Lineage for Protein: automated matches

  1. Root: SCOPe 2.06
  2. 2089713Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
  3. 2114715Fold c.23: Flavodoxin-like [52171] (15 superfamilies)
    3 layers, a/b/a; parallel beta-sheet of 5 strand, order 21345
  4. 2115525Superfamily c.23.5: Flavoproteins [52218] (9 families) (S)
  5. 2116045Family c.23.5.0: automated matches [191330] (1 protein)
    not a true family
  6. 2116046Protein automated matches [190158] (24 species)
    not a true protein

Species:

  1. 2116047Agrobacterium tumefaciens [TaxId:176299] [225483] (1 PDB entry)
  2. 2116049Azotobacter vinelandii [TaxId:354] [186881] (1 PDB entry)
  3. 2116051Baker's yeast (Saccharomyces cerevisiae) [TaxId:4932] [255831] (1 PDB entry)
  4. 2116053Brucella abortus [TaxId:359391] [313909] (2 PDB entries)
    1. Domains for 5f4b:
      1. 2116054Domain d5f4ba_: 5f4b A: [314043]
        automated match to d2rg1b_
        complexed with cl, fmn
      2. 2116055Domain d5f4bb_: 5f4b B: [314115]
        automated match to d2rg1b_
        complexed with cl, fmn
    2. Domain for 5f51:
  5. 2116057Citrobacter braakii [TaxId:57706] [257348] (1 PDB entry)
  6. 2116059Desulfovibrio desulfuricans [TaxId:525146] [189135] (2 PDB entries)
    1. Domain for 3kap:
    2. Domain for 3kaq:
  7. 2116062Desulfovibrio desulfuricans [TaxId:876] [188896] (3 PDB entries)
    1. Domains for 3f6r:
      1. 2116063Domain d3f6ra_: 3f6r A: [175514]
        automated match to d1j9ea_
        complexed with fmn
      2. 2116064Domain d3f6rb_: 3f6r B: [175515]
        automated match to d1j9ea_
        complexed with fmn
      3. 2116065Domain d3f6rc_: 3f6r C: [175516]
        automated match to d1j9ea_
        complexed with fmn
      4. 2116066Domain d3f6rd_: 3f6r D: [175517]
        automated match to d1j9ea_
        complexed with fmn
    2. Domains for 3f6s:
      1. 2116067Domain d3f6sa_: 3f6s A: [175518]
        automated match to d1j9ea_
        complexed with fmn
      2. 2116068Domain d3f6sb_: 3f6s B: [175519]
        automated match to d1j9ea_
        complexed with fmn
      3. 2116069Domain d3f6sd_: 3f6s D: [175520]
        automated match to d1j9ea_
        complexed with fmn
      4. 2116070Domain d3f6se_: 3f6s E: [175521]
        automated match to d1j9ea_
        complexed with fmn
      5. 2116071Domain d3f6sf_: 3f6s F: [175522]
        automated match to d1j9ea_
        complexed with fmn
      6. 2116072Domain d3f6sg_: 3f6s G: [175523]
        automated match to d1j9ea_
        complexed with fmn
      7. 2116073Domain d3f6sh_: 3f6s H: [175524]
        automated match to d1j9ea_
        complexed with fmn
      8. 2116074Domain d3f6si_: 3f6s I: [175525]
        automated match to d1j9ea_
        complexed with fmn
    3. Domains for 3f90:
      1. 2116075Domain d3f90a_: 3f90 A: [175579]
        automated match to d1j9ea_
        complexed with fmn
      2. 2116076Domain d3f90b_: 3f90 B: [175580]
        automated match to d1j9ea_
        complexed with fmn
      3. 2116077Domain d3f90d_: 3f90 D: [175581]
        automated match to d1j9ea_
        complexed with fmn
      4. 2116078Domain d3f90e_: 3f90 E: [175582]
        automated match to d1j9ea_
        complexed with fmn
      5. 2116079Domain d3f90f_: 3f90 F: [175583]
        automated match to d1j9ea_
        complexed with fmn
      6. 2116080Domain d3f90g_: 3f90 G: [175584]
        automated match to d1j9ea_
        complexed with fmn
      7. 2116081Domain d3f90h_: 3f90 H: [175585]
        automated match to d1j9ea_
        complexed with fmn
      8. 2116082Domain d3f90i_: 3f90 I: [175586]
        automated match to d1j9ea_
        complexed with fmn
  8. 2116083Escherichia coli K-12 [TaxId:83333] [188285] (5 PDB entries)
    1. Domains for 3b6i:
      1. 2116084Domain d3b6ia_: 3b6i A: [172434]
        automated match to d1zwka1
        complexed with 15p, fmn
      2. 2116085Domain d3b6ib_: 3b6i B: [172435]
        automated match to d1zwka1
        complexed with 15p, fmn
    2. Domains for 3b6j:
      1. 2116088Domain d3b6ja_: 3b6j A: [172436]
        automated match to d1zwka1
        complexed with 15p, amp, fmn, nad
      2. 2116089Domain d3b6jb_: 3b6j B: [172437]
        automated match to d1zwka1
        complexed with 15p, amp, fmn, nad
    3. Domains for 3b6k:
      1. 2116090Domain d3b6ka_: 3b6k A: [172438]
        automated match to d1zwka1
        complexed with 15p, fmn, plq
      2. 2116091Domain d3b6kb_: 3b6k B: [172439]
        automated match to d1zwka1
        complexed with 15p, fmn, plq
    4. Domains for 3b6m:
      1. 2116086Domain d3b6ma_: 3b6m A: [172440]
        automated match to d1zwka1
        complexed with 144, 15p, fmn
      2. 2116087Domain d3b6mb_: 3b6m B: [172441]
        automated match to d1zwka1
        complexed with 144, 15p, fmn
    5. Domains for 3svl:
      1. 2116092Domain d3svla_: 3svl A: [233645]
        automated match to d3u7ra_
        complexed with ca, fmn
      2. 2116093Domain d3svlb_: 3svl B: [239781]
        automated match to d3svla_
        complexed with ca, fmn
  9. 2116094Escherichia coli [TaxId:469008] [267794] (2 PDB entries)
    1. Domain for 2m6r:
    2. Domain for 2m6s:
  10. 2116097Escherichia coli [TaxId:562] [255218] (2 PDB entries)
    1. Domain for 2hna:
    2. Domain for 2hnb:
  11. 2116100Escherichia coli [TaxId:83333] [259351] (4 PDB entries)
    1. Domain for 2mt9:
    2. Domain for 2mtb:
    3. Domain for 4d02:
    4. Domain for 5lld:
  12. 2116105Human (Homo sapiens) [TaxId:9606] [226640] (6 PDB entries)
    1. Domains for 3qe2:
      1. 2116106Domain d3qe2a1: 3qe2 A:69-239 [248857]
        Other proteins in same PDB: d3qe2a2, d3qe2a3, d3qe2b2, d3qe2b3
        automated match to d1ja1a2
        complexed with ca, fad, fmn, nap
      2. 2116107Domain d3qe2b1: 3qe2 B:69-239 [248860]
        Other proteins in same PDB: d3qe2a2, d3qe2a3, d3qe2b2, d3qe2b3
        automated match to d1ja1a2
        complexed with ca, fad, fmn, nap
    2. Domains for 3qfc:
      1. 2116110Domain d3qfca1: 3qfc A:69-242 [248869]
        Other proteins in same PDB: d3qfca2, d3qfca3, d3qfcb2, d3qfcb3
        automated match to d1ja1a2
        complexed with ca, fad, fmn, nap; mutant
      2. 2116111Domain d3qfcb1: 3qfc B:70-241 [248872]
        Other proteins in same PDB: d3qfca2, d3qfca3, d3qfcb2, d3qfcb3
        automated match to d1ja1a2
        complexed with ca, fad, fmn, nap; mutant
    3. Domains for 3qfr:
      1. 2116112Domain d3qfra1: 3qfr A:70-242 [248875]
        Other proteins in same PDB: d3qfra2, d3qfra3, d3qfrb2, d3qfrb3
        automated match to d1ja1a2
        complexed with ca, fad, fmn, nap; mutant
      2. 2116113Domain d3qfrb1: 3qfr B:70-240 [248878]
        Other proteins in same PDB: d3qfra2, d3qfra3, d3qfrb2, d3qfrb3
        automated match to d1ja1a2
        complexed with ca, fad, fmn, nap; mutant
    4. Domains for 4h2d:
      1. 2116108Domain d4h2da_: 4h2d A: [222332]
        automated match to d1bvyf_
        complexed with fmn
      2. 2116109Domain d4h2db_: 4h2d B: [222333]
        automated match to d1bvyf_
        complexed with fmn
    5. Domains for 5emn:
      1. 2116114Domain d5emna1: 5emn A:70-240 [321263]
        Other proteins in same PDB: d5emna2, d5emna3, d5emnb2, d5emnb3
        automated match to d1ja1a2
        complexed with fad, fmn, nap; mutant
      2. 2116115Domain d5emnb1: 5emn B:70-238 [321250]
        Other proteins in same PDB: d5emna2, d5emna3, d5emnb2, d5emnb3
        automated match to d1ja1a2
        complexed with fad, fmn, nap; mutant
    6. Domains for 5fa6:
      1. 2116116Domain d5fa6a1: 5fa6 A:70-242 [321266]
        Other proteins in same PDB: d5fa6a2, d5fa6a3, d5fa6b2, d5fa6b3
        automated match to d1ja1a2
        complexed with fad, fmn, nap
      2. 2116117Domain d5fa6b1: 5fa6 B:70-239 [321290]
        Other proteins in same PDB: d5fa6a2, d5fa6a3, d5fa6b2, d5fa6b3
        automated match to d1ja1a2
        complexed with fad, fmn, nap
  13. 2116118Methanothermobacter thermautotrophicus [TaxId:145262] [231062] (3 PDB entries)
    1. Domains for 2ohh:
      1. 2116119Domain d2ohha2: 2ohh A:255-403 [231070]
        Other proteins in same PDB: d2ohha1, d2ohhb1, d2ohhd1, d2ohhe1
        automated match to d1ycfa1
        complexed with fe, fmn, so4
      2. 2116120Domain d2ohhb2: 2ohh B:255-403 [231072]
        Other proteins in same PDB: d2ohha1, d2ohhb1, d2ohhd1, d2ohhe1
        automated match to d1ycfa1
        complexed with fe, fmn, so4
      3. 2116121Domain d2ohhe2: 2ohh E:255-403 [231075]
        Other proteins in same PDB: d2ohha1, d2ohhb1, d2ohhd1, d2ohhe1
        automated match to d1ycfa1
        complexed with fe, fmn, so4
    2. Domains for 2ohi:
      1. 2116126Domain d2ohia2: 2ohi A:255-403 [231074]
        Other proteins in same PDB: d2ohia1, d2ohib1, d2ohid1, d2ohie1, d2ohig1, d2ohih1, d2ohii1, d2ohij1
        automated match to d1ycfa1
        complexed with cl, fe, fmn
      2. 2116127Domain d2ohib2: 2ohi B:255-403 [231073]
        Other proteins in same PDB: d2ohia1, d2ohib1, d2ohid1, d2ohie1, d2ohig1, d2ohih1, d2ohii1, d2ohij1
        automated match to d1ycfa1
        complexed with cl, fe, fmn
      3. 2116128Domain d2ohid2: 2ohi D:255-403 [231071]
        Other proteins in same PDB: d2ohia1, d2ohib1, d2ohid1, d2ohie1, d2ohig1, d2ohih1, d2ohii1, d2ohij1
        automated match to d1ycfa1
        complexed with cl, fe, fmn
      4. 2116129Domain d2ohie2: 2ohi E:255-403 [231082]
        Other proteins in same PDB: d2ohia1, d2ohib1, d2ohid1, d2ohie1, d2ohig1, d2ohih1, d2ohii1, d2ohij1
        automated match to d1ycfa1
        complexed with cl, fe, fmn
      5. 2116130Domain d2ohig2: 2ohi G:255-403 [231076]
        Other proteins in same PDB: d2ohia1, d2ohib1, d2ohid1, d2ohie1, d2ohig1, d2ohih1, d2ohii1, d2ohij1
        automated match to d1ycfa1
        complexed with cl, fe, fmn
      6. 2116131Domain d2ohih2: 2ohi H:255-403 [231080]
        Other proteins in same PDB: d2ohia1, d2ohib1, d2ohid1, d2ohie1, d2ohig1, d2ohih1, d2ohii1, d2ohij1
        automated match to d1ycfa1
        complexed with cl, fe, fmn
      7. 2116132Domain d2ohii2: 2ohi I:255-403 [231083]
        Other proteins in same PDB: d2ohia1, d2ohib1, d2ohid1, d2ohie1, d2ohig1, d2ohih1, d2ohii1, d2ohij1
        automated match to d1ycfa1
        complexed with cl, fe, fmn
      8. 2116133Domain d2ohij2: 2ohi J:255-403 [231077]
        Other proteins in same PDB: d2ohia1, d2ohib1, d2ohid1, d2ohie1, d2ohig1, d2ohih1, d2ohii1, d2ohij1
        automated match to d1ycfa1
        complexed with cl, fe, fmn
    3. Domains for 2ohj:
      1. 2116122Domain d2ohja2: 2ohj A:255-403 [231085]
        Other proteins in same PDB: d2ohja1, d2ohjb1, d2ohjd1, d2ohje1
        automated match to d1ycfa1
        complexed with cl, fe, fmn
      2. 2116123Domain d2ohjb2: 2ohj B:255-403 [231078]
        Other proteins in same PDB: d2ohja1, d2ohjb1, d2ohjd1, d2ohje1
        automated match to d1ycfa1
        complexed with cl, fe, fmn
      3. 2116124Domain d2ohjd2: 2ohj D:255-403 [231087]
        Other proteins in same PDB: d2ohja1, d2ohjb1, d2ohjd1, d2ohje1
        automated match to d1ycfa1
        complexed with cl, fe, fmn
      4. 2116125Domain d2ohje2: 2ohj E:255-403 [231079]
        Other proteins in same PDB: d2ohja1, d2ohjb1, d2ohjd1, d2ohje1
        automated match to d1ycfa1
        complexed with cl, fe, fmn
  14. Moorella thermoacetica [TaxId:1525] [254979] (1 PDB entry)
  15. 2116138Norway rat (Rattus norvegicus) [TaxId:10116] [255999] (10 PDB entries)
    1. Domain for 3ojw:
    2. Domain for 3ojx:
    3. Domains for 4y7c:
      1. 2116151Domain d4y7ca1: 4y7c A:62-239 [311889]
        Other proteins in same PDB: d4y7ca2, d4y7ca3, d4y7cb2, d4y7cb3
        automated match to d1ja1a2
        complexed with fad, fmn, nap, po4; mutant
      2. 2116152Domain d4y7cb1: 4y7c B:64-236 [314282]
        Other proteins in same PDB: d4y7ca2, d4y7ca3, d4y7cb2, d4y7cb3
        automated match to d1ja1a2
        complexed with fad, fmn, nap, po4; mutant
    4. Domains for 4y9r:
      1. 2116153Domain d4y9ra1: 4y9r A:62-236 [311884]
        Other proteins in same PDB: d4y9ra2, d4y9ra3, d4y9rb2, d4y9rb3
        automated match to d1ja1a2
        complexed with fad, fmn, nap, po4; mutant
      2. 2116154Domain d4y9rb1: 4y9r B:63-236 [313922]
        Other proteins in same PDB: d4y9ra2, d4y9ra3, d4y9rb2, d4y9rb3
        automated match to d1ja1a2
        complexed with fad, fmn, nap, po4; mutant
    5. Domains for 4y9u:
      1. 2116144Domain d4y9ua1: 4y9u A:62-239 [313928]
        Other proteins in same PDB: d4y9ua2, d4y9ua3, d4y9ub2, d4y9ub3
        automated match to d1ja1a2
        complexed with fad, fmn, nap, po4; mutant
      2. 2116145Domain d4y9ub1: 4y9u B:63-235 [312480]
        Other proteins in same PDB: d4y9ua2, d4y9ua3, d4y9ub2, d4y9ub3
        automated match to d1ja1a2
        complexed with fad, fmn, nap, po4; mutant
    6. Domains for 4yaf:
      1. 2116142Domain d4yafa1: 4yaf A:61-235 [312247]
        Other proteins in same PDB: d4yafa2, d4yafa3, d4yafb2, d4yafb3
        automated match to d1ja1a2
        complexed with 2am, fad, fmn, po4
      2. 2116143Domain d4yafb1: 4yaf B:65-235 [312438]
        Other proteins in same PDB: d4yafa2, d4yafa3, d4yafb2, d4yafb3
        automated match to d1ja1a2
        complexed with 2am, fad, fmn, po4
    7. Domains for 4yal:
      1. 2116140Domain d4yala1: 4yal A:62-235 [314371]
        Other proteins in same PDB: d4yala2, d4yala3, d4yalb2, d4yalb3
        automated match to d1ja1a2
        complexed with 2am, fad, fmn, po4
      2. 2116141Domain d4yalb1: 4yal B:62-236 [311901]
        Other proteins in same PDB: d4yala2, d4yala3, d4yalb2, d4yalb3
        automated match to d1ja1a2
        complexed with 2am, fad, fmn, po4
    8. Domains for 4yao:
      1. 2116155Domain d4yaoa1: 4yao A:62-235 [311993]
        Other proteins in same PDB: d4yaoa2, d4yaoa3, d4yaob2, d4yaob3
        automated match to d1ja1a2
        complexed with 2am, fad, fmn, po4; mutant
      2. 2116156Domain d4yaob1: 4yao B:67-235 [312089]
        Other proteins in same PDB: d4yaoa2, d4yaoa3, d4yaob2, d4yaob3
        automated match to d1ja1a2
        complexed with 2am, fad, fmn, po4; mutant
    9. Domains for 4yau:
      1. 2116149Domain d4yaua1: 4yau A:62-236 [311945]
        Other proteins in same PDB: d4yaua2, d4yaua3, d4yaub2, d4yaub3
        automated match to d1ja1a2
        complexed with 2am, fad, fmn, po4; mutant
      2. 2116150Domain d4yaub1: 4yau B:67-236 [311969]
        Other proteins in same PDB: d4yaua2, d4yaua3, d4yaub2, d4yaub3
        automated match to d1ja1a2
        complexed with 2am, fad, fmn, po4; mutant
    10. Domains for 4yaw:
      1. 2116147Domain d4yawa1: 4yaw A:59-236 [313961]
        Other proteins in same PDB: d4yawa2, d4yawa3, d4yawb2, d4yawb3
        automated match to d1ja1a2
        complexed with 2am, fad, fmn, po4; mutant
      2. 2116148Domain d4yawb1: 4yaw B:67-235 [311936]
        Other proteins in same PDB: d4yawa2, d4yawa3, d4yawb2, d4yawb3
        automated match to d1ja1a2
        complexed with 2am, fad, fmn, po4; mutant
  16. 2116157Paracoccus denitrificans [TaxId:318586] [226510] (1 PDB entry)
  17. 2116160Pseudomonas aeruginosa [TaxId:208964] [330632] (2 PDB entries)
    1. Domain for 5b3k:
    2. Domain for 5b3l:
  18. 2116163Pseudomonas sp. [TaxId:165468] [256995] (2 PDB entries)
    1. Domains for 4la4:
      1. 2116168Domain d4la4a_: 4la4 A: [256996]
        automated match to d1ydga_
      2. 2116169Domain d4la4b_: 4la4 B: [262917]
        automated match to d4la4a_
    2. Domains for 4laf:
      1. 2116164Domain d4lafa_: 4laf A: [266650]
        automated match to d4la4a_
        complexed with fmn
      2. 2116165Domain d4lafb_: 4laf B: [266651]
        automated match to d4la4a_
        complexed with fmn
      3. 2116166Domain d4lafc_: 4laf C: [266652]
        automated match to d4la4a_
        complexed with fmn
      4. 2116167Domain d4lafd_: 4laf D: [266653]
        automated match to d4la4a_
        complexed with fmn
  19. 2116170Saccharomyces cerevisiae [TaxId:559292] [334502] (1 PDB entry)
  20. 2116179Streptococcus pneumoniae [TaxId:1313] [322000] (1 PDB entry)
  21. 2116182Streptococcus pneumoniae [TaxId:170187] [322082] (1 PDB entry)
  22. 2116184Sulfolobus tokodaii [TaxId:111955] [188428] (1 PDB entry)
  23. 2116193Thermotoga maritima [TaxId:2336] [226499] (2 PDB entries)
    1. Domains for 4dik:
      1. 2116194Domain d4dika2: 4dik A:251-398 [219780]
        Other proteins in same PDB: d4dika1, d4dika3, d4dikb1, d4dikb3
        automated match to d1vmea1
        complexed with cl, feo; mutant
      2. 2116195Domain d4dikb2: 4dik B:251-398 [219782]
        Other proteins in same PDB: d4dika1, d4dika3, d4dikb1, d4dikb3
        automated match to d1vmea1
        complexed with cl, feo; mutant
    2. Domains for 4dil:
      1. 2116196Domain d4dila2: 4dil A:251-398 [219784]
        Other proteins in same PDB: d4dila1, d4dilb1
        automated match to d1vmea1
        complexed with cl, feo; mutant
      2. 2116197Domain d4dilb2: 4dil B:251-398 [219786]
        Other proteins in same PDB: d4dila1, d4dilb1
        automated match to d1vmea1
        complexed with cl, feo; mutant
  24. 2116198Thermotoga maritima [TaxId:243274] [333312] (1 PDB entry)

More info for Protein automated matches from c.23.5.0: automated matches

Timeline for Protein automated matches from c.23.5.0: automated matches: