Lineage for Protein: automated matches

  1. Root: SCOPe 2.07
  2. 2299346Class a: All alpha proteins [46456] (289 folds)
  3. 2345955Fold a.133: Phospholipase A2, PLA2 [48618] (1 superfamily)
    common core: 2 helices, disulfide-linked, and a calcium-binding loop
  4. 2345956Superfamily a.133.1: Phospholipase A2, PLA2 [48619] (4 families) (S)
  5. 2345961Family a.133.1.2: Vertebrate phospholipase A2 [48623] (3 proteins)
    automatically mapped to Pfam PF00068
  6. 2346343Protein automated matches [190139] (27 species)
    not a true protein

Species:

  1. 2346344Atropoides nummifer [TaxId:44730] [187413] (1 PDB entry)
  2. 2346346Bothrops asper [TaxId:8722] [339854] (1 PDB entry)
  3. 2346349Bothrops brazili [TaxId:157546] [195180] (2 PDB entries)
    1. Domains for 4dcf:
      1. 2346352Domain d4dcfa_: 4dcf A: [195185]
        automated match to d1xxsa_
        complexed with pg4
      2. 2346353Domain d4dcfb_: 4dcf B: [195183]
        automated match to d1xxsa_
        complexed with pg4
      3. 2346354Domain d4dcfc_: 4dcf C: [195181]
        automated match to d1xxsa_
        complexed with pg4
      4. 2346355Domain d4dcfd_: 4dcf D: [195184]
        automated match to d1xxsa_
        complexed with pg4
    2. Domains for 4k09:
      1. 2346350Domain d4k09a_: 4k09 A: [229105]
        automated match to d3i03a_
      2. 2346351Domain d4k09b_: 4k09 B: [229106]
        automated match to d3i03a_
  4. 2346356Bothrops moojeni [TaxId:98334] [188126] (13 PDB entries)
    1. Domains for 1xxs:
      1. 2346357Domain d1xxsa_: 1xxs A: [162122]
        automated match to d1clpa_
        complexed with so4, ste
      2. 2346358Domain d1xxsb_: 1xxs B: [162123]
        automated match to d1clpa_
        complexed with so4, ste
    2. Domains for 3t0r:
      1. 2346383Domain d3t0ra_: 3t0r A: [194872]
        automated match to d2q2ja_
        complexed with pe4
      2. 2346384Domain d3t0rb_: 3t0r B: [194871]
        automated match to d2q2ja_
        complexed with pe4
      3. 2346385Domain d3t0rc_: 3t0r C: [194870]
        automated match to d2q2ja_
        complexed with pe4
      4. 2346386Domain d3t0rd_: 3t0r D: [194873]
        automated match to d2q2ja_
        complexed with pe4
    3. Domains for 4kf3:
      1. 2346365Domain d4kf3a_: 4kf3 A: [224281]
        automated match to d1xxsa_
        complexed with ipa, pe4
      2. 2346366Domain d4kf3b_: 4kf3 B: [224282]
        automated match to d1xxsa_
        complexed with ipa, pe4
    4. Domains for 4yv5:
      1. 2346375Domain d4yv5a_: 4yv5 A: [278229]
        automated match to d4kf3a_
        complexed with 1pe, pe4, so4, svr
      2. 2346376Domain d4yv5b_: 4yv5 B: [278230]
        automated match to d4kf3a_
        complexed with 1pe, pe4, so4, svr
    5. Domains for 6b80:
      1. 2346377Domain d6b80a_: 6b80 A: [358251]
        automated match to d4kf3a_
        complexed with myr, pe4, so4
      2. 2346378Domain d6b80b_: 6b80 B: [358282]
        automated match to d4kf3a_
        complexed with myr, pe4, so4
    6. Domains for 6b81:
      1. 2346371Domain d6b81a_: 6b81 A: [358245]
        automated match to d4kf3a_
        complexed with oca, so4
      2. 2346372Domain d6b81b_: 6b81 B: [358197]
        automated match to d4kf3a_
        complexed with oca, so4
    7. Domains for 6b83:
      1. 2346369Domain d6b83a_: 6b83 A: [358199]
        automated match to d1xxsa_
        complexed with 6na, so4
      2. 2346370Domain d6b83b_: 6b83 B: [358198]
        automated match to d1xxsa_
        complexed with 6na, so4
    8. Domains for 6b84:
      1. 2346379Domain d6b84a_: 6b84 A: [358192]
        automated match to d4kf3a_
        complexed with so4
      2. 2346380Domain d6b84b_: 6b84 B: [358195]
        automated match to d4kf3a_
        complexed with so4
    9. Domains for 6ce2:
      1. 2346381Domain d6ce2a_: 6ce2 A: [355168]
        automated match to d3t0ra_
        complexed with pe4, svr
      2. 2346382Domain d6ce2b_: 6ce2 B: [355100]
        automated match to d3t0ra_
        complexed with pe4, svr
    10. Domains for 6mqd:
      1. 2346363Domain d6mqda_: 6mqd A: [366598]
        automated match to d4kf3a_
        complexed with roa
      2. 2346364Domain d6mqdb_: 6mqd B: [366568]
        automated match to d4kf3a_
        complexed with roa
    11. Domains for 6mqf:
      1. 2346367Domain d6mqfa_: 6mqf A: [366596]
        automated match to d4kf3a_
        complexed with ain, dms
      2. 2346368Domain d6mqfb_: 6mqf B: [366605]
        automated match to d4kf3a_
        complexed with ain, dms
    12. Domains for 6pwh:
      1. 2346373Domain d6pwha_: 6pwh A: [377949]
        automated match to d4kf3a_
        complexed with dms, vrd
      2. 2346374Domain d6pwhb_: 6pwh B: [377956]
        automated match to d4kf3a_
        complexed with dms, vrd
    13. Domains for 7lye:
      1. 2346359Domain d7lyea_: 7lye A: [405551]
        automated match to d4dcfa_
        complexed with pe4, vrd
      2. 2346360Domain d7lyeb_: 7lye B: [405529]
        automated match to d4dcfa_
        complexed with pe4, vrd
      3. 2346361Domain d7lyec_: 7lye C: [405573]
        automated match to d4dcfa_
        complexed with pe4, vrd
      4. 2346362Domain d7lyed_: 7lye D: [405598]
        automated match to d4dcfa_
        complexed with pe4, vrd
  5. 2346387Bothrops pirajai [TaxId:113192] [188615] (4 PDB entries)
    1. Domains for 2ok9:
      1. 2346394Domain d2ok9a_: 2ok9 A: [166726]
        automated match to d1qlla_
        complexed with ipa, pbp
      2. 2346395Domain d2ok9b_: 2ok9 B: [166727]
        automated match to d1qlla_
        complexed with ipa, pbp
    2. Domains for 3qnl:
      1. 2346388Domain d3qnla_: 3qnl A: [191943]
        automated match to d2ok9a_
        complexed with ipa, p33, roa
      2. 2346389Domain d3qnlb_: 3qnl B: [191944]
        automated match to d2ok9a_
        complexed with ipa, p33, roa
    3. Domains for 4yu7:
      1. 2346390Domain d4yu7a_: 4yu7 A: [275759]
        automated match to d3qnla_
        complexed with dhc, pe4, so4
      2. 2346391Domain d4yu7b_: 4yu7 B: [275756]
        automated match to d3qnla_
        complexed with dhc, pe4, so4
    4. Domains for 4yz7:
      1. 2346392Domain d4yz7a_: 4yz7 A: [275763]
        automated match to d3qnla_
        complexed with 9ar, pe4, so4
      2. 2346393Domain d4yz7b_: 4yz7 B: [275762]
        automated match to d3qnla_
        complexed with 9ar, pe4, so4
  6. 2346396Bungarus caeruleus [TaxId:132961] [187166] (1 PDB entry)
  7. 2346398Chinese cobra (Naja atra) [TaxId:8656] [187966] (1 PDB entry)
  8. 2346400Crotalus durissus [TaxId:8732] [188410] (3 PDB entries)
    1. Domains for 2qog:
      1. 2346408Domain d2qoga_: 2qog A: [167741]
        automated match to d1bjja_
        complexed with ca
      2. 2346409Domain d2qogb_: 2qog B: [167742]
        automated match to d1a2aa_
        complexed with ca
      3. 2346410Domain d2qogc_: 2qog C: [167743]
        automated match to d1a2aa_
        complexed with ca
      4. 2346411Domain d2qogd_: 2qog D: [167744]
        automated match to d1bjja_
        complexed with ca
    2. Domain for 3r0l:
    3. Domains for 6tmy:
      1. 2346402Domain d6tmya_: 6tmy A: [395813]
        automated match to d3r0ld_
        complexed with cl, na, pg4
      2. 2346403Domain d6tmyb_: 6tmy B: [395882]
        automated match to d3r0ld_
        complexed with cl, na, pg4
      3. 2346404Domain d6tmyc_: 6tmy C: [395926]
        automated match to d3r0ld_
        complexed with cl, na, pg4
      4. 2346405Domain d6tmyd_: 6tmy D: [395853]
        automated match to d3r0ld_
        complexed with cl, na, pg4
      5. 2346406Domain d6tmye_: 6tmy E: [395818]
        automated match to d3r0ld_
        complexed with cl, na, pg4
      6. 2346407Domain d6tmyf_: 6tmy F: [395776]
        automated match to d3r0ld_
        complexed with cl, na, pg4
  9. 2346412Daboia russelli [TaxId:97228] [188715] (1 PDB entry)
  10. 2346414Daboia russellii [TaxId:31159] [188906] (1 PDB entry)
  11. 2346416Daboia russellii [TaxId:343250] [187787] (1 PDB entry)
  12. 2346425Daboia russellii [TaxId:97228] [186865] (27 PDB entries)
    1. Domains for 1y38:
      1. 2346439Domain d1y38a_: 1y38 A: [122580]
        automated match to d1tgma_
        complexed with g3p, na, pge, so4
      2. 2346440Domain d1y38b_: 1y38 B: [122581]
        automated match to d1tgma_
        complexed with g3p, na, pge, so4
    2. Domain for 1zr8:
    3. Domain for 1zwp:
    4. Domain for 1zyx:
    5. Domain for 2arm:
    6. Domain for 2b17:
    7. Domain for 2dpz:
    8. Domain for 2fnx:
    9. Domain for 2g58:
    10. Domain for 2o1n:
    11. Domain for 2oli:
    12. Domain for 2otf:
    13. Domain for 2oth:
    14. Domain for 2oub:
    15. Domain for 2oyf:
    16. Domain for 2pb8:
    17. Domain for 2pmj:
    18. Domain for 2pvt:
    19. Domain for 2pws:
    20. Domain for 2pyc:
    21. Domain for 2q1p:
    22. Domain for 2qhw:
    23. Domain for 2qu9:
    24. Domain for 2que:
    25. Domain for 2qvd:
    26. Domain for 2zbh:
    27. Domains for 3cbi:
      1. 2346450Domain d3cbia_: 3cbi A: [156155]
        automated match to d1tjka_
        protein/RNA complex; complexed with ajm, ann
      2. 2346451Domain d3cbib_: 3cbi B: [156156]
        automated match to d1tjka_
        protein/RNA complex; complexed with ajm, ann
      3. 2346452Domain d3cbic_: 3cbi C: [156157]
        automated match to d1tjka_
        protein/RNA complex; complexed with ajm, ann
      4. 2346453Domain d3cbid_: 3cbi D: [156158]
        automated match to d1tjka_
        protein/RNA complex; complexed with ajm, ann
  13. 2346457Halys viper (Agkistrodon halys) [TaxId:8714] [194477] (1 PDB entry)
  14. 2346462Human (Homo sapiens) [TaxId:9606] [260458] (13 PDB entries)
    1. Domains for 4uy1:
      1. 2346473Domain d4uy1a_: 4uy1 A: [260459]
        automated match to d1le6a_
        complexed with 1pe, ca, dms, peg, tjm
      2. 2346474Domain d4uy1b_: 4uy1 B: [260839]
        automated match to d1le6a_
        complexed with 1pe, ca, dms, peg, tjm
    2. Domains for 5g3n:
      1. 2346467Domain d5g3na1: 5g3n A:1-124 [322528]
        Other proteins in same PDB: d5g3na2, d5g3nb2
        automated match to d1n29a_
        complexed with ca, fmt, x28
      2. 2346468Domain d5g3nb1: 5g3n B:1-124 [322574]
        Other proteins in same PDB: d5g3na2, d5g3nb2
        automated match to d1n29a_
        complexed with ca, fmt, x28
    3. Domains for 5owc:
      1. 2346464Domain d5owca_: 5owc A: [355576]
        automated match to d4uy1a_
        complexed with ayz, ca, dms, peg
      2. 2346465Domain d5owcb_: 5owc B: [355548]
        automated match to d4uy1a_
        complexed with ayz, ca, dms, peg
    4. Domain for 5wzm:
    5. Domain for 5wzo:
    6. Domain for 5wzs:
    7. Domain for 5wzt:
    8. Domain for 5wzu:
    9. Domain for 5wzv:
    10. Domain for 5wzw:
    11. Domain for 5y5e:
    12. Domain for 6kqu:
    13. Domains for 6q42:
      1. 2346469Domain d6q42a_: 6q42 A: [383661]
        automated match to d3eloa_
        complexed with cl
      2. 2346470Domain d6q42b_: 6q42 B: [383770]
        automated match to d3eloa_
        complexed with cl
  15. 2346480Indian cobra (Naja naja) [TaxId:35670] [189291] (2 PDB entries)
    1. Domain for 1lff:
    2. Domain for 2wq5:
  16. 2346483Jararacussu (Bothrops jararacussu) [TaxId:8726] [186913] (8 PDB entries)
    1. Domains for 1z76:
      1. 2346487Domain d1z76a_: 1z76 A: [162394]
        automated match to d1u73a_
        complexed with pbp
      2. 2346488Domain d1z76b_: 1z76 B: [162395]
        automated match to d1u73a_
        complexed with pbp
    2. Domain for 1zl7:
    3. Domain for 1zlb:
    4. Domains for 2h8i:
      1. 2346496Domain d2h8ia_: 2h8i A: [165008]
        automated match to d1pa0a_
        complexed with peg
      2. 2346497Domain d2h8ib_: 2h8i B: [165009]
        automated match to d1pa0a_
        complexed with peg
    5. Domains for 2oqd:
      1. 2346492Domain d2oqda_: 2oqd A: [166824]
        automated match to d1gmza_
      2. 2346493Domain d2oqdb_: 2oqd B: [166825]
        automated match to d1gmza_
    6. Domains for 3iq3:
      1. 2346485Domain d3iq3a_: 3iq3 A: [178519]
        automated match to d1pa0a_
        complexed with pe4, so4
      2. 2346486Domain d3iq3b_: 3iq3 B: [178520]
        automated match to d1pa0a_
        complexed with pe4, so4
    7. Domains for 3jr8:
      1. 2346490Domain d3jr8a_: 3jr8 A: [178718]
        automated match to d1gmza_
        complexed with ca
      2. 2346491Domain d3jr8b_: 3jr8 B: [178719]
        automated match to d1gmza_
        complexed with ca
    8. Domains for 6dik:
      1. 2346494Domain d6dika_: 6dik A: [358218]
        automated match to d3iq3a_
        complexed with bct, eoh, gkp, so4
      2. 2346495Domain d6dikb_: 6dik B: [358217]
        automated match to d3iq3a_
        complexed with bct, eoh, gkp, so4
  17. 2346498Micropechis ikaheka [TaxId:66188] [188000] (1 PDB entry)
  18. 2346503Naja sagittifera [TaxId:195058] [188129] (2 PDB entries)
    1. Domains for 1y75:
      1. 2346505Domain d1y75a_: 1y75 A: [162166]
        automated match to d1owsa_
        complexed with nag, zn
      2. 2346506Domain d1y75b_: 1y75 B: [162167]
        automated match to d1owsb_
        complexed with nag, zn
    2. Domain for 1yxh:
  19. 2346507Pig (Sus scrofa) [TaxId:9823] [186957] (9 PDB entries)
    1. Domain for 2azy:
    2. Domains for 3fvi:
      1. 2346515Domain d3fvia_: 3fvi A: [176076]
        automated match to d1hn4a_
        complexed with ca, cl, na, osf
      2. 2346516Domain d3fvib_: 3fvi B: [176077]
        automated match to d1hn4a_
        complexed with ca, cl, na, osf
      3. 2346517Domain d3fvic_: 3fvi C: [176078]
        automated match to d1hn4a_
        complexed with ca, cl, na, osf
      4. 2346518Domain d3fvid_: 3fvi D: [176079]
        automated match to d1hn4a_
        complexed with ca, cl, na, osf
    3. Domain for 3fvj:
    4. Domain for 3hsw:
    5. Domain for 3l30:
    6. Domain for 3o4m:
    7. Domain for 3qlm:
    8. Domain for 4dbk:
    9. Domain for 4g5i:
  20. 2346520Protobothrops flavoviridis [TaxId:88087] [362001] (1 PDB entry)
  21. 2346525Pseudechis australis [TaxId:8670] [193996] (1 PDB entry)
  22. 2346528Saw-scaled viper (Echis carinatus) [TaxId:40353] [188231] (4 PDB entries)
    1. Domains for 2qhd:
      1. 2346537Domain d2qhda_: 2qhd A: [167595]
        automated match to d1cl5a_
        complexed with dao
      2. 2346538Domain d2qhdb_: 2qhd B: [167596]
        automated match to d1cl5a_
        complexed with dao
    2. Domain for 2qhe:
    3. Domains for 2qhg:
      1. 2346529Domain d2qhga_: 2qhg A: [304410]
        automated match to d2qhea_
        complexed with svr
      2. 2346530Domain d2qhgb_: 2qhg B: [304411]
        automated match to d2qhea_
        complexed with svr
      3. 2346531Domain d2qhgc_: 2qhg C: [304412]
        automated match to d2qhea_
        complexed with svr
      4. 2346532Domain d2qhgd_: 2qhg D: [304413]
        automated match to d2qhea_
        complexed with svr
      5. 2346533Domain d2qhge_: 2qhg E: [304414]
        automated match to d2qhea_
        complexed with svr
      6. 2346534Domain d2qhgf_: 2qhg F: [304415]
        automated match to d2qhea_
        complexed with svr
      7. 2346535Domain d2qhgg_: 2qhg G: [304416]
        automated match to d2qhea_
        complexed with svr
      8. 2346536Domain d2qhgh_: 2qhg H: [304417]
        automated match to d2qhea_
        complexed with svr
    4. Domains for 3bjw:
      1. 2346540Domain d3bjwa_: 3bjw A: [172669]
        automated match to d1cl5a_
        complexed with svr
      2. 2346541Domain d3bjwb_: 3bjw B: [172670]
        automated match to d1cl5a_
        complexed with svr
      3. 2346542Domain d3bjwc_: 3bjw C: [172671]
        automated match to d1cl5a_
        complexed with svr
      4. 2346543Domain d3bjwd_: 3bjw D: [172672]
        automated match to d1cl5a_
        complexed with svr
      5. 2346544Domain d3bjwe_: 3bjw E: [172673]
        automated match to d1cl5a_
        complexed with svr
      6. 2346545Domain d3bjwf_: 3bjw F: [172674]
        automated match to d1cl5a_
        complexed with svr
      7. 2346546Domain d3bjwg_: 3bjw G: [172675]
        automated match to d1cl5a_
        complexed with svr
      8. 2346547Domain d3bjwh_: 3bjw H: [172676]
        automated match to d1cl5a_
        complexed with svr
  23. 2346548Vipera ammodytes [TaxId:73841] [195494] (1 PDB entry)
  24. 2346557Vipera ammodytes [TaxId:8705] [188519] (3 PDB entries)
    1. Domain for 3dih:
    2. Domain for 3g8g:
    3. Domain for 3g8h:
  25. 2346561Vipera nikolskii [TaxId:110206] [187834] (1 PDB entry)
  26. 2346564Viridovipera stejnegeri [TaxId:39682] [194681] (3 PDB entries)
    1. Domains for 4h0q:
      1. 2346568Domain d4h0qa_: 4h0q A: [307482]
        automated match to d4rfpa_
        complexed with peg
      2. 2346569Domain d4h0qb_: 4h0q B: [307483]
        automated match to d4rfpa_
        complexed with peg
    2. Domains for 4h0s:
      1. 2346565Domain d4h0sa_: 4h0s A: [222308]
        automated match to d1jiaa_
        complexed with na
      2. 2346566Domain d4h0sb_: 4h0s B: [222309]
        automated match to d1jiaa_
        complexed with na
      3. 2346567Domain d4h0sc_: 4h0s C: [222310]
        automated match to d1jiaa_
        complexed with na
    3. Domains for 4rfp:
      1. 2346570Domain d4rfpa_: 4rfp A: [263862]
        complexed with peg
      2. 2346571Domain d4rfpb_: 4rfp B: [260426]
        automated match to d4h0qa_
        complexed with peg
  27. 2346572Zhaoermia mangshanensis [TaxId:242058] [188379] (1 PDB entry)

More info for Protein automated matches from a.133.1.2: Vertebrate phospholipase A2

Timeline for Protein automated matches from a.133.1.2: Vertebrate phospholipase A2: