxypeptidase appears in the current release, SCOPe 2.08