Lineage for Protein: automated matches

  1. Root: SCOPe 2.06
  2. 2078559Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
  3. 2078560Fold c.1: TIM beta/alpha-barrel [51350] (33 superfamilies)
    contains parallel beta-sheet barrel, closed; n=8, S=8; strand order 12345678
    the first seven superfamilies have similar phosphate-binding sites
  4. 2084338Superfamily c.1.9: Metallo-dependent hydrolases [51556] (19 families) (S)
    the beta-sheet barrel is similarly distorted and capped by a C-terminal helix
    has transition metal ions bound inside the barrel
  5. 2084960Family c.1.9.0: automated matches [191327] (1 protein)
    not a true family
  6. 2084961Protein automated matches [190150] (26 species)
    not a true protein

Species:

  1. 2084962Acinetobacter baumannii [TaxId:480119] [226540] (1 PDB entry)
  2. 2084964Arthrobacter aurescens [TaxId:290340] [189973] (1 PDB entry)
  3. 2084967Bordetella bronchiseptica [TaxId:518] [255848] (2 PDB entries)
    1. Domains for 3gip:
      1. 2084968Domain d3gipa2: 3gip A:61-418 [246305]
        Other proteins in same PDB: d3gipa1, d3gipa3, d3gipb1, d3gipb3
        automated match to d1rk6a3
        complexed with acy, fmt, zn
      2. 2084969Domain d3gipb2: 3gip B:61-418 [246308]
        Other proteins in same PDB: d3gipa1, d3gipa3, d3gipb1, d3gipb3
        automated match to d1rk6a3
        complexed with acy, fmt, zn
    2. Domains for 3giq:
      1. 2084970Domain d3giqa2: 3giq A:61-418 [246311]
        Other proteins in same PDB: d3giqa1, d3giqa3, d3giqb1, d3giqb3
        automated match to d1rk6a3
        complexed with g01, zn
      2. 2084971Domain d3giqb2: 3giq B:61-418 [246314]
        Other proteins in same PDB: d3giqa1, d3giqa3, d3giqb1, d3giqb3
        automated match to d1rk6a3
        complexed with g01, zn
  4. 2084972Burkholderia cenocepacia [TaxId:216591] [256356] (1 PDB entry)
  5. 2084975Campylobacter jejuni [TaxId:192222] [226030] (1 PDB entry)
  6. 2084978Caulobacter vibrioides [TaxId:190650] [255551] (1 PDB entry)
  7. 2084982Deinococcus radiodurans [TaxId:1299] [188838] (1 PDB entry)
  8. 2084984Escherichia coli K-12 [TaxId:83333] [186875] (1 PDB entry)
  9. 2084986Escherichia coli [TaxId:83333] [257011] (1 PDB entry)
  10. 2084995Geobacillus kaustophilus [TaxId:1462] [189526] (16 PDB entries)
    1. Domain for 3ojg:
    2. Domains for 3orw:
      1. 2085023Domain d3orwa_: 3orw A: [200157]
        automated match to d3orwb_
        complexed with co
      2. 2085024Domain d3orwb_: 3orw B: [196165]
        automated match to d3ojga_
        complexed with co
    3. Domains for 3tn3:
      1. 2085000Domain d3tn3a_: 3tn3 A: [249953]
        automated match to d3orwa_
        complexed with co
      2. 2085001Domain d3tn3b_: 3tn3 B: [249954]
        automated match to d3orwa_
        complexed with co
    4. Domains for 3tn4:
      1. 2084996Domain d3tn4a_: 3tn4 A: [249955]
        automated match to d3orwa_
        complexed with co; mutant
      2. 2084997Domain d3tn4b_: 3tn4 B: [249956]
        automated match to d3orwa_
        complexed with co; mutant
    5. Domains for 3tn5:
      1. 2085004Domain d3tn5a_: 3tn5 A: [249957]
        automated match to d3orwa_
        complexed with co, po4; mutant
      2. 2085005Domain d3tn5b_: 3tn5 B: [249958]
        automated match to d3orwa_
        complexed with co, po4; mutant
    6. Domains for 3tn6:
      1. 2085002Domain d3tn6a_: 3tn6 A: [249959]
        automated match to d3orwa_
        complexed with co; mutant
      2. 2085003Domain d3tn6b_: 3tn6 B: [249960]
        automated match to d3orwa_
        complexed with co; mutant
    7. Domains for 3tnb:
      1. 2084998Domain d3tnba_: 3tnb A: [249962]
        automated match to d3orwa_
        complexed with co; mutant
      2. 2084999Domain d3tnbb_: 3tnb B: [249963]
        automated match to d3orwa_
        complexed with co; mutant
    8. Domains for 4h9t:
      1. 2085011Domain d4h9ta_: 4h9t A: [193071]
        automated match to d3ojga_
        complexed with fe, hl4, mn; mutant
      2. 2085012Domain d4h9tb_: 4h9t B: [202395]
        automated match to d4h9ta_
        complexed with fe, hl4, mn; mutant
    9. Domains for 4h9u:
      1. 2085009Domain d4h9ua_: 4h9u A: [202396]
        automated match to d4h9ub_
        complexed with fe, oh, zn
      2. 2085010Domain d4h9ub_: 4h9u B: [193074]
        automated match to d3ojga_
        complexed with fe, oh, zn
    10. Domains for 4h9v:
      1. 2085007Domain d4h9va_: 4h9v A: [193076]
        automated match to d3ojga_
        complexed with fe, oh, zn; mutant
      2. 2085008Domain d4h9vb_: 4h9v B: [193075]
        automated match to d3ojga_
        complexed with fe, oh, zn; mutant
    11. Domains for 4h9x:
      1. 2085017Domain d4h9xa_: 4h9x A: [193073]
        automated match to d3ojga_
        complexed with fe, hl4, oh, zn; mutant
      2. 2085018Domain d4h9xb_: 4h9x B: [202397]
        automated match to d4h9xa_
        complexed with fe, hl4, oh, zn; mutant
    12. Domains for 4h9y:
      1. 2085013Domain d4h9ya_: 4h9y A: [193070]
        automated match to d3ojga_
        complexed with fe, oh, zn; mutant
      2. 2085014Domain d4h9yb_: 4h9y B: [202398]
        automated match to d4h9ya_
        complexed with fe, oh, zn; mutant
    13. Domains for 4h9z:
      1. 2085025Domain d4h9za_: 4h9z A: [222449]
        automated match to d4h9ya_
        complexed with fe, mn; mutant
      2. 2085026Domain d4h9zb_: 4h9z B: [222450]
        automated match to d4h9ya_
        complexed with fe, mn; mutant
    14. Domains for 4ha0:
      1. 2085015Domain d4ha0a_: 4ha0 A: [193078]
        automated match to d3ojga_
        complexed with fe, oh, zn; mutant
      2. 2085016Domain d4ha0b_: 4ha0 B: [202399]
        automated match to d4ha0a_
        complexed with fe, oh, zn; mutant
    15. Domains for 4wvx:
      1. 2085019Domain d4wvxa_: 4wvx A: [279353]
        automated match to d3tn5a_
        complexed with co, edo
      2. 2085020Domain d4wvxb_: 4wvx B: [279352]
        automated match to d3tn5a_
        complexed with co, edo
    16. Domains for 5ch9:
      1. 2085021Domain d5ch9a_: 5ch9 A: [276653]
        automated match to d3tn5a_
        complexed with co; mutant
      2. 2085022Domain d5ch9b_: 5ch9 B: [276652]
        automated match to d3tn5a_
        complexed with co; mutant
  11. 2085027Geobacillus stearothermophilus [TaxId:272567] [188974] (2 PDB entries)
    1. Domains for 3f4c:
      1. 2085028Domain d3f4ca1: 3f4c A:101-423 [175456]
        Other proteins in same PDB: d3f4ca2, d3f4cb2
        automated match to d2d2ga1
        complexed with co, gol
      2. 2085029Domain d3f4cb1: 3f4c B:101-423 [175457]
        Other proteins in same PDB: d3f4ca2, d3f4cb2
        automated match to d2d2ga1
        complexed with co, gol
    2. Domains for 3f4d:
      1. 2085030Domain d3f4da1: 3f4d A:3-325 [175458]
        Other proteins in same PDB: d3f4da2, d3f4db2
        automated match to d2d2ga1
        complexed with co
      2. 2085031Domain d3f4db1: 3f4d B:3-325 [175459]
        Other proteins in same PDB: d3f4da2, d3f4db2
        automated match to d2d2ga1
        complexed with co
  12. 2085032Human (Homo sapiens) [TaxId:9606] [189102] (6 PDB entries)
    1. Domain for 2wm1:
    2. Domains for 2y1h:
      1. 2085040Domain d2y1ha1: 2y1h A:5-272 [196394]
        Other proteins in same PDB: d2y1ha2
        automated match to d2gzxa_
        complexed with edo, ni, po4, zn
      2. 2085041Domain d2y1hb_: 2y1h B: [196393]
        Other proteins in same PDB: d2y1ha2
        automated match to d2gzxa_
        complexed with edo, ni, po4, zn
    3. Domains for 4igm:
      1. 2085048Domain d4igma_: 4igm A: [256777]
        automated match to d2wm1a_
        complexed with zn
      2. 2085049Domain d4igmb_: 4igm B: [256778]
        automated match to d2wm1a_
        complexed with zn
      3. 2085050Domain d4igmc_: 4igm C: [256779]
        automated match to d2wm1a_
        complexed with zn
      4. 2085051Domain d4igmd_: 4igm D: [262719]
        automated match to d4ofca_
        complexed with zn
      5. 2085052Domain d4igme_: 4igm E: [262720]
        automated match to d4ofca_
        complexed with zn
      6. 2085053Domain d4igmf_: 4igm F: [262721]
        automated match to d4ofca_
        complexed with zn
    4. Domains for 4ign:
      1. 2085042Domain d4igna_: 4ign A: [256780]
        automated match to d2wm1a_
        complexed with zn; mutant
      2. 2085043Domain d4ignb_: 4ign B: [261074]
        automated match to d2wm1a_
        complexed with zn; mutant
      3. 2085044Domain d4ignc_: 4ign C: [261072]
        automated match to d2wm1a_
        complexed with zn; mutant
      4. 2085045Domain d4ignd_: 4ign D: [261071]
        automated match to d2wm1a_
        complexed with zn; mutant
      5. 2085046Domain d4igne_: 4ign E: [261070]
        automated match to d2wm1a_
        complexed with zn; mutant
      6. 2085047Domain d4ignf_: 4ign F: [261073]
        automated match to d2wm1a_
        complexed with zn; mutant
    5. Domains for 4ih3:
      1. 2085054Domain d4ih3a_: 4ih3 A: [261210]
        automated match to d2wm1a_
        complexed with pdc, zn
      2. 2085055Domain d4ih3b_: 4ih3 B: [298379]
        automated match to d4igna_
        complexed with pdc, zn
      3. 2085056Domain d4ih3c_: 4ih3 C: [298380]
        automated match to d4igna_
        complexed with pdc, zn
      4. 2085057Domain d4ih3d_: 4ih3 D: [298381]
        automated match to d4igna_
        complexed with pdc, zn
      5. 2085058Domain d4ih3e_: 4ih3 E: [298382]
        automated match to d4igna_
        complexed with pdc, zn
      6. 2085059Domain d4ih3f_: 4ih3 F: [298383]
        automated match to d4igna_
        complexed with pdc, zn
    6. Domains for 4ofc:
      1. 2085034Domain d4ofca_: 4ofc A: [261117]
        automated match to d2wm1a_
        complexed with zn
      2. 2085035Domain d4ofcb_: 4ofc B: [261233]
        automated match to d2wm1a_
        complexed with zn
      3. 2085036Domain d4ofcc_: 4ofc C: [300016]
        automated match to d4ofca_
        complexed with zn
      4. 2085037Domain d4ofcd_: 4ofc D: [261118]
        automated match to d2wm1a_
        complexed with zn
      5. 2085038Domain d4ofce_: 4ofc E: [300017]
        automated match to d4ofca_
        complexed with zn
      6. 2085039Domain d4ofcf_: 4ofc F: [300018]
        automated match to d4ofca_
        complexed with zn
  13. 2085060Lactobacillus acidophilus [TaxId:1579] [225736] (1 PDB entry)
  14. 2085065Listeria monocytogenes [TaxId:267410] [189815] (1 PDB entry)
  15. 2085072Mycobacterium tuberculosis [TaxId:1773] [229823] (1 PDB entry)
  16. 2085074Novosphingobium aromaticivorans [TaxId:279238] [267952] (6 PDB entries)
    1. Domains for 4inf:
      1. 2085079Domain d4infa_: 4inf A: [266458]
        automated match to d3s4ta_
        complexed with ca, cl, gol, oxd
      2. 2085080Domain d4infb_: 4inf B: [266459]
        automated match to d3s4ta_
        complexed with ca, cl, gol, oxd
      3. 2085081Domain d4infc_: 4inf C: [266460]
        automated match to d3s4ta_
        complexed with ca, cl, gol, oxd
      4. 2085082Domain d4infd_: 4inf D: [266461]
        automated match to d3s4ta_
        complexed with ca, cl, gol, oxd
    2. Domains for 4ing:
      1. 2085091Domain d4inga_: 4ing A: [307545]
        automated match to d4infa_
        complexed with 1df, ca, cl
      2. 2085092Domain d4ingb_: 4ing B: [307546]
        automated match to d4infa_
        complexed with 1df, ca, cl
    3. Domains for 4qrn:
      1. 2085075Domain d4qrna1: 4qrn A:1-351 [300543]
        Other proteins in same PDB: d4qrna2
        automated match to d4infa_
        complexed with 1df, act, cl, gol, mn
      2. 2085076Domain d4qrnb_: 4qrn B: [267339]
        Other proteins in same PDB: d4qrna2
        automated match to d3s4ta_
        complexed with 1df, act, cl, gol, mn
      3. 2085077Domain d4qrnc_: 4qrn C: [267340]
        Other proteins in same PDB: d4qrna2
        automated match to d3s4ta_
        complexed with 1df, act, cl, gol, mn
      4. 2085078Domain d4qrnd_: 4qrn D: [267341]
        Other proteins in same PDB: d4qrna2
        automated match to d3s4ta_
        complexed with 1df, act, cl, gol, mn
    4. Domains for 4qs5:
      1. 2085087Domain d4qs5a_: 4qs5 A: [267342]
        automated match to d3s4ta_
        complexed with 1df, act, cl, gol, mn; mutant
      2. 2085088Domain d4qs5b_: 4qs5 B: [267343]
        automated match to d3s4ta_
        complexed with 1df, act, cl, gol, mn; mutant
      3. 2085089Domain d4qs5c_: 4qs5 C: [267344]
        automated match to d3s4ta_
        complexed with 1df, act, cl, gol, mn; mutant
      4. 2085090Domain d4qs5d_: 4qs5 D: [267345]
        automated match to d3s4ta_
        complexed with 1df, act, cl, gol, mn; mutant
    5. Domains for 4qs6:
      1. 2085085Domain d4qs6a_: 4qs6 A: [267346]
        automated match to d3s4ta_
        complexed with 1df, cl, gol; mutant
      2. 2085086Domain d4qs6b_: 4qs6 B: [267347]
        automated match to d3s4ta_
        complexed with 1df, cl, gol; mutant
    6. Domains for 4qtg:
      1. 2085083Domain d4qtga_: 4qtg A: [267365]
        automated match to d3s4ta_
        complexed with gol, mn
      2. 2085084Domain d4qtgb_: 4qtg B: [267366]
        automated match to d3s4ta_
        complexed with gol, mn
  17. 2085093Pseudomonas putida [TaxId:160488] [226114] (1 PDB entry)
  18. 2085095Salmonella enterica [TaxId:99287] [311298] (1 PDB entry)
  19. 2085100Salmonella typhimurium [TaxId:90371] [189010] (1 PDB entry)
  20. 2085104Staphylococcus aureus [TaxId:196620] [187776] (1 PDB entry)
  21. 2085107Sulfolobus islandicus [TaxId:426118] [193063] (1 PDB entry)
  22. 2085109Sulfolobus solfataricus [TaxId:2287] [188418] (10 PDB entries)
    1. Domains for 2vc5:
      1. 2085138Domain d2vc5a_: 2vc5 A: [168450]
        automated match to d2d2ga1
        complexed with co, edo, fe, gol
      2. 2085139Domain d2vc5b_: 2vc5 B: [168451]
        automated match to d2d2ga1
        complexed with co, edo, fe, gol
      3. 2085140Domain d2vc5c_: 2vc5 C: [168452]
        automated match to d2d2ga1
        complexed with co, edo, fe, gol
      4. 2085141Domain d2vc5d_: 2vc5 D: [168453]
        automated match to d2d2ga1
        complexed with co, edo, fe, gol
    2. Domains for 2vc7:
      1. 2085126Domain d2vc7a_: 2vc7 A: [168456]
        automated match to d2d2ga1
        complexed with co, edo, fe, gol, ht5
      2. 2085127Domain d2vc7b_: 2vc7 B: [168457]
        automated match to d2d2ga1
        complexed with co, edo, fe, gol, ht5
      3. 2085128Domain d2vc7c_: 2vc7 C: [168458]
        automated match to d2d2ga1
        complexed with co, edo, fe, gol, ht5
      4. 2085129Domain d2vc7d_: 2vc7 D: [168459]
        automated match to d2d2ga1
        complexed with co, edo, fe, gol, ht5
    3. Domains for 3uf9:
      1. 2085146Domain d3uf9a_: 3uf9 A: [193156]
        automated match to d2vc7a_
        complexed with co, fe2, fst, gol
      2. 2085147Domain d3uf9b_: 3uf9 B: [193155]
        automated match to d2vc7a_
        complexed with co, fe2, fst, gol
      3. 2085148Domain d3uf9c_: 3uf9 C: [200979]
        automated match to d2vc7a_
        complexed with co, fe2, fst, gol
      4. 2085149Domain d3uf9d_: 3uf9 D: [200980]
        automated match to d2vc7a_
        complexed with co, fe2, fst, gol
    4. Domains for 4ker:
      1. 2085134Domain d4kera_: 4ker A: [228062]
        automated match to d2vc7a_
        complexed with co, edo, fe2, gol, peg
      2. 2085135Domain d4kerb_: 4ker B: [235147]
        automated match to d4kerd_
        complexed with co, edo, fe2, gol, peg
      3. 2085136Domain d4kerc_: 4ker C: [235145]
        automated match to d4kerd_
        complexed with co, edo, fe2, gol, peg
      4. 2085137Domain d4kerd_: 4ker D: [228061]
        automated match to d2vc7a_
        complexed with co, edo, fe2, gol, peg
    5. Domains for 4kes:
      1. 2085122Domain d4kesa_: 4kes A: [235149]
        automated match to d4kesd_
        complexed with co, edo, fe2, gol, peg
      2. 2085123Domain d4kesb_: 4kes B: [235148]
        automated match to d4kesd_
        complexed with co, edo, fe2, gol, peg
      3. 2085124Domain d4kesc_: 4kes C: [235143]
        automated match to d4kesd_
        complexed with co, edo, fe2, gol, peg
      4. 2085125Domain d4kesd_: 4kes D: [228060]
        automated match to d2vc7a_
        complexed with co, edo, fe2, gol, peg
    6. Domains for 4ket:
      1. 2085114Domain d4keta_: 4ket A: [228059]
        automated match to d2vc7a_
        complexed with co, edo, fe2, gol, peg, pg4
      2. 2085115Domain d4ketb_: 4ket B: [235146]
        automated match to d4ketd_
        complexed with co, edo, fe2, gol, peg, pg4
      3. 2085116Domain d4ketc_: 4ket C: [235144]
        automated match to d4ketd_
        complexed with co, edo, fe2, gol, peg, pg4
      4. 2085117Domain d4ketd_: 4ket D: [228058]
        automated match to d2vc7a_
        complexed with co, edo, fe2, gol, peg, pg4
    7. Domains for 4keu:
      1. 2085130Domain d4keua_: 4keu A: [228057]
        automated match to d2vc7a_
        complexed with co, edo, fe2, gol
      2. 2085131Domain d4keub_: 4keu B: [235150]
        automated match to d4keud_
        complexed with co, edo, fe2, gol
      3. 2085132Domain d4keuc_: 4keu C: [235151]
        automated match to d4keud_
        complexed with co, edo, fe2, gol
      4. 2085133Domain d4keud_: 4keu D: [228056]
        automated match to d2vc7a_
        complexed with co, edo, fe2, gol
    8. Domains for 4kev:
      1. 2085142Domain d4keva_: 4kev A: [228064]
        automated match to d2vc7a_
        complexed with co, fe2
      2. 2085143Domain d4kevb_: 4kev B: [235152]
        automated match to d4kevd_
        complexed with co, fe2
      3. 2085144Domain d4kevc_: 4kev C: [235153]
        automated match to d4kevd_
        complexed with co, fe2
      4. 2085145Domain d4kevd_: 4kev D: [228063]
        automated match to d2vc7a_
        complexed with co, fe2
    9. Domains for 4kez:
      1. 2085110Domain d4keza_: 4kez A: [235155]
        automated match to d4kezd_
        complexed with co, edo, fe2, gol
      2. 2085111Domain d4kezb_: 4kez B: [235156]
        automated match to d4kezd_
        complexed with co, edo, fe2, gol
      3. 2085112Domain d4kezc_: 4kez C: [235154]
        automated match to d4kezd_
        complexed with co, edo, fe2, gol
      4. 2085113Domain d4kezd_: 4kez D: [228066]
        automated match to d2vc7a_
        complexed with co, edo, fe2, gol
    10. Domains for 4kf1:
      1. 2085118Domain d4kf1a_: 4kf1 A: [235157]
        automated match to d4ketd_
        complexed with co, edo, fe2, gol, ht5, pg4
      2. 2085119Domain d4kf1b_: 4kf1 B: [235158]
        automated match to d4ketd_
        complexed with co, edo, fe2, gol, ht5, pg4
      3. 2085120Domain d4kf1c_: 4kf1 C: [235159]
        automated match to d4ketd_
        complexed with co, edo, fe2, gol, ht5, pg4
      4. 2085121Domain d4kf1d_: 4kf1 D: [235160]
        automated match to d4ketd_
        complexed with co, edo, fe2, gol, ht5, pg4
  23. 2085150Vulcanisaeta moutnovskia [TaxId:985053] [269342] (3 PDB entries)
    1. Domains for 4rdy:
      1. 2085153Domain d4rdya_: 4rdy A: [269346]
        automated match to d4g2da_
        complexed with 3m5, co, gol, so4
      2. 2085154Domain d4rdyb_: 4rdy B: [269343]
        automated match to d4g2da_
        complexed with 3m5, co, gol, so4
    2. Domains for 4rdz:
      1. 2085151Domain d4rdza1: 4rdz A:1-314 [269344]
        Other proteins in same PDB: d4rdza2, d4rdzb2
        automated match to d4g2da_
        complexed with co, gol, myr
      2. 2085152Domain d4rdzb1: 4rdz B:1-315 [269345]
        Other proteins in same PDB: d4rdza2, d4rdzb2
        automated match to d4g2da_
        complexed with co, gol, myr
    3. Domain for 4re0:
  24. 2288113Yersinia pestis [TaxId:632] [331414] (1 PDB entry)
  25. 2290254Vibrio cholerae [TaxId:666] [333555] (1 PDB entry)
  26. 2296362Sphingobium sp. [TaxId:627192] [339663] (1 PDB entry)

More info for Protein automated matches from c.1.9.0: automated matches

Timeline for Protein automated matches from c.1.9.0: automated matches: