SCOPe 2.02: Protein: automated matches

Lineage for Protein: automated matches

Root: SCOPe 2.02
Class c: Alpha and beta proteins (a/b) [51349] (147 folds)
Fold c.56: Phosphorylase/hydrolase-like [53162] (8 superfamilies)
core: 3 layers, a/b/a ; mixed sheet of 5 strands: order 21354; strand 4 is antiparallel to the rest; contains crossover loops

Superfamily c.56.2: Purine and uridine phosphorylases [53167] (2 families)

complex architecture; contains mixed beta-sheet of 8 strands, order 23415867, strands 3, 6 & 7 are antiparallel to the rest; and barrel, closed; n=5, S=8

Family c.56.2.1: Purine and uridine phosphorylases [53168] (7 proteins)
Protein automated matches [190142] (15 species)
not a true protein

Species:

Aeropyrum pernix [TaxId:272557] [188092] (1 PDB entry)
- Domain for 1wta:
  - Domain d1wtaa_: 1wta A: [161980]
    automated match to d1v4nb_
    complexed with ade, po4
Bacillus subtilis [TaxId:1423] [193503] (1 PDB entry)
- Domain for 4d8v:
  - Domain d4d8vb_: 4d8v B: [193504]
    automated match to d1xe3d_
    complexed with ade, so4
Cow (Bos taurus) [TaxId:9913] [187265] (1 PDB entry)
- Domain for 2qpl:
  - Domain d2qpla_: 2qpl A: [151206]
    automated match to d1a9oa_
    complexed with bty, mg, so4
Escherichia coli [TaxId:562] [186867] (2 PDB entries)
1. Domains for 3df9:
  1. Domain d3df9a_: 3df9 A: [173883]
    automated match to d1nc3a_
    complexed with df9
  2. Domain d3df9b_: 3df9 B: [173884]
    automated match to d1nc3a_
    complexed with df9
2. Domains for 3o4v:
  1. Domain d3o4va_: 3o4v A: [182797]
    automated match to d1nc1a_
    complexed with 4ct, gol, ipa
  2. Domain d3o4vb_: 3o4v B: [182798]
    automated match to d1nc1a_
    complexed with 4ct, gol, ipa
Klebsiella pneumoniae [TaxId:272620] [193517] (1 PDB entry)
- Domains for 4g89:
  1. Domain d4g89a_: 4g89 A: [193518]
    automated match to d1nc1a_
    complexed with ade, sah, so4
  2. Domain d4g89b_: 4g89 B: [194687]
    automated match to d1nc1a_
    complexed with ade, sah, so4
Mycobacterium tuberculosis [TaxId:1773] [189596] (2 PDB entries)
1. Domains for 3iom:
  1. Domain d3ioma_: 3iom A: [178491]
    automated match to d1i80a_
    complexed with gng, so4
  2. Domain d3iomb_: 3iom B: [178492]
    automated match to d1i80a_
    complexed with gng, so4
2. Domains for 3scz:
  1. Domain d3scza_: 3scz A: [195091]
    automated match to d1i80a_
    complexed with hpa
  2. Domain d3sczb_: 3scz B: [195090]
    automated match to d1i80a_
    complexed with hpa
Plasmodium falciparum [TaxId:36329] [186993] (2 PDB entries)
1. Domain for 2bsx:
  - Domain d2bsxa_: 2bsx A: [129128]
    automated match to d1nw4a_
    complexed with nos
2. Domains for 3enz:
  1. Domain d3enza_: 3enz A: [175108]
    automated match to d1nw4a_
    complexed with art, fmt, hpa, na, r1x
  2. Domain d3enzb_: 3enz B: [175109]
    automated match to d1nw4a_
    complexed with art, fmt, hpa, na, r1x
  3. Domain d3enzc_: 3enz C: [175110]
    automated match to d1nw4a_
    complexed with art, fmt, hpa, na, r1x
  4. Domain d3enzd_: 3enz D: [175111]
    automated match to d1nw4a_
    complexed with art, fmt, hpa, na, r1x
  5. Domain d3enze_: 3enz E: [175112]
    automated match to d1nw4a_
    complexed with art, fmt, hpa, na, r1x
  6. Domain d3enzf_: 3enz F: [175113]
    automated match to d1nw4a_
    complexed with art, fmt, hpa, na, r1x
Plasmodium vivax [TaxId:5855] [188970] (1 PDB entry)
- Domain for 3emv:
  - Domain d3emva_: 3emv A: [175092]
    automated match to d1nw4a_
    complexed with so4
Salmonella enterica [TaxId:904139] [196952] (2 PDB entries)
1. Domains for 4f1w:
  1. Domain d4f1wa_: 4f1w A: [196953]
    automated match to d1nc1a_
    complexed with ade, edo, peg, pg4, pge
  2. Domain d4f1wb_: 4f1w B: [197375]
    automated match to d4g89a_
    complexed with ade, edo, peg, pg4, pge
2. Domains for 4f2w:
  1. Domain d4f2wa_: 4f2w A: [197376]
    automated match to d4g89a_
    complexed with cl, edo, tdi
  2. Domain d4f2wb_: 4f2w B: [197377]
    automated match to d4g89a_
    complexed with cl, edo, tdi
Salmonella typhimurium [TaxId:99287] [187772] (1 PDB entry)
- Domains for 2guw:
  1. Domain d2guwa_: 2guw A: [164846]
    automated match to d1t8ra_
  2. Domain d2guwb_: 2guw B: [164847]
    automated match to d1t8ra_
  3. Domain d2guwc_: 2guw C: [164848]
    automated match to d1t8ra_
Sulfolobus solfataricus [TaxId:2287] [187383] (2 PDB entries)
1. Domains for 2a8y:
  1. Domain d2a8ya_: 2a8y A: [162715]
    automated match to d1v4nb_
    complexed with mta, so4
  2. Domain d2a8yb_: 2a8y B: [162716]
    automated match to d1v4nb_
    complexed with mta, so4
  3. Domain d2a8yc_: 2a8y C: [162717]
    automated match to d1v4nb_
    complexed with mta, so4
  4. Domain d2a8yd_: 2a8y D: [162718]
    automated match to d1v4nb_
    complexed with mta, so4
  5. Domain d2a8ye_: 2a8y E: [162719]
    automated match to d1v4nb_
    complexed with mta, so4
  6. Domain d2a8yf_: 2a8y F: [162720]
    automated match to d1v4nb_
    complexed with mta, so4
  7. Domain d2a8yg_: 2a8y G: [162721]
    automated match to d1v4nb_
    complexed with mta, so4
  8. Domain d2a8yh_: 2a8y H: [162722]
    automated match to d1v4nb_
    complexed with mta, so4
  9. Domain d2a8yi_: 2a8y I: [162723]
    automated match to d1v4nb_
    complexed with mta, so4
  10. Domain d2a8yj_: 2a8y J: [162724]
    automated match to d1v4nb_
    complexed with mta, so4
  11. Domain d2a8yk_: 2a8y K: [162725]
    automated match to d1v4nb_
    complexed with mta, so4
  12. Domain d2a8yl_: 2a8y L: [162726]
    automated match to d1v4nb_
    complexed with mta, so4
2. Domain for 3t94:
  - Domain d3t94b_: 3t94 B: [193655]
    automated match to d2a8ya_
    complexed with mta, so4
Trichomonas vaginalis [TaxId:5722] [187838] (9 PDB entries)
1. Domain for 1z33:
  - Domain d1z33a_: 1z33 A: [162363]
    automated match to d1a69a_
2. Domain for 1z34:
  - Domain d1z34a_: 1z34 A: [162364]
    automated match to d1a69a_
    complexed with 2fd
3. Domain for 1z35:
  - Domain d1z35a_: 1z35 A: [162365]
    automated match to d1a69a_
    complexed with 2fa
4. Domain for 1z36:
  - Domain d1z36a_: 1z36 A: [162366]
    automated match to d1a69a_
    complexed with fmc
5. Domain for 1z37:
  - Domain d1z37a_: 1z37 A: [162367]
    automated match to d1a69a_
    complexed with adn
6. Domain for 1z38:
  - Domain d1z38a_: 1z38 A: [162368]
    automated match to d1a69a_
    complexed with nos
7. Domain for 1z39:
  - Domain d1z39a_: 1z39 A: [162369]
    automated match to d1a69a_
    complexed with 2nd
8. Domains for 2i4t:
  1. Domain d2i4ta_: 2i4t A: [165390]
    automated match to d1a69a_
    complexed with po4, ua2
  2. Domain d2i4tb_: 2i4t B: [165391]
    automated match to d1a69a_
    complexed with po4, ua2
  3. Domain d2i4tc_: 2i4t C: [165392]
    automated match to d1a69a_
    complexed with po4, ua2
9. Domains for 2isc:
  1. Domain d2isca_: 2isc A: [165664]
    automated match to d1a69a_
    complexed with 223, po4
  2. Domain d2iscb_: 2isc B: [165665]
    automated match to d1a69a_
    complexed with 223, po4
  3. Domain d2iscc_: 2isc C: [165666]
    automated match to d1a69a_
    complexed with 223, po4
  4. Domain d2iscd_: 2isc D: [165667]
    automated match to d1a69a_
    complexed with 223, po4
  5. Domain d2isce_: 2isc E: [165668]
    automated match to d1a69a_
    complexed with 223, po4
  6. Domain d2iscf_: 2isc F: [165669]
    automated match to d1a69a_
    complexed with 223, po4
Vibrio cholerae [TaxId:243277] [189490] (2 PDB entries)
1. Domains for 3o6v:
  1. Domain d3o6va_: 3o6v A: [182845]
    automated match to d1k3fa_
    complexed with fmt, gol
  2. Domain d3o6vb_: 3o6v B: [182846]
    automated match to d1k3fa_
    complexed with fmt, gol
2. Domains for 3pns:
  1. Domain d3pnsa_: 3pns A: [183888]
    automated match to d1k3fa_
    complexed with acy, cl, fmt, gol, so4, ura
  2. Domain d3pnsb_: 3pns B: [183889]
    automated match to d1k3fa_
    complexed with acy, cl, fmt, gol, so4, ura
  3. Domain d3pnsc_: 3pns C: [183890]
    automated match to d1k3fa_
    complexed with acy, cl, fmt, gol, so4, ura
  4. Domain d3pnsd_: 3pns D: [183891]
    automated match to d1k3fa_
    complexed with acy, cl, fmt, gol, so4, ura
  5. Domain d3pnse_: 3pns E: [183892]
    automated match to d1k3fa_
    complexed with acy, cl, fmt, gol, so4, ura
  6. Domain d3pnsf_: 3pns F: [183893]
    automated match to d1k3fa_
    complexed with acy, cl, fmt, gol, so4, ura
  7. Domain d3pnsg_: 3pns G: [183894]
    automated match to d1k3fa_
    complexed with acy, cl, fmt, gol, so4, ura
  8. Domain d3pnsh_: 3pns H: [183895]
    automated match to d1k3fa_
    complexed with acy, cl, fmt, gol, so4, ura
  9. Domain d3pnsi_: 3pns I: [183896]
    automated match to d1k3fa_
    complexed with acy, cl, fmt, gol, so4, ura
  10. Domain d3pnsj_: 3pns J: [183897]
    automated match to d1k3fa_
    complexed with acy, cl, fmt, gol, so4, ura
  11. Domain d3pnsk_: 3pns K: [183898]
    automated match to d1k3fa_
    complexed with acy, cl, fmt, gol, so4, ura
  12. Domain d3pnsl_: 3pns L: [183899]
    automated match to d1k3fa_
    complexed with acy, cl, fmt, gol, so4, ura
Vibrio cholerae [TaxId:666] [188799] (2 PDB entries)
1. Domains for 3dp9:
  1. Domain d3dp9a_: 3dp9 A: [174146]
    automated match to d1jysa_
    complexed with big, iod
  2. Domain d3dp9c_: 3dp9 C: [174147]
    automated match to d1jysa_
    complexed with big, iod
2. Domains for 3of3:
  1. Domain d3of3a_: 3of3 A: [182976]
    automated match to d1vhja_
    complexed with dih, po4
  2. Domain d3of3b_: 3of3 B: [182977]
    automated match to d1vhja_
    complexed with dih, po4
  3. Domain d3of3c_: 3of3 C: [182978]
    automated match to d1vhja_
    complexed with dih, po4
  4. Domain d3of3d_: 3of3 D: [182979]
    automated match to d1vhja_
    complexed with dih, po4
  5. Domain d3of3e_: 3of3 E: [182980]
    automated match to d1vhja_
    complexed with dih, po4
  6. Domain d3of3f_: 3of3 F: [182981]
    automated match to d1vhja_
    complexed with dih, po4
  7. Domain d3of3g_: 3of3 G: [182982]
    automated match to d1vhja_
    complexed with dih, po4
  8. Domain d3of3h_: 3of3 H: [182983]
    automated match to d1vhja_
    complexed with dih, po4
  9. Domain d3of3i_: 3of3 I: [182984]
    automated match to d1vhja_
    complexed with dih, po4
  10. Domain d3of3j_: 3of3 J: [182985]
    automated match to d1vhja_
    complexed with dih, po4
  11. Domain d3of3k_: 3of3 K: [182986]
    automated match to d1vhja_
    complexed with dih, po4
  12. Domain d3of3l_: 3of3 L: [182987]
    automated match to d1vhja_
    complexed with dih, po4
Yersinia pseudotuberculosis [TaxId:502800] [189524] (1 PDB entry)
- Domains for 3occ:
  1. Domain d3occa_: 3occ A: [182929]
    automated match to d1a69a_
    complexed with dih, po4
  2. Domain d3occb_: 3occ B: [182930]
    automated match to d1a69a_
    complexed with dih, po4
  3. Domain d3occc_: 3occ C: [182931]
    automated match to d1a69a_
    complexed with dih, po4
  4. Domain d3occd_: 3occ D: [182932]
    automated match to d1a69a_
    complexed with dih, po4
  5. Domain d3occe_: 3occ E: [182933]
    automated match to d1a69a_
    complexed with dih, po4
  6. Domain d3occf_: 3occ F: [182934]
    automated match to d1a69a_
    complexed with dih, po4

More info for Protein automated matches from c.56.2.1: Purine and uridine phosphorylases

Timeline for Protein automated matches from c.56.2.1: Purine and uridine phosphorylases:

Protein automated matches from c.56.2.1: Purine and uridine phosphorylases first appeared in SCOPe 2.01
Protein automated matches from c.56.2.1: Purine and uridine phosphorylases appears in SCOPe 2.03
Protein automated matches from c.56.2.1: Purine and uridine phosphorylases appears in the current release, SCOPe 2.08