Lineage for Protein: automated matches

  1. Root: SCOPe 2.03
  2. 1336837Class c: Alpha and beta proteins (a/b) [51349] (147 folds)
  3. 1390576Fold c.94: Periplasmic binding protein-like II [53849] (1 superfamily)
    consists of two similar intertwined domain with 3 layers (a/b/a) each: duplication
    mixed beta-sheet of 5 strands, order 21354; strand 5 is antiparallel to the rest
  4. 1390577Superfamily c.94.1: Periplasmic binding protein-like II [53850] (4 families) (S)
    Similar in architecture to the superfamily I but partly differs in topology
  5. 1390578Family c.94.1.1: Phosphate binding protein-like [53851] (41 proteins)
  6. 1391375Protein automated matches [190140] (13 species)
    not a true protein

Species:

  1. 1391376Baker's yeast (Saccharomyces cerevisiae) [TaxId:559292] [226716] (1 PDB entry)
  2. 1391378Bordetella pertussis [TaxId:257313] [187275] (2 PDB entries)
    1. Domain for 2ows:
    2. Domain for 2owt:
  3. 1391381Burkholderia sp. [TaxId:233098] [190010] (5 PDB entries)
    1. Domains for 2y7k:
      1. 1391383Domain d2y7ka_: 2y7k A: [207493]
        automated match to d2y7pa_
        complexed with sal
      2. 1391384Domain d2y7kb_: 2y7k B: [207494]
        automated match to d2y7pa_
        complexed with sal
      3. 1391385Domain d2y7kc_: 2y7k C: [207495]
        automated match to d2y7pa_
        complexed with sal
      4. 1391386Domain d2y7kd_: 2y7k D: [207496]
        automated match to d2y7pa_
        complexed with sal
    2. Domain for 2y7p:
    3. Domains for 2y7r:
      1. 1391399Domain d2y7ra_: 2y7r A: [170670]
        automated match to d1utba_
      2. 1391400Domain d2y7rb_: 2y7r B: [170671]
        automated match to d1utba_
      3. 1391401Domain d2y7rc_: 2y7r C: [170672]
        automated match to d1utba_
      4. 1391402Domain d2y7rd_: 2y7r D: [170673]
        automated match to d1utba_
      5. 1391403Domain d2y7re_: 2y7r E: [170674]
        automated match to d1utba_
      6. 1391404Domain d2y7rf_: 2y7r F: [170675]
        automated match to d1utba_
      7. 1391405Domain d2y7rg_: 2y7r G: [170676]
        automated match to d1utba_
      8. 1391406Domain d2y7rh_: 2y7r H: [170677]
        automated match to d1utba_
    4. Domains for 2y7w:
      1. 1391395Domain d2y7wa_: 2y7w A: [207497]
        automated match to d2y84h_
        complexed with pg4, sal
      2. 1391396Domain d2y7wb_: 2y7w B: [207498]
        automated match to d2y84h_
        complexed with pg4, sal
      3. 1391397Domain d2y7wc_: 2y7w C: [207499]
        automated match to d2y84h_
        complexed with pg4, sal
      4. 1391398Domain d2y7wd_: 2y7w D: [207500]
        automated match to d2y84h_
        complexed with pg4, sal
    5. Domains for 2y84:
      1. 1391387Domain d2y84a_: 2y84 A: [198681]
        automated match to d2y84h_
        complexed with gol
      2. 1391388Domain d2y84b_: 2y84 B: [198682]
        automated match to d2y84h_
        complexed with gol
      3. 1391389Domain d2y84c_: 2y84 C: [198683]
        automated match to d2y84h_
        complexed with gol
      4. 1391390Domain d2y84d_: 2y84 D: [198684]
        automated match to d2y84h_
        complexed with gol
      5. 1391391Domain d2y84e_: 2y84 E: [198685]
        automated match to d2y84h_
        complexed with gol
      6. 1391392Domain d2y84f_: 2y84 F: [198686]
        automated match to d2y84h_
        complexed with gol
      7. 1391393Domain d2y84g_: 2y84 G: [198687]
        automated match to d2y84h_
        complexed with gol
      8. 1391394Domain d2y84h_: 2y84 H: [196306]
        automated match to d1utbb_
        complexed with gol
  4. Escherichia coli K-12 [TaxId:83333] [189211] (11 PDB entries)
    1. Domains for 3axf:
      1. 1391418Domain d3axfa_: 3axf A: [172370]
        automated match to d1amfa_
        complexed with reo; mutant
      2. 1391419Domain d3axfb_: 3axf B: [172371]
        automated match to d1amfa_
        complexed with reo; mutant
      3. 1391420Domain d3axfc_: 3axf C: [172372]
        automated match to d1amfa_
        complexed with reo; mutant
    2. Domain for 3puv:
    3. Domain for 3puw:
    4. Domain for 3pux:
    5. Domain for 3r26:
    6. Domain for 3rlf:
    7. Domains for 3tcf:
      1. 1391421Domain d3tcfa_: 3tcf A: [185748]
        automated match to d1b05a_
      2. 1391422Domain d3tcfb_: 3tcf B: [185749]
        automated match to d1b05a_
      3. 1391423Domain d3tcfc_: 3tcf C: [185750]
        automated match to d1b05a_
      4. 1391424Domain d3tcfd_: 3tcf D: [185751]
        automated match to d1b05a_
      5. 1391425Domain d3tcfe_: 3tcf E: [185752]
        automated match to d1b05a_
      6. 1391426Domain d3tcff_: 3tcf F: [185753]
        automated match to d1b05a_
      7. 1391427Domain d3tcfg_: 3tcf G: [185754]
        automated match to d1b05a_
      8. 1391428Domain d3tcfh_: 3tcf H: [185755]
        automated match to d1b05a_
    8. Domains for 3tcg:
      1. 1391410Domain d3tcga_: 3tcg A: [185756]
        automated match to d1b05a_
      2. 1391411Domain d3tcgb_: 3tcg B: [185757]
        automated match to d1b05a_
      3. 1391412Domain d3tcgc_: 3tcg C: [185758]
        automated match to d1b05a_
      4. 1391413Domain d3tcgd_: 3tcg D: [185759]
        automated match to d1b05a_
      5. 1391414Domain d3tcge_: 3tcg E: [185760]
        automated match to d1b05a_
      6. 1391415Domain d3tcgf_: 3tcg F: [185761]
        automated match to d1b05a_
      7. 1391416Domain d3tcgg_: 3tcg G: [185762]
        automated match to d1b05a_
      8. 1391417Domain d3tcgh_: 3tcg H: [185763]
        automated match to d1b05a_
    9. Domain for 3tch:
    10. Domain for 4khz:
    11. Domain for 4ki0:
  5. 1391435Escherichia coli [TaxId:562] [189978] (6 PDB entries)
    1. Domains for 3lbs:
      1. 1391443Domain d3lbsa_: 3lbs A: [212790]
        automated match to d1a7lb_
        complexed with mal
      2. 1391444Domain d3lbsb_: 3lbs B: [212791]
        automated match to d1a7lb_
        complexed with mal
    2. Domains for 3lc8:
      1. 1391439Domain d3lc8a_: 3lc8 A: [212792]
        automated match to d1a7lb_
        complexed with gol, mg, pg4
      2. 1391440Domain d3lc8b_: 3lc8 B: [212793]
        automated match to d1a7lb_
        complexed with gol, mg, pg4
    3. Domain for 3q25:
    4. Domain for 3q27:
    5. Domain for 3q28:
    6. Domains for 3q29:
      1. 1391441Domain d3q29a_: 3q29 A: [184165]
        automated match to d1a7la_
        complexed with gol, mal, so4
      2. 1391442Domain d3q29c_: 3q29 C: [184166]
        automated match to d1a7la_
        complexed with gol, mal, so4
  6. 1391445Escherichia coli [TaxId:83333] [225880] (3 PDB entries)
    1. Domains for 3hst:
      1. 1391448Domain d3hsta_: 3hst A: [211302]
        automated match to d1laxa_
        complexed with edo, mlr, tar
      2. 1391449Domain d3hstc_: 3hst C: [211303]
        automated match to d1laxa_
        complexed with edo, mlr, tar
    2. Domain for 3rum:
    3. Domain for 4jdf:
  7. 1391450Human (Homo sapiens) [TaxId:9606] [189406] (2 PDB entries)
    1. Domains for 2xhd:
      1. 1391451Domain d2xhda_: 2xhd A: [170092]
        automated match to d1lbcb_
        complexed with 7t9, glu, so4
      2. 1391452Domain d2xhdb_: 2xhd B: [170093]
        automated match to d1lbcb_
        complexed with 7t9, glu, so4
    2. Domains for 3r7x:
      1. 1391453Domain d3r7xa_: 3r7x A: [184838]
        automated match to d1mm6a_
        complexed with glu, qsn
      2. 1391454Domain d3r7xb_: 3r7x B: [184839]
        automated match to d1mm6a_
        complexed with glu, qsn
  8. 1391455Norway rat (Rattus norvegicus) [TaxId:10116] [189278] (25 PDB entries)
    1. Domains for 2uxa:
      1. 1391488Domain d2uxaa_: 2uxa A: [168209]
        automated match to d1lb8a_
        complexed with glu, zn
      2. 1391489Domain d2uxab_: 2uxa B: [168210]
        automated match to d1lb8a_
        complexed with glu, zn
      3. 1391490Domain d2uxac_: 2uxa C: [168211]
        automated match to d1lb8a_
        complexed with glu, zn
    2. Domains for 2xx7:
      1. 1391479Domain d2xx7a_: 2xx7 A: [207393]
        automated match to d3tkda_
        complexed with 1nd, glu, so4, zn
      2. 1391480Domain d2xx7b_: 2xx7 B: [207394]
        automated match to d3tkda_
        complexed with 1nd, glu, so4, zn
      3. 1391481Domain d2xx7c_: 2xx7 C: [207395]
        automated match to d3tkda_
        complexed with 1nd, glu, so4, zn
    3. Domain for 3dln:
    4. Domain for 3dp4:
    5. Domain for 3en3:
    6. Domains for 3epe:
      1. 1391470Domain d3epea_: 3epe A: [175143]
        automated match to d1ftja_
        complexed with glu
      2. 1391471Domain d3epeb_: 3epe B: [175144]
        automated match to d1ftja_
        complexed with glu
    7. Domains for 3fas:
      1. 1391456Domain d3fasa_: 3fas A: [175617]
        automated match to d1mm6a_
        complexed with glu, gol, so4
      2. 1391457Domain d3fasb_: 3fas B: [175618]
        automated match to d1mm6a_
        complexed with glu, gol, so4
    8. Domains for 3fat:
      1. 1391467Domain d3fata_: 3fat A: [175619]
        automated match to d1mm6a_
        complexed with acy, amq, gol, so4
      2. 1391468Domain d3fatb_: 3fat B: [175620]
        automated match to d1mm6a_
        complexed with acy, amq, gol, so4
      3. 1391469Domain d3fatc_: 3fat C: [175621]
        automated match to d1mm6a_
        complexed with acy, amq, gol, so4
    9. Domains for 3kei:
      1. 1391474Domain d3keia_: 3kei A: [179304]
        automated match to d1lbca_
        complexed with glu; mutant
      2. 1391475Domain d3keib_: 3kei B: [179305]
        automated match to d1lbca_
        complexed with glu; mutant
    10. Domain for 3kfm:
    11. Domain for 3lsw:
    12. Domain for 3lsx:
    13. Domain for 3m3f:
    14. Domains for 3m3k:
      1. 1391464Domain d3m3ka_: 3m3k A: [180794]
        automated match to d1m5da_
        complexed with glu, zn
      2. 1391465Domain d3m3kc_: 3m3k C: [180795]
        automated match to d1m5da_
        complexed with glu, zn
      3. 1391466Domain d3m3ke_: 3m3k E: [180796]
        automated match to d1m5da_
        complexed with glu, zn
    15. Domain for 3rt6:
    16. Domain for 3rt8:
    17. Domains for 4f1y:
      1. 1391461Domain d4f1ya_: 4f1y A: [195369]
        automated match to d3m3ka_
        complexed with cni, zn
      2. 1391462Domain d4f1yc_: 4f1y C: [195368]
        automated match to d3m3ka_
        complexed with cni, zn
    18. Domain for 4f22:
    19. Domain for 4f29:
    20. Domain for 4f2o:
    21. Domain for 4f2q:
    22. Domains for 4f31:
      1. 1391486Domain d4f31b_: 4f31 B: [195272]
        automated match to d3m3ka_
        complexed with kai, zn; mutant
      2. 1391487Domain d4f31d_: 4f31 D: [195277]
        automated match to d3m3ka_
        complexed with kai, zn; mutant
    23. Domain for 4f39:
    24. Domain for 4f3b:
    25. Domain for 4f3g:
  9. 1391494Pseudomonas aeruginosa [TaxId:287] [195694] (2 PDB entries)
    1. Domains for 3ttk:
      1. 1391497Domain d3ttka_: 3ttk A: [200879]
        automated match to d3ttkc_
      2. 1391498Domain d3ttkb_: 3ttk B: [195696]
        automated match to d1a99a_
      3. 1391499Domain d3ttkc_: 3ttk C: [195695]
        automated match to d1a99a_
    2. Domains for 3ttm:
      1. 1391495Domain d3ttma_: 3ttm A: [195698]
        automated match to d1a99a_
        complexed with put
      2. 1391496Domain d3ttmb_: 3ttm B: [195697]
        automated match to d1a99a_
        complexed with put
  10. 1391500Salmonella enterica [TaxId:99287] [227690] (1 PDB entry)
  11. 1391503Sphingomonas sp. [TaxId:90322] [186866] (5 PDB entries)
    1. Domain for 1y3p:
    2. Domain for 1y3q:
    3. Domain for 3vlu:
    4. Domain for 3vlv:
    5. Domains for 3vlw:
      1. 1391507Domain d3vlwa_: 3vlw A: [186515]
        automated match to d1j1na_
        complexed with ca, gol
      2. 1391508Domain d3vlwb_: 3vlw B: [186516]
        automated match to d1j1na_
        complexed with ca, gol
  12. 1391510Unidentified prokaryotic [TaxId:2725] [228734] (3 PDB entries)
    1. Domains for 3w9v:
      1. 1391511Domain d3w9va_: 3w9v A: [228737]
        automated match to d2v3qa1
        complexed with gol, po4
      2. 1391512Domain d3w9vb_: 3w9v B: [233930]
        automated match to d3w9wa_
        complexed with gol, po4
    2. Domains for 3w9w:
      1. 1391514Domain d3w9wa_: 3w9w A: [228735]
        automated match to d2v3qa1
        complexed with gol, po4
      2. 1391515Domain d3w9wb_: 3w9w B: [228736]
        automated match to d2v3qa1
        complexed with gol, po4
    3. Domain for 4m1v:
  13. 1391516Yersinia pestis [TaxId:214092] [188272] (2 PDB entries)
    1. Domains for 2z22:
      1. 1391517Domain d2z22a_: 2z22 A: [170991]
        automated match to d1ixha_
        complexed with po4
      2. 1391518Domain d2z22x_: 2z22 X: [170992]
        automated match to d1ixha_
        complexed with po4
    2. Domain for 2z23:

More info for Protein automated matches from c.94.1.1: Phosphate binding protein-like

Timeline for Protein automated matches from c.94.1.1: Phosphate binding protein-like: