Lineage for Protein: automated matches

  1. Root: SCOPe 2.05
  2. 1886641Class d: Alpha and beta proteins (a+b) [53931] (381 folds)
  3. 1901753Fold d.38: Thioesterase/thiol ester dehydrase-isomerase [54636] (1 superfamily)
    core: beta-alpha-beta(4); 2 layers: alpha/beta
  4. 1901754Superfamily d.38.1: Thioesterase/thiol ester dehydrase-isomerase [54637] (9 families) (S)
  5. 1902478Family d.38.1.0: automated matches [191325] (1 protein)
    not a true family
  6. 1902479Protein automated matches [190143] (32 species)
    not a true protein

Species:

  1. 1902480Aquifex aeolicus [TaxId:63363] [187664] (3 PDB entries)
    1. Domains for 2egi:
      1. 1902485Domain d2egia_: 2egi A: [163999]
        automated match to d1z54a1
        complexed with gol
      2. 1902486Domain d2egic_: 2egi C: [164000]
        automated match to d1z54a1
        complexed with gol
      3. 1902487Domain d2egid_: 2egi D: [164001]
        automated match to d1z54a1
        complexed with gol
      4. 1902488Domain d2egie_: 2egi E: [164002]
        automated match to d1z54a1
        complexed with gol
      5. 1902489Domain d2egif_: 2egi F: [164003]
        automated match to d1z54a1
        complexed with gol
      6. 1902490Domain d2egig_: 2egi G: [164004]
        automated match to d1z54a1
        complexed with gol
      7. 1902491Domain d2egih_: 2egi H: [164005]
        automated match to d1z54a1
        complexed with gol
      8. 1902492Domain d2egii_: 2egi I: [164006]
        automated match to d1z54a1
        complexed with gol
    2. Domains for 2egj:
      1. 1902481Domain d2egja_: 2egj A: [164007]
        automated match to d1z54a1
      2. 1902482Domain d2egjb_: 2egj B: [164008]
        automated match to d1z54a1
    3. Domains for 2egr:
      1. 1902483Domain d2egra_: 2egr A: [164015]
        automated match to d1z54a1
      2. 1902484Domain d2egrb_: 2egr B: [164016]
        automated match to d1z54a1
  2. 1902493Bacillus cereus [TaxId:1396] [186868] (1 PDB entry)
  3. 1902496Bartonella henselae [TaxId:38323] [255863] (1 PDB entry)
  4. 1902501Bordetella bronchiseptica [TaxId:518] [188610] (1 PDB entry)
  5. 1902506Bordetella parapertussis [TaxId:519] [225507] (1 PDB entry)
  6. 1902509Burkholderia thailandensis [TaxId:271848] [193479] (1 PDB entry)
  7. 1902519Campylobacter jejuni [TaxId:354242] [188866] (1 PDB entry)
  8. 1902526Chlorobaculum tepidum [TaxId:194439] [189276] (1 PDB entry)
  9. 1902529Cupriavidus necator [TaxId:264198] [225431] (1 PDB entry)
  10. 1902532Helicobacter pylori [TaxId:85962] [225438] (1 PDB entry)
  11. 1902537Human (Homo sapiens) [TaxId:9606] [255571] (1 PDB entry)
  12. 1902550Legionella pneumophila [TaxId:272624] [274202] (1 PDB entry)
  13. 1902559Liberibacter asiaticus [TaxId:537021] [279984] (1 PDB entry)
  14. 1902563Mouse (Mus musculus) [TaxId:10090] [255553] (3 PDB entries)
    1. Domains for 2q2b:
      1. 1902570Domain d2q2ba_: 2q2b A: [243519]
        automated match to d1vpmc_
      2. 1902571Domain d2q2bb_: 2q2b B: [243520]
        automated match to d1vpmc_
    2. Domains for 2v1o:
      1. 1902564Domain d2v1oa_: 2v1o A: [264512]
        automated match to d2qq2j_
        complexed with coa
      2. 1902565Domain d2v1ob_: 2v1o B: [264513]
        automated match to d2qq2j_
        complexed with coa
      3. 1902566Domain d2v1oc_: 2v1o C: [264514]
        automated match to d2qq2j_
        complexed with coa
      4. 1902567Domain d2v1od_: 2v1o D: [264515]
        automated match to d2qq2j_
        complexed with coa
      5. 1902568Domain d2v1oe_: 2v1o E: [264516]
        automated match to d2qq2j_
        complexed with coa
      6. 1902569Domain d2v1of_: 2v1o F: [264517]
        automated match to d2qq2j_
        complexed with coa
    3. Domains for 4zv3:
      1. 1902572Domain d4zv3a1: 4zv3 A:58-206 [273594]
        automated match to d2v1ob_
        complexed with coa
      2. 1902573Domain d4zv3a2: 4zv3 A:222-371 [273595]
        automated match to d2v1ob_
        complexed with coa
      3. 1902574Domain d4zv3b1: 4zv3 B:58-207 [273598]
        automated match to d2v1ob_
        complexed with coa
      4. 1902575Domain d4zv3b2: 4zv3 B:222-371 [273599]
        automated match to d2v1ob_
        complexed with coa
      5. 1902576Domain d4zv3c1: 4zv3 C:58-207 [273596]
        automated match to d2v1ob_
        complexed with coa
      6. 1902577Domain d4zv3c2: 4zv3 C:222-371 [273597]
        automated match to d2v1ob_
        complexed with coa
  15. 1902578Mycobacterium tuberculosis [TaxId:1773] [189981] (1 PDB entry)
  16. 1902581Mycobacterium tuberculosis [TaxId:83332] [225798] (1 PDB entry)
  17. 1902586Neisseria meningitidis [TaxId:272831] [193287] (2 PDB entries)
    1. Domains for 4i83:
      1. 1902591Domain d4i83a_: 4i83 A: [194131]
        automated match to d1z6ba1
      2. 1902592Domain d4i83b_: 4i83 B: [202586]
        automated match to d4i83c_
      3. 1902593Domain d4i83c_: 4i83 C: [194128]
        automated match to d1z6ba1
      4. 1902594Domain d4i83d_: 4i83 D: [202587]
        automated match to d4i83c_
      5. 1902595Domain d4i83e_: 4i83 E: [202588]
        automated match to d4i83c_
      6. 1902596Domain d4i83f_: 4i83 F: [202589]
        automated match to d4i83c_
    2. Domains for 4ien:
      1. 1902587Domain d4iena_: 4ien A: [202607]
        automated match to d4iend_
        complexed with cl, coa, gdp
      2. 1902588Domain d4ienb_: 4ien B: [202608]
        automated match to d4iend_
        complexed with cl, coa, gdp
      3. 1902589Domain d4ienc_: 4ien C: [202609]
        automated match to d4iend_
        complexed with cl, coa, gdp
      4. 1902590Domain d4iend_: 4ien D: [193288]
        automated match to d1vpmc_
        complexed with cl, coa, gdp
  18. 1902597Photobacterium profundum [TaxId:74109] [196962] (2 PDB entries)
    1. Domain for 3r87:
    2. Domain for 4i45:
  19. 1902600Pseudomonas aeruginosa [TaxId:208964] [272670] (5 PDB entries)
    1. Domains for 4qd7:
      1. 1902613Domain d4qd7a_: 4qd7 A: [272683]
        automated match to d2b6ef_
      2. 1902614Domain d4qd7b_: 4qd7 B: [272684]
        automated match to d2b6ef_
      3. 1902615Domain d4qd7c_: 4qd7 C: [272685]
        automated match to d2b6ef_
      4. 1902616Domain d4qd7d_: 4qd7 D: [272688]
        automated match to d2b6ef_
      5. 1902617Domain d4qd7e_: 4qd7 E: [272689]
        automated match to d2b6ef_
      6. 1902618Domain d4qd7f_: 4qd7 F: [272686]
        automated match to d2b6ef_
    2. Domains for 4qd8:
      1. 1902601Domain d4qd8a_: 4qd8 A: [272687]
        automated match to d2b6ef_
        complexed with 0fq
      2. 1902602Domain d4qd8b_: 4qd8 B: [272693]
        automated match to d2b6ef_
        complexed with 0fq
      3. 1902603Domain d4qd8c_: 4qd8 C: [272694]
        automated match to d2b6ef_
        complexed with 0fq
      4. 1902604Domain d4qd8d_: 4qd8 D: [272690]
        automated match to d2b6ef_
        complexed with 0fq
      5. 1902605Domain d4qd8e_: 4qd8 E: [272692]
        automated match to d2b6ef_
        complexed with 0fq
      6. 1902606Domain d4qd8f_: 4qd8 F: [272691]
        automated match to d2b6ef_
        complexed with 0fq
    3. Domains for 4qd9:
      1. 1902607Domain d4qd9a_: 4qd9 A: [272675]
        automated match to d2b6ef_
        complexed with 31b
      2. 1902608Domain d4qd9b_: 4qd9 B: [272672]
        automated match to d2b6ef_
        complexed with 31b
      3. 1902609Domain d4qd9c_: 4qd9 C: [272671]
        automated match to d2b6ef_
        complexed with 31b
      4. 1902610Domain d4qd9d_: 4qd9 D: [272673]
        automated match to d2b6ef_
        complexed with 31b
      5. 1902611Domain d4qd9e_: 4qd9 E: [272674]
        automated match to d2b6ef_
        complexed with 31b
      6. 1902612Domain d4qd9f_: 4qd9 F: [272676]
        automated match to d2b6ef_
        complexed with 31b
    4. Domains for 4qda:
      1. 1902625Domain d4qdaa_: 4qda A: [272682]
        automated match to d2b6eb_
        mutant
      2. 1902626Domain d4qdab_: 4qda B: [272680]
        automated match to d2b6eb_
        mutant
      3. 1902627Domain d4qdac_: 4qda C: [272677]
        automated match to d2b6eb_
        mutant
      4. 1902628Domain d4qdad_: 4qda D: [272678]
        automated match to d2b6eb_
        mutant
      5. 1902629Domain d4qdae_: 4qda E: [272681]
        automated match to d2b6eb_
        mutant
      6. 1902630Domain d4qdaf_: 4qda F: [272679]
        automated match to d2b6eb_
        mutant
    5. Domains for 4qdb:
      1. 1902619Domain d4qdba_: 4qdb A: [272699]
        automated match to d2b6ed_
        mutant
      2. 1902620Domain d4qdbb_: 4qdb B: [272696]
        automated match to d2b6ed_
        mutant
      3. 1902621Domain d4qdbc_: 4qdb C: [272695]
        automated match to d2b6ed_
        mutant
      4. 1902622Domain d4qdbd_: 4qdb D: [272697]
        automated match to d2b6ed_
        mutant
      5. 1902623Domain d4qdbe_: 4qdb E: [272700]
        automated match to d2b6ed_
        mutant
      6. 1902624Domain d4qdbf_: 4qdb F: [272698]
        automated match to d2b6ed_
        mutant
  20. 1902631Pseudomonas aeruginosa [TaxId:287] [277852] (1 PDB entry)
  21. 1902634Shewanella oneidensis [TaxId:70863] [267829] (1 PDB entry)
  22. 1902639Silicibacter sp. [TaxId:292414] [231234] (1 PDB entry)
  23. 1902644Sinorhizobium meliloti [TaxId:266834] [226406] (1 PDB entry)
  24. 1902657Staphylococcus aureus [TaxId:1280] [256169] (1 PDB entry)
  25. 1902659Staphylococcus aureus [TaxId:158878] [260692] (4 PDB entries)
    1. Domains for 4ncp:
      1. 1902663Domain d4ncpa_: 4ncp A: [263113]
        automated match to d4ncpc_
      2. 1902664Domain d4ncpb_: 4ncp B: [263114]
        automated match to d4ncpc_
      3. 1902665Domain d4ncpc_: 4ncp C: [260693]
        automated match to d1y7ua1
      4. 1902666Domain d4ncpd_: 4ncp D: [263115]
        automated match to d4ncpc_
      5. 1902667Domain d4ncpe_: 4ncp E: [263116]
        automated match to d4ncpc_
      6. 1902668Domain d4ncpf_: 4ncp F: [263117]
        automated match to d4ncpc_
    2. Domain for 5egj:
    3. Domains for 5egk:
      1. 1902669Domain d5egka_: 5egk A: [279301]
        automated match to d4ncpc_
      2. 1902670Domain d5egkb_: 5egk B: [279302]
        automated match to d4ncpc_
      3. 1902671Domain d5egkc_: 5egk C: [279300]
        automated match to d4ncpc_
      4. 1902672Domain d5egkd_: 5egk D: [279307]
        automated match to d4ncpc_
      5. 1902673Domain d5egke_: 5egk E: [279306]
        automated match to d4ncpc_
      6. 1902674Domain d5egkf_: 5egk F: [279310]
        automated match to d4ncpc_
    4. Domains for 5eo4:
      1. 1902660Domain d5eo4a_: 5eo4 A: [279618]
        automated match to d2hlja1
      2. 1902661Domain d5eo4b_: 5eo4 B: [279616]
        automated match to d2hlja1
      3. 1902662Domain d5eo4c_: 5eo4 C: [279617]
        automated match to d2hlja1
  26. 1902676Streptococcus mutans [TaxId:210007] [255926] (2 PDB entries)
    1. Domains for 3lbb:
      1. 1902681Domain d3lbba_: 3lbb A: [247436]
        automated match to d4i82a_
        complexed with cl, so4
      2. 1902682Domain d3lbbb_: 3lbb B: [247437]
        automated match to d4i82a_
        complexed with cl, so4
    2. Domains for 3lbe:
      1. 1902677Domain d3lbea_: 3lbe A: [247438]
        automated match to d4i82a_
        complexed with cl, coa
      2. 1902678Domain d3lbeb_: 3lbe B: [247439]
        automated match to d4i82a_
        complexed with cl, coa
      3. 1902679Domain d3lbec_: 3lbe C: [247440]
        automated match to d4i82a_
        complexed with cl, coa
      4. 1902680Domain d3lbed_: 3lbe D: [247441]
        automated match to d4i82a_
        complexed with cl, coa
  27. 1902683Streptococcus pneumoniae [TaxId:170187] [226558] (5 PDB entries)
    1. Domains for 4i82:
      1. 1902697Domain d4i82a_: 4i82 A: [223007]
        automated match to d1wlua_
      2. 1902698Domain d4i82b_: 4i82 B: [223008]
        automated match to d1wlua_
    2. Domains for 4xy5:
      1. 1902684Domain d4xy5a_: 4xy5 A: [272434]
        automated match to d3lbeb_
        mutant
      2. 1902685Domain d4xy5b_: 4xy5 B: [272435]
        automated match to d3lbeb_
        mutant
    3. Domain for 4xy6:
    4. Domains for 4zrb:
      1. 1902689Domain d4zrba_: 4zrb A: [273349]
        automated match to d3lbea_
        complexed with coa
      2. 1902690Domain d4zrbb_: 4zrb B: [273353]
        automated match to d3lbea_
        complexed with coa
      3. 1902691Domain d4zrbc_: 4zrb C: [273354]
        automated match to d3lbea_
        complexed with coa
      4. 1902692Domain d4zrbd_: 4zrb D: [273351]
        automated match to d3lbea_
        complexed with coa
      5. 1902693Domain d4zrbe_: 4zrb E: [273350]
        automated match to d3lbea_
        complexed with coa
      6. 1902694Domain d4zrbf_: 4zrb F: [273355]
        automated match to d3lbea_
        complexed with coa
      7. 1902695Domain d4zrbg_: 4zrb G: [273356]
        automated match to d3lbea_
        complexed with coa
      8. 1902696Domain d4zrbh_: 4zrb H: [273352]
        automated match to d3lbea_
        complexed with coa
    5. Domains for 4zrf:
      1. 1902686Domain d4zrfa_: 4zrf A: [273348]
        automated match to d3lbea_
      2. 1902687Domain d4zrfb_: 4zrf B: [273347]
        automated match to d3lbea_
  28. 1902699Sulfolobus solfataricus [TaxId:2287] [187114] (1 PDB entry)
  29. 1902703Synechocystis sp. [TaxId:1111708] [226643] (1 PDB entry)
  30. 1902706Syntrophus aciditrophicus [TaxId:56780] [267841] (1 PDB entry)
  31. 1902710Yersinia pestis [TaxId:187410] [226504] (1 PDB entry)
  32. 1902713Yersinia pestis [TaxId:632] [257672] (2 PDB entries)
    1. Domains for 4qfw:
      1. 1902714Domain d4qfwa1: 4qfw A:4-115 [257676]
        automated match to d1c8ua1
      2. 1902715Domain d4qfwa2: 4qfw A:116-285 [257677]
        automated match to d1c8ua2
      3. 1902716Domain d4qfwb1: 4qfw B:4-115 [257674]
        automated match to d1c8ua1
      4. 1902717Domain d4qfwb2: 4qfw B:116-285 [257678]
        automated match to d1c8ua2
      5. 1902718Domain d4qfwc1: 4qfw C:4-115 [257673]
        automated match to d1c8ua1
      6. 1902719Domain d4qfwc2: 4qfw C:116-285 [257675]
        automated match to d1c8ua2
    2. Domains for 4r4u:
      1. 1902720Domain d4r4ua1: 4r4u A:2-115 [271489]
        automated match to d1c8ua1
        complexed with coa, mla, na
      2. 1902721Domain d4r4ua2: 4r4u A:116-285 [271490]
        automated match to d1c8ua2
        complexed with coa, mla, na
      3. 1902722Domain d4r4ub1: 4r4u B:2-115 [271487]
        automated match to d1c8ua1
        complexed with coa, mla, na
      4. 1902723Domain d4r4ub2: 4r4u B:116-285 [271488]
        automated match to d1c8ua2
        complexed with coa, mla, na
      5. 1902724Domain d4r4uc1: 4r4u C:2-115 [271482]
        automated match to d1c8ua1
        complexed with coa, mla, na
      6. 1902725Domain d4r4uc2: 4r4u C:116-285 [271483]
        automated match to d1c8ua2
        complexed with coa, mla, na
      7. 1902726Domain d4r4ud1: 4r4u D:4-115 [271485]
        automated match to d1c8ua1
        complexed with coa, mla, na
      8. 1902727Domain d4r4ud2: 4r4u D:116-285 [271486]
        automated match to d1c8ua2
        complexed with coa, mla, na

More info for Protein automated matches from d.38.1.0: automated matches

Timeline for Protein automated matches from d.38.1.0: automated matches: