Species:

1. Agrobacterium tumefaciens [TaxId:176299] [225483] (1 PDB entry)

   • Domain for 3d7n:

     • Domain d3d7na_: 3d7n A: [209038] automated match to d2a5la1

2. Azotobacter vinelandii [TaxId:354] [186881] (1 PDB entry)

   • Domain for 1yob:

     • Domain d1yobb_: 1yob B: [123777] Other proteins in same PDB: d1yoba1 automated match to d1oboa_ complexed with fmn, so4

3. Baker's yeast (Saccharomyces cerevisiae) [TaxId:4932] [255831] (1 PDB entry)

   • Domain for 3fjo:

     • Domain d3fjoa1: 3fjo A:47-219 [246158] Other proteins in same PDB: d3fjoa2, d3fjoa3 automated match to d1ja1a2 complexed with fad, fmn

4. Citrobacter braakii [TaxId:57706] [257348] (1 PDB entry)

   • Domain for 4oxx:

     • Domain d4oxxa_: 4oxx A: [257349] automated match to d1ykga1 complexed with fmn; mutant

5. Desulfovibrio desulfuricans [TaxId:525146] [189135] (2 PDB entries)

   1. Domain for 3kap:

      • Domain d3kapa_: 3kap A: [179227] automated match to d1j9ea_ complexed with fmn

   2. Domain for 3kaq:

      • Domain d3kaqa_: 3kaq A: [179228] automated match to d1j9ea_ complexed with fmn

6. Desulfovibrio desulfuricans [TaxId:876] [188896] (3 PDB entries)

   1. Domains for 3f6r:

      1. Domain d3f6ra_: 3f6r A: [175514] automated match to d1j9ea_ complexed with fmn

      2. Domain d3f6rb_: 3f6r B: [175515] automated match to d1j9ea_ complexed with fmn

      3. Domain d3f6rc_: 3f6r C: [175516] automated match to d1j9ea_ complexed with fmn

      4. Domain d3f6rd_: 3f6r D: [175517] automated match to d1j9ea_ complexed with fmn

   2. Domains for 3f6s:

      1. Domain d3f6sa_: 3f6s A: [175518] automated match to d1j9ea_ complexed with fmn

      2. Domain d3f6sb_: 3f6s B: [175519] automated match to d1j9ea_ complexed with fmn

      3. Domain d3f6sd_: 3f6s D: [175520] automated match to d1j9ea_ complexed with fmn

      4. Domain d3f6se_: 3f6s E: [175521] automated match to d1j9ea_ complexed with fmn

      5. Domain d3f6sf_: 3f6s F: [175522] automated match to d1j9ea_ complexed with fmn

      6. Domain d3f6sg_: 3f6s G: [175523] automated match to d1j9ea_ complexed with fmn

      7. Domain d3f6sh_: 3f6s H: [175524] automated match to d1j9ea_ complexed with fmn

      8. Domain d3f6si_: 3f6s I: [175525] automated match to d1j9ea_ complexed with fmn

   3. Domains for 3f90:

      1. Domain d3f90a_: 3f90 A: [175579] automated match to d1j9ea_ complexed with fmn

      2. Domain d3f90b_: 3f90 B: [175580] automated match to d1j9ea_ complexed with fmn

      3. Domain d3f90d_: 3f90 D: [175581] automated match to d1j9ea_ complexed with fmn

      4. Domain d3f90e_: 3f90 E: [175582] automated match to d1j9ea_ complexed with fmn

      5. Domain d3f90f_: 3f90 F: [175583] automated match to d1j9ea_ complexed with fmn

      6. Domain d3f90g_: 3f90 G: [175584] automated match to d1j9ea_ complexed with fmn

      7. Domain d3f90h_: 3f90 H: [175585] automated match to d1j9ea_ complexed with fmn

      8. Domain d3f90i_: 3f90 I: [175586] automated match to d1j9ea_ complexed with fmn

7. Escherichia coli K-12 [TaxId:83333] [188285] (5 PDB entries)

   1. Domains for 3b6i:

      1. Domain d3b6ia_: 3b6i A: [172434] automated match to d1zwka1 complexed with 15p, fmn

      2. Domain d3b6ib_: 3b6i B: [172435] automated match to d1zwka1 complexed with 15p, fmn

   2. Domains for 3b6j:

      1. Domain d3b6ja_: 3b6j A: [172436] automated match to d1zwka1 complexed with 15p, amp, fmn, nad

      2. Domain d3b6jb_: 3b6j B: [172437] automated match to d1zwka1 complexed with 15p, amp, fmn, nad

   3. Domains for 3b6k:

      1. Domain d3b6ka_: 3b6k A: [172438] automated match to d1zwka1 complexed with 15p, fmn, plq

      2. Domain d3b6kb_: 3b6k B: [172439] automated match to d1zwka1 complexed with 15p, fmn, plq

   4. Domains for 3b6m:

      1. Domain d3b6ma_: 3b6m A: [172440] automated match to d1zwka1 complexed with 144, 15p, fmn

      2. Domain d3b6mb_: 3b6m B: [172441] automated match to d1zwka1 complexed with 144, 15p, fmn

   5. Domains for 3svl:

      1. Domain d3svla_: 3svl A: [233645] automated match to d3u7ra_ complexed with ca, fmn

      2. Domain d3svlb_: 3svl B: [239781] automated match to d3svla_ complexed with ca, fmn

8. Escherichia coli [TaxId:469008] [267794] (2 PDB entries)

   1. Domain for 2m6r:

      • Domain d2m6ra_: 2m6r A: [264382] automated match to d2hnba_

   2. Domain for 2m6s:

      • Domain d2m6sa_: 2m6s A: [264383] automated match to d2hnba_ complexed with fmn

9. Escherichia coli [TaxId:562] [255218] (2 PDB entries)

   1. Domain for 2hna:

      • Domain d2hnaa_: 2hna A: [242044] automated match to d1ykga1

   2. Domain for 2hnb:

      • Domain d2hnba_: 2hnb A: [242045] automated match to d1ykga1

10. Escherichia coli [TaxId:83333] [259351] (1 PDB entry)

    • Domain for 4d02:

      • Domain d4d02a2: 4d02 A:250-400 [259352] Other proteins in same PDB: d4d02a1 automated match to d1ycga1 complexed with cl, fe, fmn, gol, o, po4

11. Human (Homo sapiens) [TaxId:9606] [226640] (4 PDB entries)

    1. Domains for 3qe2:

       1. Domain d3qe2a1: 3qe2 A:69-239 [248857] Other proteins in same PDB: d3qe2a2, d3qe2a3, d3qe2b2, d3qe2b3 automated match to d1ja1a2 complexed with ca, fad, fmn, nap

       2. Domain d3qe2b1: 3qe2 B:69-239 [248860] Other proteins in same PDB: d3qe2a2, d3qe2a3, d3qe2b2, d3qe2b3 automated match to d1ja1a2 complexed with ca, fad, fmn, nap

    2. Domains for 3qfc:

       1. Domain d3qfca1: 3qfc A:69-242 [248869] Other proteins in same PDB: d3qfca2, d3qfca3, d3qfcb2, d3qfcb3 automated match to d1ja1a2 complexed with ca, fad, fmn, nap; mutant

       2. Domain d3qfcb1: 3qfc B:70-241 [248872] Other proteins in same PDB: d3qfca2, d3qfca3, d3qfcb2, d3qfcb3 automated match to d1ja1a2 complexed with ca, fad, fmn, nap; mutant

    3. Domains for 3qfr:

       1. Domain d3qfra1: 3qfr A:70-242 [248875] Other proteins in same PDB: d3qfra2, d3qfra3, d3qfrb2, d3qfrb3 automated match to d1ja1a2 complexed with ca, fad, fmn, nap; mutant

       2. Domain d3qfrb1: 3qfr B:70-240 [248878] Other proteins in same PDB: d3qfra2, d3qfra3, d3qfrb2, d3qfrb3 automated match to d1ja1a2 complexed with ca, fad, fmn, nap; mutant

    4. Domains for 4h2d:

       1. Domain d4h2da_: 4h2d A: [222332] automated match to d1bvyf_ complexed with fmn

       2. Domain d4h2db_: 4h2d B: [222333] automated match to d1bvyf_ complexed with fmn

12. Methanothermobacter thermautotrophicus [TaxId:145262] [231062] (3 PDB entries)

    1. Domains for 2ohh:

       1. Domain d2ohha2: 2ohh A:255-403 [231070] Other proteins in same PDB: d2ohha1, d2ohhb1, d2ohhd1, d2ohhe1 automated match to d1ycfa1 complexed with fe, fmn, so4

       2. Domain d2ohhb2: 2ohh B:255-403 [231072] Other proteins in same PDB: d2ohha1, d2ohhb1, d2ohhd1, d2ohhe1 automated match to d1ycfa1 complexed with fe, fmn, so4

       3. Domain d2ohhe2: 2ohh E:255-403 [231075] Other proteins in same PDB: d2ohha1, d2ohhb1, d2ohhd1, d2ohhe1 automated match to d1ycfa1 complexed with fe, fmn, so4

    2. Domains for 2ohi:

       1. Domain d2ohia2: 2ohi A:255-403 [231074] Other proteins in same PDB: d2ohia1, d2ohib1, d2ohid1, d2ohie1, d2ohig1, d2ohih1, d2ohii1, d2ohij1 automated match to d1ycfa1 complexed with cl, fe, fmn

       2. Domain d2ohib2: 2ohi B:255-403 [231073] Other proteins in same PDB: d2ohia1, d2ohib1, d2ohid1, d2ohie1, d2ohig1, d2ohih1, d2ohii1, d2ohij1 automated match to d1ycfa1 complexed with cl, fe, fmn

       3. Domain d2ohid2: 2ohi D:255-403 [231071] Other proteins in same PDB: d2ohia1, d2ohib1, d2ohid1, d2ohie1, d2ohig1, d2ohih1, d2ohii1, d2ohij1 automated match to d1ycfa1 complexed with cl, fe, fmn

       4. Domain d2ohie2: 2ohi E:255-403 [231082] Other proteins in same PDB: d2ohia1, d2ohib1, d2ohid1, d2ohie1, d2ohig1, d2ohih1, d2ohii1, d2ohij1 automated match to d1ycfa1 complexed with cl, fe, fmn

       5. Domain d2ohig2: 2ohi G:255-403 [231076] Other proteins in same PDB: d2ohia1, d2ohib1, d2ohid1, d2ohie1, d2ohig1, d2ohih1, d2ohii1, d2ohij1 automated match to d1ycfa1 complexed with cl, fe, fmn

       6. Domain d2ohih2: 2ohi H:255-403 [231080] Other proteins in same PDB: d2ohia1, d2ohib1, d2ohid1, d2ohie1, d2ohig1, d2ohih1, d2ohii1, d2ohij1 automated match to d1ycfa1 complexed with cl, fe, fmn

       7. Domain d2ohii2: 2ohi I:255-403 [231083] Other proteins in same PDB: d2ohia1, d2ohib1, d2ohid1, d2ohie1, d2ohig1, d2ohih1, d2ohii1, d2ohij1 automated match to d1ycfa1 complexed with cl, fe, fmn

       8. Domain d2ohij2: 2ohi J:255-403 [231077] Other proteins in same PDB: d2ohia1, d2ohib1, d2ohid1, d2ohie1, d2ohig1, d2ohih1, d2ohii1, d2ohij1 automated match to d1ycfa1 complexed with cl, fe, fmn

    3. Domains for 2ohj:

       1. Domain d2ohja2: 2ohj A:255-403 [231085] Other proteins in same PDB: d2ohja1, d2ohjb1, d2ohjd1, d2ohje1 automated match to d1ycfa1 complexed with cl, fe, fmn

       2. Domain d2ohjb2: 2ohj B:255-403 [231078] Other proteins in same PDB: d2ohja1, d2ohjb1, d2ohjd1, d2ohje1 automated match to d1ycfa1 complexed with cl, fe, fmn

       3. Domain d2ohjd2: 2ohj D:255-403 [231087] Other proteins in same PDB: d2ohja1, d2ohjb1, d2ohjd1, d2ohje1 automated match to d1ycfa1 complexed with cl, fe, fmn

       4. Domain d2ohje2: 2ohj E:255-403 [231079] Other proteins in same PDB: d2ohja1, d2ohjb1, d2ohjd1, d2ohje1 automated match to d1ycfa1 complexed with cl, fe, fmn

13. Moorella thermoacetica [TaxId:1525] [254979] (1 PDB entry)
    • Domains for 1ycf:

      1. Domain d1ycfb1: 1ycf B:251-399 [122943] Other proteins in same PDB: d1ycfa1, d1ycfa2, d1ycfb2, d1ycfc2, d1ycfd2 automated match to d1ycga1 complexed with feo, fmn, oxy, zn

      2. Domain d1ycfc1: 1ycf C:251-399 [122945] Other proteins in same PDB: d1ycfa1, d1ycfa2, d1ycfb2, d1ycfc2, d1ycfd2 automated match to d1ycga1 complexed with feo, fmn, oxy, zn

      3. Domain d1ycfd1: 1ycf D:251-399 [122947] Other proteins in same PDB: d1ycfa1, d1ycfa2, d1ycfb2, d1ycfc2, d1ycfd2 automated match to d1ycga1 complexed with feo, fmn, oxy, zn

14. Norway rat (Rattus norvegicus) [TaxId:10116] [255999] (2 PDB entries)

    1. Domain for 3ojw:

       • Domain d3ojwa1: 3ojw A:66-239 [248307] Other proteins in same PDB: d3ojwa2, d3ojwa3 automated match to d1ja1a2 complexed with fad, fmn

    2. Domain for 3ojx:

       • Domain d3ojxa1: 3ojx A:67-239 [248310] Other proteins in same PDB: d3ojxa2, d3ojxa3 automated match to d1ja1a2 complexed with fad, fmn, nap

15. Paracoccus denitrificans [TaxId:318586] [226510] (1 PDB entry)

    • Domains for 3u7r:

      1. Domain d3u7ra_: 3u7r A: [217214] automated match to d1t0ib_ complexed with 2pe, fnr

      2. Domain d3u7rb_: 3u7r B: [217215] automated match to d1t0ib_ complexed with 2pe, fnr

16. Pseudomonas sp. [TaxId:165468] [256995] (2 PDB entries)

    1. Domains for 4la4:

       1. Domain d4la4a_: 4la4 A: [256996] automated match to d1ydga_

       2. Domain d4la4b_: 4la4 B: [262917] automated match to d4la4a_

    2. Domains for 4laf:

       1. Domain d4lafa_: 4laf A: [266650] automated match to d4la4a_ complexed with fmn

       2. Domain d4lafb_: 4laf B: [266651] automated match to d4la4a_ complexed with fmn

       3. Domain d4lafc_: 4laf C: [266652] automated match to d4la4a_ complexed with fmn

       4. Domain d4lafd_: 4laf D: [266653] automated match to d4la4a_ complexed with fmn

17. Sulfolobus tokodaii [TaxId:111955] [188428] (1 PDB entry)

    • Domains for 2zki:

      1. Domain d2zkia_: 2zki A: [198802] automated match to d2zkid_ complexed with so4

      2. Domain d2zkib_: 2zki B: [198803] automated match to d2zkid_ complexed with so4

      3. Domain d2zkic_: 2zki C: [198804] automated match to d2zkid_ complexed with so4

      4. Domain d2zkid_: 2zki D: [171286] automated match to d2a5la1 complexed with so4

      5. Domain d2zkie_: 2zki E: [198805] automated match to d2zkid_ complexed with so4

      6. Domain d2zkif_: 2zki F: [198806] automated match to d2zkid_ complexed with so4

      7. Domain d2zkig_: 2zki G: [198807] automated match to d2zkid_ complexed with so4

      8. Domain d2zkih_: 2zki H: [198808] automated match to d2zkid_ complexed with so4

18. Thermotoga maritima [TaxId:2336] [226499] (2 PDB entries)

    1. Domains for 4dik:

       1. Domain d4dika2: 4dik A:251-398 [219780] Other proteins in same PDB: d4dika1, d4dikb1 automated match to d1vmea1 complexed with cl, feo; mutant

       2. Domain d4dikb2: 4dik B:251-398 [219782] Other proteins in same PDB: d4dika1, d4dikb1 automated match to d1vmea1 complexed with cl, feo; mutant

    2. Domains for 4dil:

       1. Domain d4dila2: 4dil A:251-398 [219784] Other proteins in same PDB: d4dila1, d4dilb1 automated match to d1vmea1 complexed with cl, feo; mutant

       2. Domain d4dilb2: 4dil B:251-398 [219786] Other proteins in same PDB: d4dila1, d4dilb1 automated match to d1vmea1 complexed with cl, feo; mutant

More info for Protein automated matches from c.23.5.0: automated matches

Timeline for Protein automated matches from c.23.5.0: automated matches:

• Protein automated matches from c.23.5.0: automated matches first appeared in SCOPe 2.01
  
• Protein automated matches from c.23.5.0: automated matches appears in SCOPe 2.04
  
• Protein automated matches from c.23.5.0: automated matches appears in SCOPe 2.06
  
• Protein automated matches from c.23.5.0: automated matches appears in the current release, SCOPe 2.08