Lineage for Protein: automated matches

  1. Root: SCOPe 2.05
  2. 1815291Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
  3. 1860688Fold c.56: Phosphorylase/hydrolase-like [53162] (8 superfamilies)
    core: 3 layers, a/b/a ; mixed sheet of 5 strands: order 21354; strand 4 is antiparallel to the rest; contains crossover loops
  4. 1860705Superfamily c.56.2: Purine and uridine phosphorylases [53167] (2 families) (S)
    complex architecture; contains mixed beta-sheet of 8 strands, order 23415867, strands 3, 6 & 7 are antiparallel to the rest; and barrel, closed; n=5, S=8
  5. 1860706Family c.56.2.1: Purine and uridine phosphorylases [53168] (7 proteins)
  6. 1861402Protein automated matches [190142] (18 species)
    not a true protein

Species:

  1. 1861403Aeropyrum pernix [TaxId:272557] [188092] (1 PDB entry)
  2. 1861405Bacillus subtilis [TaxId:1423] [193503] (14 PDB entries)
    1. Domains for 4d8v:
      1. 1861424Domain d4d8va_: 4d8v A: [201643]
        automated match to d4d8vb_
        complexed with ade, so4
      2. 1861425Domain d4d8vb_: 4d8v B: [193504]
        automated match to d1xe3d_
        complexed with ade, so4
    2. Domain for 4d8x:
    3. Domains for 4d8y:
      1. 1861406Domain d4d8ya_: 4d8y A: [219584]
        automated match to d4d8vb_
        complexed with gol, so4
      2. 1861407Domain d4d8yb_: 4d8y B: [219585]
        automated match to d4d8vb_
        complexed with gol, so4
      3. 1861408Domain d4d8yc_: 4d8y C: [219586]
        automated match to d4d8vb_
        complexed with gol, so4
      4. 1861409Domain d4d8yd_: 4d8y D: [219587]
        automated match to d4d8vb_
        complexed with gol, so4
      5. 1861410Domain d4d8ye_: 4d8y E: [219588]
        automated match to d4d8vb_
        complexed with gol, so4
      6. 1861411Domain d4d8yf_: 4d8y F: [219589]
        automated match to d4d8vb_
        complexed with gol, so4
    4. Domains for 4d98:
      1. 1861412Domain d4d98a_: 4d98 A: [219596]
        automated match to d4d8vb_
        complexed with cl, gol, so4
      2. 1861413Domain d4d98b_: 4d98 B: [219597]
        automated match to d4d8vb_
        complexed with cl, gol, so4
    5. Domains for 4d9h:
      1. 1861415Domain d4d9ha_: 4d9h A: [219618]
        automated match to d4d8vb_
        complexed with adn
      2. 1861416Domain d4d9hb_: 4d9h B: [219619]
        automated match to d4d8vb_
        complexed with adn
    6. Domain for 4da0:
    7. Domain for 4da6:
    8. Domain for 4da7:
    9. Domain for 4da8:
    10. Domain for 4dab:
    11. Domain for 4dae:
    12. Domains for 4dan:
      1. 1861421Domain d4dana_: 4dan A: [219653]
        automated match to d4d8vb_
        complexed with 2fa
      2. 1861422Domain d4danb_: 4dan B: [219654]
        automated match to d4d8vb_
        complexed with 2fa
    13. Domains for 4dao:
      1. 1861419Domain d4daoa_: 4dao A: [219655]
        automated match to d4d8vb_
        complexed with ade, gol
      2. 1861420Domain d4daob_: 4dao B: [219656]
        automated match to d4d8vb_
        complexed with ade, gol
    14. Domain for 4dar:
  3. 1861430Cow (Bos taurus) [TaxId:9913] [187265] (1 PDB entry)
  4. 1861432Escherichia coli [TaxId:562] [186867] (5 PDB entries)
    1. Domains for 3df9:
      1. 1861435Domain d3df9a_: 3df9 A: [173883]
        automated match to d1nc3a_
        complexed with df9
      2. 1861436Domain d3df9b_: 3df9 B: [173884]
        automated match to d1nc3a_
        complexed with df9
    2. Domains for 3o4v:
      1. 1861433Domain d3o4va_: 3o4v A: [182797]
        automated match to d1nc1a_
        complexed with 4ct, gol, ipa
      2. 1861434Domain d3o4vb_: 3o4v B: [182798]
        automated match to d1nc1a_
        complexed with 4ct, gol, ipa
    3. Domains for 4tta:
      1. 1861446Domain d4ttaa_: 4tta A: [274768]
        automated match to d4rj2a_
        complexed with fmc, po4, so4; mutant
      2. 1861447Domain d4ttab_: 4tta B: [274769]
        automated match to d4rj2a_
        complexed with fmc, po4, so4; mutant
      3. 1861448Domain d4ttac_: 4tta C: [274770]
        automated match to d4rj2a_
        complexed with fmc, po4, so4; mutant
      4. 1861449Domain d4ttad_: 4tta D: [274771]
        automated match to d4rj2a_
        complexed with fmc, po4, so4; mutant
      5. 1861450Domain d4ttae_: 4tta E: [274772]
        automated match to d4rj2a_
        complexed with fmc, po4, so4; mutant
      6. 1861451Domain d4ttaf_: 4tta F: [274773]
        automated match to d4rj2a_
        complexed with fmc, po4, so4; mutant
    4. Domains for 4tti:
      1. 1861440Domain d4ttia_: 4tti A: [274759]
        automated match to d4rj2a_
        complexed with fmc, po4, so4; mutant
      2. 1861441Domain d4ttib_: 4tti B: [274758]
        automated match to d4rj2a_
        complexed with fmc, po4, so4; mutant
      3. 1861442Domain d4ttic_: 4tti C: [274762]
        automated match to d4rj2a_
        complexed with fmc, po4, so4; mutant
      4. 1861443Domain d4ttid_: 4tti D: [274763]
        automated match to d4rj2a_
        complexed with fmc, po4, so4; mutant
      5. 1861444Domain d4ttie_: 4tti E: [274764]
        automated match to d4rj2a_
        complexed with fmc, po4, so4; mutant
      6. 1861445Domain d4ttif_: 4tti F: [274767]
        automated match to d4rj2a_
        complexed with fmc, po4, so4; mutant
    5. Domains for 4ttj:
      1. 1861437Domain d4ttja_: 4ttj A: [274755]
        automated match to d4rj2a_
        complexed with fmc, po4, so4; mutant
      2. 1861438Domain d4ttjb_: 4ttj B: [274756]
        automated match to d4rj2a_
        complexed with fmc, po4, so4; mutant
      3. 1861439Domain d4ttjd_: 4ttj D: [274757]
        automated match to d4rj2a_
        complexed with fmc, po4, so4; mutant
  5. 1861452Human (Homo sapiens) [TaxId:9606] [256021] (5 PDB entries)
    1. Domains for 3phb:
      1. 1861471Domain d3phbe_: 3phb E: [248497]
        automated match to d1ulba_
        complexed with im5, po4
      2. 1861472Domain d3phbq_: 3phb Q: [248498]
        automated match to d1ulba_
        complexed with im5, po4
      3. 1861473Domain d3phbs_: 3phb S: [248499]
        automated match to d1ulba_
        complexed with im5, po4
      4. 1861474Domain d3phbt_: 3phb T: [248500]
        automated match to d1ulba_
        complexed with im5, po4
      5. 1861475Domain d3phbu_: 3phb U: [248501]
        automated match to d1ulba_
        complexed with im5, po4
      6. 1861476Domain d3phby_: 3phb Y: [248502]
        automated match to d1ulba_
        complexed with im5, po4
    2. Domains for 4ear:
      1. 1861453Domain d4eara_: 4ear A: [251716]
        automated match to d1ulba_
        complexed with im5, po4; mutant
      2. 1861454Domain d4earb_: 4ear B: [251717]
        automated match to d1ulba_
        complexed with im5, po4; mutant
      3. 1861455Domain d4earc_: 4ear C: [251718]
        automated match to d1ulba_
        complexed with im5, po4; mutant
    3. Domains for 4eb8:
      1. 1861462Domain d4eb8a_: 4eb8 A: [251719]
        automated match to d1ulba_
        complexed with edo, im5, po4; mutant
      2. 1861463Domain d4eb8b_: 4eb8 B: [251720]
        automated match to d1ulba_
        complexed with edo, im5, po4; mutant
      3. 1861464Domain d4eb8c_: 4eb8 C: [251721]
        automated match to d1ulba_
        complexed with edo, im5, po4; mutant
    4. Domains for 4ece:
      1. 1861465Domain d4ecea_: 4ece A: [251723]
        automated match to d1ulba_
        complexed with gun; mutant
      2. 1861466Domain d4eceb_: 4ece B: [251724]
        automated match to d1ulba_
        complexed with gun; mutant
      3. 1861467Domain d4ecec_: 4ece C: [251725]
        automated match to d1ulba_
        complexed with gun; mutant
      4. 1861468Domain d4eced_: 4ece D: [251726]
        automated match to d1ulba_
        complexed with gun; mutant
      5. 1861469Domain d4ecee_: 4ece E: [251727]
        automated match to d1ulba_
        complexed with gun; mutant
      6. 1861470Domain d4ecef_: 4ece F: [251728]
        automated match to d1ulba_
        complexed with gun; mutant
    5. Domains for 4gka:
      1. 1861456Domain d4gkaa_: 4gka A: [252219]
        automated match to d1ulba_
        complexed with gol, po4; mutant
      2. 1861457Domain d4gkab_: 4gka B: [252220]
        automated match to d1ulba_
        complexed with gol, po4; mutant
      3. 1861458Domain d4gkac_: 4gka C: [252221]
        automated match to d1ulba_
        complexed with gol, po4; mutant
      4. 1861459Domain d4gkad_: 4gka D: [252222]
        automated match to d1ulba_
        complexed with gol, po4; mutant
      5. 1861460Domain d4gkae_: 4gka E: [252223]
        automated match to d1ulba_
        complexed with gol, po4; mutant
      6. 1861461Domain d4gkaf_: 4gka F: [252224]
        automated match to d1ulba_
        complexed with gol, po4; mutant
  6. 1861477Klebsiella pneumoniae [TaxId:272620] [193517] (1 PDB entry)
  7. 1861480Malaria parasite (Plasmodium knowlesi) [TaxId:5850] [225033] (1 PDB entry)
  8. 1861482Mycobacterium tuberculosis [TaxId:1773] [189596] (2 PDB entries)
    1. Domains for 3iom:
      1. 1861485Domain d3ioma_: 3iom A: [178491]
        automated match to d1i80a_
        complexed with gng, so4
      2. 1861486Domain d3iomb_: 3iom B: [178492]
        automated match to d1i80a_
        complexed with gng, so4
    2. Domains for 3scz:
      1. 1861483Domain d3scza_: 3scz A: [195091]
        automated match to d1i80a_
        complexed with hpa
      2. 1861484Domain d3sczb_: 3scz B: [195090]
        automated match to d1i80a_
        complexed with hpa
  9. 1861487Plasmodium falciparum [TaxId:36329] [186993] (3 PDB entries)
    1. Domain for 2bsx:
    2. Domains for 3enz:
      1. 1861488Domain d3enza_: 3enz A: [175108]
        automated match to d1nw4a_
        complexed with art, fmt, hpa, na, r1x
      2. 1861489Domain d3enzb_: 3enz B: [175109]
        automated match to d1nw4a_
        complexed with art, fmt, hpa, na, r1x
      3. 1861490Domain d3enzc_: 3enz C: [175110]
        automated match to d1nw4a_
        complexed with art, fmt, hpa, na, r1x
      4. 1861491Domain d3enzd_: 3enz D: [175111]
        automated match to d1nw4a_
        complexed with art, fmt, hpa, na, r1x
      5. 1861492Domain d3enze_: 3enz E: [175112]
        automated match to d1nw4a_
        complexed with art, fmt, hpa, na, r1x
      6. 1861493Domain d3enzf_: 3enz F: [175113]
        automated match to d1nw4a_
        complexed with art, fmt, hpa, na, r1x
    3. Domains for 3fow:
      1. 1861495Domain d3fowa_: 3fow A: [246179]
        automated match to d2bsxa_
        complexed with imh, po4; mutant
      2. 1861496Domain d3fowb_: 3fow B: [246180]
        automated match to d2bsxa_
        complexed with imh, po4; mutant
  10. 1861497Plasmodium vivax [TaxId:5855] [188970] (1 PDB entry)
  11. 1861499Salmonella enterica [TaxId:904139] [196952] (5 PDB entries)
    1. Domains for 4f1w:
      1. 1861500Domain d4f1wa_: 4f1w A: [196953]
        automated match to d1nc1a_
        complexed with ade, edo, peg, pg4, pge
      2. 1861501Domain d4f1wb_: 4f1w B: [197375]
        automated match to d4g89a_
        complexed with ade, edo, peg, pg4, pge
    2. Domains for 4f2p:
      1. 1861502Domain d4f2pa_: 4f2p A: [220988]
        automated match to d4f1wa_
        complexed with 2el, act, edo, gol
      2. 1861503Domain d4f2pb_: 4f2p B: [220989]
        automated match to d4f2wb_
        complexed with 2el, act, edo, gol
    3. Domains for 4f2w:
      1. 1861508Domain d4f2wa_: 4f2w A: [197376]
        automated match to d4g89a_
        complexed with cl, edo, tdi
      2. 1861509Domain d4f2wb_: 4f2w B: [197377]
        automated match to d4g89a_
        complexed with cl, edo, tdi
    4. Domains for 4f3c:
      1. 1861506Domain d4f3ca_: 4f3c A: [221006]
        automated match to d4f1wa_
        complexed with big, edo
      2. 1861507Domain d4f3cb_: 4f3c B: [221007]
        automated match to d4f1wa_
        complexed with big, edo
    5. Domains for 4f3k:
      1. 1861504Domain d4f3ka_: 4f3k A: [221010]
        automated match to d4f1wa_
        complexed with edo, hce
      2. 1861505Domain d4f3kb_: 4f3k B: [221011]
        automated match to d4f1wa_
        complexed with edo, hce
  12. 1861510Salmonella typhimurium [TaxId:99287] [187772] (1 PDB entry)
  13. 1861514Sulfolobus solfataricus [TaxId:2287] [187383] (2 PDB entries)
    1. Domains for 2a8y:
      1. 1861521Domain d2a8ya_: 2a8y A: [162715]
        automated match to d1v4nb_
        complexed with mta, so4
      2. 1861522Domain d2a8yb_: 2a8y B: [162716]
        automated match to d1v4nb_
        complexed with mta, so4
      3. 1861523Domain d2a8yc_: 2a8y C: [162717]
        automated match to d1v4nb_
        complexed with mta, so4
      4. 1861524Domain d2a8yd_: 2a8y D: [162718]
        automated match to d1v4nb_
        complexed with mta, so4
      5. 1861525Domain d2a8ye_: 2a8y E: [162719]
        automated match to d1v4nb_
        complexed with mta, so4
      6. 1861526Domain d2a8yf_: 2a8y F: [162720]
        automated match to d1v4nb_
        complexed with mta, so4
      7. 1861527Domain d2a8yg_: 2a8y G: [162721]
        automated match to d1v4nb_
        complexed with mta, so4
      8. 1861528Domain d2a8yh_: 2a8y H: [162722]
        automated match to d1v4nb_
        complexed with mta, so4
      9. 1861529Domain d2a8yi_: 2a8y I: [162723]
        automated match to d1v4nb_
        complexed with mta, so4
      10. 1861530Domain d2a8yj_: 2a8y J: [162724]
        automated match to d1v4nb_
        complexed with mta, so4
      11. 1861531Domain d2a8yk_: 2a8y K: [162725]
        automated match to d1v4nb_
        complexed with mta, so4
      12. 1861532Domain d2a8yl_: 2a8y L: [162726]
        automated match to d1v4nb_
        complexed with mta, so4
    2. Domains for 3t94:
      1. 1861515Domain d3t94a_: 3t94 A: [200778]
        automated match to d2a8ya_
        complexed with mta, so4
      2. 1861516Domain d3t94b_: 3t94 B: [193655]
        automated match to d2a8ya_
        complexed with mta, so4
      3. 1861517Domain d3t94c_: 3t94 C: [200779]
        automated match to d2a8ya_
        complexed with mta, so4
      4. 1861518Domain d3t94d_: 3t94 D: [200780]
        automated match to d2a8ya_
        complexed with mta, so4
      5. 1861519Domain d3t94e_: 3t94 E: [200781]
        automated match to d2a8ya_
        complexed with mta, so4
      6. 1861520Domain d3t94f_: 3t94 F: [200782]
        automated match to d2a8ya_
        complexed with mta, so4
  14. 1861533Trichomonas vaginalis [TaxId:5722] [187838] (9 PDB entries)
    1. Domain for 1z33:
    2. Domain for 1z34:
    3. Domain for 1z35:
    4. Domain for 1z36:
    5. Domain for 1z37:
    6. Domain for 1z38:
    7. Domain for 1z39:
    8. Domains for 2i4t:
      1. 1861539Domain d2i4ta_: 2i4t A: [165390]
        automated match to d1a69a_
        complexed with po4, ua2
      2. 1861540Domain d2i4tb_: 2i4t B: [165391]
        automated match to d1a69a_
        complexed with po4, ua2
      3. 1861541Domain d2i4tc_: 2i4t C: [165392]
        automated match to d1a69a_
        complexed with po4, ua2
    9. Domains for 2isc:
      1. 1861543Domain d2isca_: 2isc A: [165664]
        automated match to d1a69a_
        complexed with 223, po4
      2. 1861544Domain d2iscb_: 2isc B: [165665]
        automated match to d1a69a_
        complexed with 223, po4
      3. 1861545Domain d2iscc_: 2isc C: [165666]
        automated match to d1a69a_
        complexed with 223, po4
      4. 1861546Domain d2iscd_: 2isc D: [165667]
        automated match to d1a69a_
        complexed with 223, po4
      5. 1861547Domain d2isce_: 2isc E: [165668]
        automated match to d1a69a_
        complexed with 223, po4
      6. 1861548Domain d2iscf_: 2isc F: [165669]
        automated match to d1a69a_
        complexed with 223, po4
  15. 1861550Vibrio cholerae [TaxId:243277] [189490] (2 PDB entries)
    1. Domains for 3o6v:
      1. 1861551Domain d3o6va_: 3o6v A: [182845]
        automated match to d1k3fa_
        complexed with fmt, gol
      2. 1861552Domain d3o6vb_: 3o6v B: [182846]
        automated match to d1k3fa_
        complexed with fmt, gol
    2. Domains for 3pns:
      1. 1861553Domain d3pnsa_: 3pns A: [183888]
        automated match to d1k3fa_
        complexed with acy, cl, fmt, gol, so4, ura
      2. 1861554Domain d3pnsb_: 3pns B: [183889]
        automated match to d1k3fa_
        complexed with acy, cl, fmt, gol, so4, ura
      3. 1861555Domain d3pnsc_: 3pns C: [183890]
        automated match to d1k3fa_
        complexed with acy, cl, fmt, gol, so4, ura
      4. 1861556Domain d3pnsd_: 3pns D: [183891]
        automated match to d1k3fa_
        complexed with acy, cl, fmt, gol, so4, ura
      5. 1861557Domain d3pnse_: 3pns E: [183892]
        automated match to d1k3fa_
        complexed with acy, cl, fmt, gol, so4, ura
      6. 1861558Domain d3pnsf_: 3pns F: [183893]
        automated match to d1k3fa_
        complexed with acy, cl, fmt, gol, so4, ura
      7. 1861559Domain d3pnsg_: 3pns G: [183894]
        automated match to d1k3fa_
        complexed with acy, cl, fmt, gol, so4, ura
      8. 1861560Domain d3pnsh_: 3pns H: [183895]
        automated match to d1k3fa_
        complexed with acy, cl, fmt, gol, so4, ura
      9. 1861561Domain d3pnsi_: 3pns I: [183896]
        automated match to d1k3fa_
        complexed with acy, cl, fmt, gol, so4, ura
      10. 1861562Domain d3pnsj_: 3pns J: [183897]
        automated match to d1k3fa_
        complexed with acy, cl, fmt, gol, so4, ura
      11. 1861563Domain d3pnsk_: 3pns K: [183898]
        automated match to d1k3fa_
        complexed with acy, cl, fmt, gol, so4, ura
      12. 1861564Domain d3pnsl_: 3pns L: [183899]
        automated match to d1k3fa_
        complexed with acy, cl, fmt, gol, so4, ura
  16. 1861565Vibrio cholerae [TaxId:666] [188799] (2 PDB entries)
    1. Domains for 3dp9:
      1. 1861578Domain d3dp9a_: 3dp9 A: [174146]
        automated match to d1jysa_
        complexed with big, iod
      2. 1861579Domain d3dp9c_: 3dp9 C: [174147]
        automated match to d1jysa_
        complexed with big, iod
    2. Domains for 3of3:
      1. 1861566Domain d3of3a_: 3of3 A: [182976]
        automated match to d1vhja_
        complexed with dih, po4
      2. 1861567Domain d3of3b_: 3of3 B: [182977]
        automated match to d1vhja_
        complexed with dih, po4
      3. 1861568Domain d3of3c_: 3of3 C: [182978]
        automated match to d1vhja_
        complexed with dih, po4
      4. 1861569Domain d3of3d_: 3of3 D: [182979]
        automated match to d1vhja_
        complexed with dih, po4
      5. 1861570Domain d3of3e_: 3of3 E: [182980]
        automated match to d1vhja_
        complexed with dih, po4
      6. 1861571Domain d3of3f_: 3of3 F: [182981]
        automated match to d1vhja_
        complexed with dih, po4
      7. 1861572Domain d3of3g_: 3of3 G: [182982]
        automated match to d1vhja_
        complexed with dih, po4
      8. 1861573Domain d3of3h_: 3of3 H: [182983]
        automated match to d1vhja_
        complexed with dih, po4
      9. 1861574Domain d3of3i_: 3of3 I: [182984]
        automated match to d1vhja_
        complexed with dih, po4
      10. 1861575Domain d3of3j_: 3of3 J: [182985]
        automated match to d1vhja_
        complexed with dih, po4
      11. 1861576Domain d3of3k_: 3of3 K: [182986]
        automated match to d1vhja_
        complexed with dih, po4
      12. 1861577Domain d3of3l_: 3of3 L: [182987]
        automated match to d1vhja_
        complexed with dih, po4
  17. 1861580Yersinia pseudotuberculosis [TaxId:273123] [268417] (1 PDB entry)
  18. 1861583Yersinia pseudotuberculosis [TaxId:502800] [189524] (1 PDB entry)

More info for Protein automated matches from c.56.2.1: Purine and uridine phosphorylases

Timeline for Protein automated matches from c.56.2.1: Purine and uridine phosphorylases: