Lineage for Protein: automated matches

  1. Root: SCOPe 2.06
  2. 2078559Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
  3. 2120592Fold c.50: Macro domain-like [52948] (1 superfamily)
    3 layers: a/b/a; mixed beta-sheet of 6 strands, order 165243, strand 3 is antiparallel to the rest
  4. 2120593Superfamily c.50.1: Macro domain-like [52949] (4 families) (S)
  5. 2120748Family c.50.1.0: automated matches [191326] (1 protein)
    not a true family
  6. 2120749Protein automated matches [190146] (11 species)
    not a true protein

Species:

  1. 2120750Avian infectious bronchitis virus (strain beaudette) [TaxId:11120] [196077] (2 PDB entries)
    1. Domain for 3ejf:
    2. Domain for 3eke:
  2. 2120753Avian infectious bronchitis virus [TaxId:11120] [232123] (2 PDB entries)
    1. Domains for 3ewo:
      1. 2120754Domain d3ewoa1: 3ewo A:1-174 [232124]
        Other proteins in same PDB: d3ewoa2
        automated match to d3ekea_
      2. 2120755Domain d3ewob_: 3ewo B: [232125]
        Other proteins in same PDB: d3ewoa2
        automated match to d3ekea_
    2. Domains for 3ewp:
      1. 2120756Domain d3ewpa1: 3ewp A:1-174 [245925]
        Other proteins in same PDB: d3ewpa2
        automated match to d3ewoa_
        protein/RNA complex; complexed with apr
      2. 2120757Domain d3ewpb_: 3ewp B: [245926]
        Other proteins in same PDB: d3ewpa2
        automated match to d3ewoa_
        protein/RNA complex; complexed with apr
  3. Cow (Bos taurus) [TaxId:9913] [255154] (2 PDB entries)
    1. Domain for 2ewb:
    2. Domain for 2j9a:
  4. 2120761Human (Homo sapiens) [TaxId:9606] [256134] (3 PDB entries)
    1. Domains for 3vfq:
      1. 2120764Domain d3vfqa1: 3vfq A:791-974 [250540]
        automated match to d2dx6a_
        complexed with ar6
      2. 2120765Domain d3vfqa2: 3vfq A:1015-1191 [250541]
        automated match to d2dx6a_
        complexed with ar6
    2. Domains for 4d86:
      1. 2120762Domain d4d86a1: 4d86 A:791-974 [251379]
        automated match to d2dx6a_
        complexed with adp
      2. 2120763Domain d4d86a2: 4d86 A:1015-1191 [251380]
        automated match to d2dx6a_
        complexed with adp
    3. Domain for 5o2d:
  5. 2120766Human coronavirus 229E [TaxId:11137] [225531] (3 PDB entries)
    1. Domain for 3ejg:
    2. Domain for 3ewq:
    3. Domain for 3ewr:
  6. 2120770Human coronavirus nl63 [TaxId:277944] [188918] (1 PDB entry)
  7. 2120772Middle east respiratory syndrome coronavirus [TaxId:1335626] [280335] (3 PDB entries)
    1. Domain for 5dus:
    2. Domain for 5hih:
    3. Domain for 5hol:
  8. 2120774Norway rat (Rattus norvegicus) [TaxId:10116] [186871] (1 PDB entry)
  9. 2120778Thermus thermophilus HB8 [TaxId:300852] [187646] (1 PDB entry)
  10. 2279975Streptomyces coelicolor [TaxId:100226] [323276] (1 PDB entry)
  11. 2290400Oceanobacillus iheyensis [TaxId:221109] [333701] (6 PDB entries)
    1. Domains for 5fud:
      1. 2290401Domain d5fuda1: 5fud A:1-185 [333702]
        Other proteins in same PDB: d5fuda2, d5fudb2
        automated match to d5cb5d_
        complexed with cl, mes, so4
      2. 2290427Domain d5fudb1: 5fud B:1-185 [333728]
        Other proteins in same PDB: d5fuda2, d5fudb2
        automated match to d5cb5d_
        complexed with cl, mes, so4
    2. Domains for 5l9k:
      1. 2290456Domain d5l9kb1: 5l9k B:1-185 [333757]
        Other proteins in same PDB: d5l9ka2, d5l9kb2
        automated match to d5cb5d_
        complexed with ar6, gol
      2. 2290492Domain d5l9ka1: 5l9k A:1-185 [333793]
        Other proteins in same PDB: d5l9ka2, d5l9kb2
        automated match to d5cb5d_
        complexed with ar6, gol
    3. Domains for 5l9q:
      1. 2290458Domain d5l9qa1: 5l9q A:1-185 [333759]
        Other proteins in same PDB: d5l9qa2, d5l9qb2
        automated match to d5cb5d_
        complexed with adp, so4
      2. 2290480Domain d5l9qb1: 5l9q B:1-185 [333781]
        Other proteins in same PDB: d5l9qa2, d5l9qb2
        automated match to d5cb5d_
        complexed with adp, so4
    4. Domain for 5lau:
    5. Domain for 5lbp:
    6. Domains for 5lcc:
      1. 2290448Domain d5lccb1: 5lcc B:1-185 [333749]
        Other proteins in same PDB: d5lcca2, d5lccb2
        automated match to d5cb5d_
        mutant
      2. 2290454Domain d5lcca1: 5lcc A:1-185 [333755]
        Other proteins in same PDB: d5lcca2, d5lccb2
        automated match to d5cb5d_
        mutant

More info for Protein automated matches from c.50.1.0: automated matches

Timeline for Protein automated matches from c.50.1.0: automated matches: