Lineage for Protein: automated matches

  1. Root: SCOPe 2.08
  2. Class d: Alpha and beta proteins (a+b) [53931] (396 folds)
  3. Fold d.166: ADP-ribosylation [56398] (1 superfamily)
    unusual fold
  4. Superfamily d.166.1: ADP-ribosylation [56399] (8 families) (S)
  5. Family d.166.1.1: ADP-ribosylating toxins [56400] (10 proteins)
  6. Protein automated matches [190133] (8 species)
    not a true protein

Species:

  1. Anthrax bacillus (Bacillus anthracis) [TaxId:1392] [234339] (15 PDB entries)
    1. Domain for 4dv8:
    2. Domain for 4pkq:
    3. Domain for 4pkr:
    4. Domain for 4pks:
    5. Domain for 4pkt:
    6. Domain for 4pku:
    7. Domain for 4pkv:
    8. Domain for 4pkw:
    9. Domain for 4wf6:
    10. Domain for 4xm6:
    11. Domain for 4xm7:
    12. Domain for 4xm8:
    13. Domain for 5d1s:
    14. Domain for 5d1t:
    15. Domain for 5d1u:
  2. Bordetella pertussis [TaxId:520] [386834] (1 PDB entry)
  3. Clostridium botulinum [346391] (1 PDB entry)
  4. Clostridium botulinum [TaxId:1491] [187018] (9 PDB entries)
    1. Domain for 2bov:
    2. Domains for 2c89:
      1. Domain d2c89a_: 2c89 A: [130095]
        automated match to d1g24a_
        complexed with so4
      2. Domain d2c89b_: 2c89 B: [130096]
        automated match to d1g24a_
        complexed with so4
      3. Domain d2c89c_: 2c89 C: [130097]
        automated match to d1g24a_
        complexed with so4
      4. Domain d2c89d_: 2c89 D: [130098]
        automated match to d1g24a_
        complexed with so4
    3. Domains for 2c8a:
      1. Domain d2c8aa_: 2c8a A: [130099]
        automated match to d1g24a_
        complexed with nca, so4
      2. Domain d2c8ab_: 2c8a B: [130100]
        automated match to d1g24a_
        complexed with nca, so4
      3. Domain d2c8ac_: 2c8a C: [130101]
        automated match to d1g24a_
        complexed with nca, so4
      4. Domain d2c8ad_: 2c8a D: [130102]
        automated match to d1g24a_
        complexed with nca, so4
    4. Domains for 2c8c:
      1. Domain d2c8ca_: 2c8c A: [163300]
        automated match to d1g24a_
        complexed with adp, nad; mutant
      2. Domain d2c8cb_: 2c8c B: [163301]
        automated match to d1g24a_
        complexed with adp, nad; mutant
      3. Domain d2c8cc_: 2c8c C: [163302]
        automated match to d1g24a_
        complexed with adp, nad; mutant
      4. Domain d2c8cd_: 2c8c D: [163303]
        automated match to d1g24a_
        complexed with adp, nad; mutant
    5. Domains for 2c8d:
      1. Domain d2c8da_: 2c8d A: [163304]
        automated match to d1g24a_
        complexed with so4; mutant
      2. Domain d2c8db_: 2c8d B: [163305]
        automated match to d1g24a_
        complexed with so4; mutant
      3. Domain d2c8dc_: 2c8d C: [163306]
        automated match to d1g24a_
        complexed with so4; mutant
      4. Domain d2c8dd_: 2c8d D: [163307]
        automated match to d1g24a_
        complexed with so4; mutant
    6. Domains for 2c8e:
      1. Domain d2c8ee_: 2c8e E: [163308]
        automated match to d1g24a_
        complexed with so4; mutant
      2. Domain d2c8ef_: 2c8e F: [163309]
        automated match to d1g24a_
        complexed with so4; mutant
      3. Domain d2c8eg_: 2c8e G: [163310]
        automated match to d1g24a_
        complexed with so4; mutant
    7. Domains for 2c8f:
      1. Domain d2c8fe_: 2c8f E: [163311]
        automated match to d1g24a_
        complexed with nad; mutant
      2. Domain d2c8ff_: 2c8f F: [163312]
        automated match to d1g24a_
        complexed with nad; mutant
      3. Domain d2c8fg_: 2c8f G: [163313]
        automated match to d1g24a_
        complexed with nad; mutant
    8. Domains for 2c8g:
      1. Domain d2c8ga_: 2c8g A: [163314]
        automated match to d1g24a_
        complexed with so4; mutant
      2. Domain d2c8gb_: 2c8g B: [163315]
        automated match to d1g24a_
        complexed with so4; mutant
      3. Domain d2c8gc_: 2c8g C: [163316]
        automated match to d1g24a_
        complexed with so4; mutant
      4. Domain d2c8gd_: 2c8g D: [163317]
        automated match to d1g24a_
        complexed with so4; mutant
    9. Domains for 2c8h:
      1. Domain d2c8ha_: 2c8h A: [163318]
        automated match to d1g24a_
        complexed with nad, so4; mutant
      2. Domain d2c8hb_: 2c8h B: [163319]
        automated match to d1g24a_
        complexed with nad, so4; mutant
      3. Domain d2c8hc_: 2c8h C: [163320]
        automated match to d1g24a_
        complexed with nad, so4; mutant
      4. Domain d2c8hd_: 2c8h D: [163321]
        automated match to d1g24a_
        complexed with nad, so4; mutant
  5. Clostridium botulinum [TaxId:29342] [186934] (1 PDB entry)
  6. Clostridium perfringens [TaxId:1502] [234554] (8 PDB entries)
    1. Domains for 4gy2:
      1. Domain d4gy2a1: 4gy2 A:3-209 [234555]
        Other proteins in same PDB: d4gy2b1, d4gy2b2
        automated match to d1giqa1
        complexed with atp, ca, lar, po4
      2. Domain d4gy2a2: 4gy2 A:210-413 [234556]
        Other proteins in same PDB: d4gy2b1, d4gy2b2
        automated match to d1giqa2
        complexed with atp, ca, lar, po4
    2. Domains for 4h03:
      1. Domain d4h03a1: 4h03 A:1-209 [240175]
        Other proteins in same PDB: d4h03a3, d4h03b1, d4h03b2
        automated match to d4gy2a1
        complexed with atp, ca, edo, lar, nad, po4
      2. Domain d4h03a2: 4h03 A:210-413 [240176]
        Other proteins in same PDB: d4h03a3, d4h03b1, d4h03b2
        automated match to d4gy2a2
        complexed with atp, ca, edo, lar, nad, po4
    3. Domains for 4h0t:
      1. Domain d4h0ta1: 4h0t A:1-209 [240177]
        Other proteins in same PDB: d4h0ta3, d4h0tb1, d4h0tb2
        automated match to d4gy2a1
        complexed with ar6, atp, ca, edo, lar, po4
      2. Domain d4h0ta2: 4h0t A:210-413 [240178]
        Other proteins in same PDB: d4h0ta3, d4h0tb1, d4h0tb2
        automated match to d4gy2a2
        complexed with ar6, atp, ca, edo, lar, po4
    4. Domains for 4h0v:
      1. Domain d4h0va1: 4h0v A:1-209 [234593]
        Other proteins in same PDB: d4h0vb1, d4h0vb2
        automated match to d1giqa1
        complexed with atp, ca, edo, lar, nad, po4
      2. Domain d4h0va2: 4h0v A:210-413 [234594]
        Other proteins in same PDB: d4h0vb1, d4h0vb2
        automated match to d1giqa2
        complexed with atp, ca, edo, lar, nad, po4
    5. Domains for 4h0x:
      1. Domain d4h0xa1: 4h0x A:1-209 [234591]
        Other proteins in same PDB: d4h0xb1, d4h0xb2
        automated match to d1giqa1
        complexed with atp, ca, edo, lar, nad, po4
      2. Domain d4h0xa2: 4h0x A:210-413 [234592]
        Other proteins in same PDB: d4h0xb1, d4h0xb2
        automated match to d1giqa2
        complexed with atp, ca, edo, lar, nad, po4
    6. Domains for 4h0y:
      1. Domain d4h0ya1: 4h0y A:1-209 [234597]
        Other proteins in same PDB: d4h0yb1, d4h0yb2
        automated match to d1giqa1
        complexed with atp, ca, edo, lar, nad, po4
      2. Domain d4h0ya2: 4h0y A:210-413 [234598]
        Other proteins in same PDB: d4h0yb1, d4h0yb2
        automated match to d1giqa2
        complexed with atp, ca, edo, lar, nad, po4
    7. Domains for 6klo:
      1. Domain d6kloh1: 6klo H:18-209 [378956]
        automated match to d1giqa1
        complexed with ca
      2. Domain d6kloh2: 6klo H:210-413 [378957]
        automated match to d1giqa2
        complexed with ca
    8. Domains for 6klw:
      1. Domain d6klwh1: 6klw H:18-209 [378949]
        automated match to d1giqa1
        complexed with ca
      2. Domain d6klwh2: 6klw H:210-413 [378950]
        automated match to d1giqa2
        complexed with ca
  7. Pseudomonas aeruginosa [TaxId:287] [186856] (5 PDB entries)
    1. Domains for 1xk9:
      1. Domain d1xk9a_: 1xk9 A: [122074]
        automated match to d1dmaa_
        complexed with p34
      2. Domain d1xk9b_: 1xk9 B: [122075]
        automated match to d1dmaa_
        complexed with p34
    2. Domains for 1zm3:
      1. Domain d1zm3b_: 1zm3 B: [125303]
        Other proteins in same PDB: d1zm3a1, d1zm3a2, d1zm3a3, d1zm3a4, d1zm3a5, d1zm3c1, d1zm3c2, d1zm3c3, d1zm3c4, d1zm3c5, d1zm3e1, d1zm3e2, d1zm3e3, d1zm3e4, d1zm3e5
        automated match to d1zm9b_
      2. Domain d1zm3d_: 1zm3 D: [125309]
        Other proteins in same PDB: d1zm3a1, d1zm3a2, d1zm3a3, d1zm3a4, d1zm3a5, d1zm3c1, d1zm3c2, d1zm3c3, d1zm3c4, d1zm3c5, d1zm3e1, d1zm3e2, d1zm3e3, d1zm3e4, d1zm3e5
        automated match to d1zm9b_
      3. Domain d1zm3f_: 1zm3 F: [125315]
        Other proteins in same PDB: d1zm3a1, d1zm3a2, d1zm3a3, d1zm3a4, d1zm3a5, d1zm3c1, d1zm3c2, d1zm3c3, d1zm3c4, d1zm3c5, d1zm3e1, d1zm3e2, d1zm3e3, d1zm3e4, d1zm3e5
        automated match to d1zm9b_
    3. Domains for 1zm4:
      1. Domain d1zm4b_: 1zm4 B: [125321]
        Other proteins in same PDB: d1zm4a1, d1zm4a2, d1zm4a3, d1zm4a4, d1zm4a5, d1zm4c1, d1zm4c2, d1zm4c3, d1zm4c4, d1zm4c5, d1zm4e1, d1zm4e2, d1zm4e3, d1zm4e4, d1zm4e5
        automated match to d1aera_
        complexed with tad
      2. Domain d1zm4d_: 1zm4 D: [125327]
        Other proteins in same PDB: d1zm4a1, d1zm4a2, d1zm4a3, d1zm4a4, d1zm4a5, d1zm4c1, d1zm4c2, d1zm4c3, d1zm4c4, d1zm4c5, d1zm4e1, d1zm4e2, d1zm4e3, d1zm4e4, d1zm4e5
        automated match to d1aera_
        complexed with tad
      3. Domain d1zm4f_: 1zm4 F: [125333]
        Other proteins in same PDB: d1zm4a1, d1zm4a2, d1zm4a3, d1zm4a4, d1zm4a5, d1zm4c1, d1zm4c2, d1zm4c3, d1zm4c4, d1zm4c5, d1zm4e1, d1zm4e2, d1zm4e3, d1zm4e4, d1zm4e5
        automated match to d1aera_
        complexed with tad
    4. Domains for 1zm9:
      1. Domain d1zm9b_: 1zm9 B: [125341]
        Other proteins in same PDB: d1zm9a1, d1zm9a2, d1zm9a3, d1zm9a4, d1zm9a5, d1zm9c1, d1zm9c2, d1zm9c3, d1zm9c4, d1zm9c5, d1zm9e1, d1zm9e2, d1zm9e3, d1zm9e4, d1zm9e5
        automated match to d1aera_
        complexed with p34
      2. Domain d1zm9d_: 1zm9 D: [125347]
        Other proteins in same PDB: d1zm9a1, d1zm9a2, d1zm9a3, d1zm9a4, d1zm9a5, d1zm9c1, d1zm9c2, d1zm9c3, d1zm9c4, d1zm9c5, d1zm9e1, d1zm9e2, d1zm9e3, d1zm9e4, d1zm9e5
        automated match to d1aera_
        complexed with p34
      3. Domain d1zm9f_: 1zm9 F: [125353]
        Other proteins in same PDB: d1zm9a1, d1zm9a2, d1zm9a3, d1zm9a4, d1zm9a5, d1zm9c1, d1zm9c2, d1zm9c3, d1zm9c4, d1zm9c5, d1zm9e1, d1zm9e2, d1zm9e3, d1zm9e4, d1zm9e5
        automated match to d1aera_
        complexed with p34
    5. Domain for 6edg:
  8. Clostridioides difficile [TaxId:1496] [420073] (3 PDB entries)
    1. Domains for 6x6v:
      1. Domain d6x6vd2: 6x6v D:217-420 [417033]
        Other proteins in same PDB: d6x6va1, d6x6vb1, d6x6vc1, d6x6vd1
        automated match to d1giqa2
        complexed with ndp
      2. Domain d6x6vc2: 6x6v C:217-420 [417031]
        Other proteins in same PDB: d6x6va1, d6x6vb1, d6x6vc1, d6x6vd1
        automated match to d1giqa2
        complexed with ndp
      3. Domain d6x6vb2: 6x6v B:217-420 [417029]
        Other proteins in same PDB: d6x6va1, d6x6vb1, d6x6vc1, d6x6vd1
        automated match to d1giqa2
        complexed with ndp
      4. Domain d6x6va2: 6x6v A:217-420 [417027]
        Other proteins in same PDB: d6x6va1, d6x6vb1, d6x6vc1, d6x6vd1
        automated match to d1giqa2
        complexed with ndp
    2. Domain for 6x6w:
    3. Domains for 6x6x:
      1. Domain d6x6xb2: 6x6x B:217-420 [417039]
        Other proteins in same PDB: d6x6xa1, d6x6xb1
        automated match to d1giqa2
        complexed with dms, utg, zn
      2. Domain d6x6xa2: 6x6x A:217-420 [417037]
        Other proteins in same PDB: d6x6xa1, d6x6xb1
        automated match to d1giqa2
        complexed with dms, utg, zn

More info for Protein automated matches from d.166.1.1: ADP-ribosylating toxins

Timeline for Protein automated matches from d.166.1.1: ADP-ribosylating toxins: