Species:

1. Aspergillus oryzae [TaxId:510516] [231884] (1 PDB entry)

   • Domain for 3c97:

     • Domain d3c97a_: 3c97 A: [231885] automated match to d3eoda_

2. Aurantimonas sp. [TaxId:314269] [231910] (1 PDB entry)

   • Domains for 3cz5:

     1. Domain d3cz5a_: 3cz5 A: [231911] automated match to d4e7ob_ complexed with po4

     2. Domain d3cz5b_: 3cz5 B: [231912] automated match to d4e7ob_ complexed with po4

     3. Domain d3cz5c_: 3cz5 C: [231913] automated match to d4e7ob_ complexed with po4

     4. Domain d3cz5d_: 3cz5 D: [231914] automated match to d4e7ob_ complexed with po4

3. Bacteroides fragilis [TaxId:295405] [225318] (1 PDB entry)

   • Domain for 2qr3:

     • Domain d2qr3a_: 2qr3 A: [205876] automated match to d3t6ka_

4. Bermanella marisrubri [TaxId:207949] [225858] (1 PDB entry)

   • Domains for 3lte:

     1. Domain d3ltea_: 3lte A: [213019] automated match to d1nxoa_ complexed with gol, po4

     2. Domain d3lteb_: 3lte B: [213020] automated match to d1nxoa_ complexed with gol, po4

     3. Domain d3ltec_: 3lte C: [213021] automated match to d1nxoa_ complexed with gol, po4

     4. Domain d3lted_: 3lte D: [213022] automated match to d1nxoa_ complexed with gol, po4

     5. Domain d3ltee_: 3lte E: [213023] automated match to d1nxoa_ complexed with gol, po4

     6. Domain d3ltef_: 3lte F: [213024] automated match to d1nxoa_ complexed with gol, po4

     7. Domain d3lteg_: 3lte G: [213025] automated match to d1nxoa_ complexed with gol, po4

     8. Domain d3lteh_: 3lte H: [213026] automated match to d1nxoa_ complexed with gol, po4

     9. Domain d3ltei_: 3lte I: [213027] automated match to d1nxoa_ complexed with gol, po4

     10. Domain d3ltej_: 3lte J: [213028] automated match to d1nxoa_ complexed with gol, po4

     11. Domain d3ltek_: 3lte K: [213029] automated match to d1nxoa_ complexed with gol, po4

     12. Domain d3ltel_: 3lte L: [213030] automated match to d1nxoa_ complexed with gol, po4

     13. Domain d3ltem_: 3lte M: [213031] automated match to d1nxoa_ complexed with gol, po4

     14. Domain d3lten_: 3lte N: [213032] automated match to d1nxoa_ complexed with gol, po4

     15. Domain d3lteo_: 3lte O: [213033] automated match to d1nxoa_ complexed with gol, po4

     16. Domain d3ltep_: 3lte P: [213034] automated match to d1nxoa_ complexed with gol, po4

     17. Domain d3lteq_: 3lte Q: [213035] automated match to d1nxoa_ complexed with gol, po4

     18. Domain d3lter_: 3lte R: [213036] automated match to d1nxoa_ complexed with gol, po4

     19. Domain d3ltes_: 3lte S: [213037] automated match to d1nxoa_ complexed with gol, po4

     20. Domain d3ltet_: 3lte T: [213038] automated match to d1nxoa_ complexed with gol, po4

     21. Domain d3lteu_: 3lte U: [213039] automated match to d1nxoa_ complexed with gol, po4

     22. Domain d3ltev_: 3lte V: [213040] automated match to d1nxoa_ complexed with gol, po4

     23. Domain d3ltew_: 3lte W: [213041] automated match to d1nxoa_ complexed with gol, po4

     24. Domain d3ltex_: 3lte X: [213042] automated match to d1nxoa_ complexed with gol, po4

5. Burkholderia pseudomallei [TaxId:320372] [226124] (1 PDB entry)

   • Domain for 3rqi:

     • Domain d3rqia_: 3rqi A: [215990] automated match to d1s8na_ complexed with ca, cit, gol, so4

6. Carboxydothermus hydrogenoformans [TaxId:246194] [196575] (1 PDB entry)

   • Domain for 3h5i:

     • Domain d3h5ia_: 3h5i A: [196576] automated match to d3f6pa_ complexed with cl, na

7. Chloroflexus aurantiacus [TaxId:324602] [189714] (1 PDB entry)

   • Domains for 3t6k:

     1. Domain d3t6ka_: 3t6k A: [185664] automated match to d1mvoa_ complexed with edo, so4

     2. Domain d3t6kb_: 3t6k B: [185665] automated match to d1mvoa_ complexed with edo, so4

8. Clostridium difficile [TaxId:272563] [225325] (1 PDB entry)

   • Domains for 2qzj:

     1. Domain d2qzja_: 2qzj A: [205910] automated match to d2iynb_

     2. Domain d2qzjb_: 2qzj B: [205911] automated match to d2iynb_

     3. Domain d2qzjc_: 2qzj C: [205912] automated match to d2iynb_

     4. Domain d2qzjd_: 2qzj D: [205913] automated match to d2iynb_

     5. Domain d2qzje_: 2qzj E: [205914] automated match to d2iynb_

     6. Domain d2qzjf_: 2qzj F: [205915] automated match to d2iynb_

9. Clostridium phytofermentans [TaxId:357809] [225451] (1 PDB entry)

   • Domains for 3cu5:

     1. Domain d3cu5a_: 3cu5 A: [208953] automated match to d3crnb_

     2. Domain d3cu5b_: 3cu5 B: [208954] automated match to d3crnb_

10. Clostridium thermocellum [TaxId:203119] [224881] (2 PDB entries)

    1. Domain for 3jte:

       • Domain d3jtea_: 3jte A: [212080] automated match to d1l5za_

    2. Domain for 3lua:

       • Domain d3luaa_: 3lua A: [213069] automated match to d3h1ga_

11. Colwellia psychrerythraea [TaxId:167879] [188634] (1 PDB entry)

    • Domains for 3eqz:

      1. Domain d3eqza_: 3eqz A: [175164] automated match to d1nxoa_

      2. Domain d3eqzb_: 3eqz B: [175165] automated match to d1nxoa_

12. Deinococcus radiodurans [TaxId:1299] [226278] (1 PDB entry)

    • Domain for 3q9s:

      • Domain d3q9sa1: 3q9s A:3-122 [215133] Other proteins in same PDB: d3q9sa2 automated match to d1kgsa2

13. Desulfovibrio desulfuricans [TaxId:207559] [225424] (1 PDB entry)

    • Domains for 3cg0:

      1. Domain d3cg0a_: 3cg0 A: [208877] automated match to d3c3ma_

      2. Domain d3cg0b_: 3cg0 B: [208878] automated match to d3c3ma_

      3. Domain d3cg0c_: 3cg0 C: [208879] automated match to d3c3ma_

      4. Domain d3cg0d_: 3cg0 D: [208880] automated match to d3c3ma_

14. Desulfuromonas acetoxidans [TaxId:281689] [225364] (1 PDB entry)

    • Domains for 2zay:

      1. Domain d2zaya_: 2zay A: [207808] automated match to d3to5a_

      2. Domain d2zayb_: 2zay B: [207809] automated match to d3to5a_

15. Escherichia coli [TaxId:562] [186855] (6 PDB entries)

    1. Domain for 1xhe:

       • Domain d1xheb_: 1xhe B: [122002] Other proteins in same PDB: d1xhea1 automated match to d1mvoa_

    2. Domains for 1xhf:

       1. Domain d1xhfa_: 1xhf A: [122003] automated match to d1mvoa_ complexed with bef, bf2, bf4, mg

       2. Domain d1xhfb_: 1xhf B: [122004] automated match to d1mvoa_ complexed with bef, bf2, bf4, mg

    3. Domains for 1zgz:

       1. Domain d1zgzb_: 1zgz B: [125066] Other proteins in same PDB: d1zgza1 automated match to d1nxoa_ complexed with gol, so4

       2. Domain d1zgzc_: 1zgz C: [125067] Other proteins in same PDB: d1zgza1 automated match to d1nxoa_ complexed with gol, so4

       3. Domain d1zgzd_: 1zgz D: [125068] Other proteins in same PDB: d1zgza1 automated match to d1nxoa_ complexed with gol, so4

    4. Domain for 1zh2:

       • Domain d1zh2b_: 1zh2 B: [125070] Other proteins in same PDB: d1zh2a1 automated match to d1mvoa_ complexed with ca

    5. Domains for 1zh4:

       1. Domain d1zh4a_: 1zh4 A: [125071] automated match to d1mvoa_ complexed with bef, mg

       2. Domain d1zh4b_: 1zh4 B: [125072] automated match to d1mvoa_ complexed with bef, mg

    6. Domain for 4l85:

       • Domain d4l85c_: 4l85 C: [237054] automated match to d1zh4a_ complexed with iod; mutant

16. Escherichia coli [TaxId:83333] [225766] (2 PDB entries)

    1. Domain for 3eod:

       • Domain d3eoda_: 3eod A: [209571] automated match to d1peyc_

    2. Domains for 4l85:

       1. Domain d4l85a_: 4l85 A: [237052] automated match to d1zh4a_ complexed with iod; mutant

       2. Domain d4l85b_: 4l85 B: [237053] automated match to d1zh4a_ complexed with iod; mutant

17. Hahella chejuensis [TaxId:349521] [189109] (1 PDB entry)

    • Domain for 3kht:

      • Domain d3khta_: 3kht A: [179376] automated match to d1k68a_

18. Helicobacter pylori [TaxId:210] [187991] (1 PDB entry)

    • Domain for 2pln:

      • Domain d2plna_: 2pln A: [167209] automated match to d2pkxa1

19. Helicobacter pylori [TaxId:85962] [189260] (3 PDB entries)

    1. Domain for 3gwg:

       • Domain d3gwga_: 3gwg A: [177059] automated match to d2chea_ complexed with mg, so4

    2. Domain for 3h1e:

       • Domain d3h1ea_: 3h1e A: [177146] automated match to d2chea_ complexed with bef, mg, so4

    3. Domain for 3h1f:

       • Domain d3h1fa_: 3h1f A: [177147] automated match to d1e6ma_ complexed with mg, so4; mutant

20. Klebsiella pneumoniae [TaxId:484021] [233931] (1 PDB entry)

    • Domains for 3w9s:

      1. Domain d3w9sa_: 3w9s A: [233934] automated match to d2pl1a_ complexed with bef, mg

      2. Domain d3w9sb_: 3w9s B: [233933] automated match to d2pl1a_ complexed with bef, mg

21. Klebsiella pneumoniae [TaxId:573] [225322] (1 PDB entry)

    • Domains for 2qv0:

      1. Domain d2qv0a_: 2qv0 A: [205890] automated match to d3hdga_

      2. Domain d2qv0b_: 2qv0 B: [205891] automated match to d3hdga_

22. Legionella pneumophila [TaxId:272624] [225321] (1 PDB entry)

    • Domain for 2qvg:

      • Domain d2qvga_: 2qvg A: [205894] automated match to d3heba_

23. Methanoculleus marisnigri [TaxId:368407] [188339] (1 PDB entry)

    • Domain for 3c3m:

      • Domain d3c3ma_: 3c3m A: [173020] automated match to d1nxoa_ complexed with gol

24. Methanospirillum hungatei [TaxId:323259] [188365] (2 PDB entries)

    1. Domain for 3cg4:

       • Domain d3cg4a_: 3cg4 A: [173219] automated match to d1zesb1 complexed with gol, mg

    2. Domains for 3crn:

       1. Domain d3crna_: 3crn A: [199203] automated match to d3crnb_ complexed with gol, na

       2. Domain d3crnb_: 3crn B: [195284] automated match to d2zwma_ complexed with gol, na

25. Methylobacillus flagellatus [TaxId:265072] [189002] (1 PDB entry)

    • Domain for 3i42:

      • Domain d3i42a_: 3i42 A: [178077] automated match to d1vlzb_

26. Mycobacterium tuberculosis [TaxId:1773] [225553] (2 PDB entries)

    1. Domains for 3eul:

       1. Domain d3eula_: 3eul A: [209669] automated match to d3h1ga_ complexed with cl

       2. Domain d3eulb_: 3eul B: [209670] automated match to d3h1ga_ complexed with cl

       3. Domain d3eulc_: 3eul C: [209671] automated match to d3h1ga_ complexed with cl

       4. Domain d3euld_: 3eul D: [209672] automated match to d3h1ga_ complexed with cl

    2. Domains for 3nhz:

       1. Domain d3nhza_: 3nhz A: [213979] automated match to d2iyna_ complexed with mg

       2. Domain d3nhzb_: 3nhz B: [213980] automated match to d2iyna_ complexed with mg

       3. Domain d3nhzc_: 3nhz C: [213981] automated match to d2iyna_ complexed with mg

       4. Domain d3nhzd_: 3nhz D: [213982] automated match to d2iyna_ complexed with mg

27. Mycobacterium tuberculosis [TaxId:83332] [225355] (1 PDB entry)

    • Domain for 2oqr:

      • Domain d2oqra1: 2oqr A:1-128 [205351] Other proteins in same PDB: d2oqra2 automated match to d1p2fa2 complexed with act, bme, la

28. Myxococcus xanthus [TaxId:246197] [225930] (1 PDB entry)

    • Domains for 3nhm:

      1. Domain d3nhma_: 3nhm A: [213951] automated match to d3t6ka_

      2. Domain d3nhmb_: 3nhm B: [213952] automated match to d3t6ka_

29. Myxococcus xanthus [TaxId:34] [225234] (4 PDB entries)

    1. Domain for 2gkg:

       • Domain d2gkga_: 2gkg A: [204390] automated match to d2iynb_

    2. Domains for 2i6f:

       1. Domain d2i6fa_: 2i6f A: [204718] automated match to d2iynb_ complexed with cl

       2. Domain d2i6fb_: 2i6f B: [204719] automated match to d2iynb_ complexed with cl

       3. Domain d2i6fc_: 2i6f C: [204720] automated match to d2iynb_ complexed with cl

    3. Domain for 2nt3:

       • Domain d2nt3a_: 2nt3 A: [205156] automated match to d2iynb_ mutant

    4. Domain for 2nt4:

       • Domain d2nt4a_: 2nt4 A: [205157] automated match to d2iynb_ complexed with cl; mutant

30. Neptuniibacter caesariensis [TaxId:207954] [225361] (1 PDB entry)

    • Domain for 2rjn:

      • Domain d2rjna_: 2rjn A: [206138] automated match to d1qkka_

31. Pelobacter carbinolicus [TaxId:338963] [189418] (1 PDB entry)

    • Domains for 3n53:

      1. Domain d3n53a_: 3n53 A: [181905] automated match to d1b00a_

      2. Domain d3n53b_: 3n53 B: [181906] automated match to d1b00a_

32. Polaromonas sp. [TaxId:296591] [225647] (1 PDB entry)

    • Domains for 3grc:

      1. Domain d3grca_: 3grc A: [210640] automated match to d1chna_

      2. Domain d3grcb_: 3grc B: [210641] automated match to d1chna_

      3. Domain d3grcc_: 3grc C: [210642] automated match to d1chna_

      4. Domain d3grcd_: 3grc D: [210643] automated match to d1chna_

33. Pseudoalteromonas atlantica [TaxId:342610] [189165] (1 PDB entry)

    • Domains for 3kto:

      1. Domain d3ktoa_: 3kto A: [179695] automated match to d1d5wb_

      2. Domain d3ktob_: 3kto B: [179696] automated match to d1d5wb_

      3. Domain d3ktoc_: 3kto C: [179697] automated match to d1d5wb_

34. Pseudomonas fluorescens [TaxId:220664] [232518] (1 PDB entry)

    • Domain for 3hv2:

      • Domain d3hv2a_: 3hv2 A: [232519] automated match to d2rjna_ complexed with so4

35. Pseudomonas putida [TaxId:160488] [188909] (1 PDB entry)

    • Domains for 3hdv:

      1. Domain d3hdva_: 3hdv A: [177413] automated match to d1d5wa_

      2. Domain d3hdvb_: 3hdv B: [177414] automated match to d1d5wa_

      3. Domain d3hdvc_: 3hdv C: [177415] automated match to d1d5wa_

      4. Domain d3hdvd_: 3hdv D: [177416] automated match to d1d5wa_

36. Rhodobacter capsulatus [TaxId:1061] [225556] (3 PDB entries)

    1. Domain for 2jk1:

       • Domain d2jk1a_: 2jk1 A: [230917] automated match to d2vuib_ complexed with mg

    2. Domain for 2vuh:

       • Domain d2vuhb_: 2vuh B: [206478] automated match to d1xhea1 mutant

    3. Domain for 2vui:

       • Domain d2vuib_: 2vui B: [206479] automated match to d1zh2b_ complexed with bef, mg

37. Rhodobacter sphaeroides [TaxId:1063] [225833] (2 PDB entries)

    1. Domain for 3kyi:

       • Domain d3kyib_: 3kyi B: [212586] automated match to d3c3ma_

    2. Domain for 3kyj:

       • Domain d3kyjb_: 3kyj B: [212587] automated match to d3c3ma_ complexed with na

38. Rhodopirellula baltica [TaxId:265606] [225785] (1 PDB entry)

    • Domains for 3kcn:

      1. Domain d3kcna_: 3kcn A: [212292] automated match to d1l5ya_

      2. Domain d3kcnb_: 3kcn B: [212293] automated match to d1l5ya_

39. Rhodospirillum rubrum [TaxId:269796] [188910] (1 PDB entry)

    • Domains for 3heb:

      1. Domain d3heba_: 3heb A: [177426] automated match to d1k68a_ complexed with po4

      2. Domain d3hebb_: 3heb B: [177427] automated match to d1k68a_ complexed with po4

40. Silicibacter pomeroyi [TaxId:246200] [231231] (1 PDB entry)

    • Domains for 2qsj:

      1. Domain d2qsja_: 2qsj A: [231232] automated match to d3crna_

      2. Domain d2qsjb_: 2qsj B: [231233] automated match to d3crna_

41. Staphylococcus aureus [TaxId:1280] [225365] (1 PDB entry)

    • Domain for 3b2n:

      • Domain d3b2na_: 3b2n A: [208513] automated match to d3crnb_ complexed with na

42. Streptococcus pneumoniae [TaxId:171101] [226388] (2 PDB entries)

    1. Domains for 4e7o:

       1. Domain d4e7oa_: 4e7o A: [220354] automated match to d3ffwa_ complexed with mg

       2. Domain d4e7ob_: 4e7o B: [220355] automated match to d3ffwa_ complexed with mg

    2. Domains for 4e7p:

       1. Domain d4e7pa_: 4e7p A: [220356] automated match to d3ffwa_ complexed with bef, mg

       2. Domain d4e7pb_: 4e7p B: [220357] automated match to d3ffwa_ complexed with bef, mg

43. Syntrophus aciditrophicus [TaxId:56780] [225648] (1 PDB entry)

    • Domain for 3gt7:

      • Domain d3gt7a_: 3gt7 A: [210650] automated match to d1jlkb_

44. Thermotoga maritima [TaxId:2336] [188956] (8 PDB entries)

    1. Domains for 2qxy:

       1. Domain d2qxya_: 2qxy A: [205896] automated match to d1xhfb_ complexed with so4

       2. Domain d2qxyb_: 2qxy B: [205897] automated match to d1xhfb_ complexed with so4

    2. Domain for 3a0u:

       • Domain d3a0ua_: 3a0u A: [171638] automated match to d1nxoa_ complexed with bef, mg, pg4

    3. Domain for 3a10:

       • Domain d3a10a_: 3a10 A: [171639] automated match to d1nxoa_ complexed with bef, mg, pg4

    4. Domains for 3dge:

       1. Domain d3dgec_: 3dge C: [173924] Other proteins in same PDB: d3dgea1, d3dgeb1, d3dgeb2 automated match to d1mvoa_ complexed with adp, cit, so4

       2. Domain d3dged_: 3dge D: [173925] Other proteins in same PDB: d3dgea1, d3dgeb1, d3dgeb2 automated match to d1mvoa_ complexed with adp, cit, so4

    5. Domain for 3dgf:

       • Domain d3dgfc_: 3dgf C: [173926] automated match to d1mvoa_

    6. Domains for 3gl9:

       1. Domain d3gl9a_: 3gl9 A: [176730] automated match to d1mvoa_ complexed with mg, so4

       2. Domain d3gl9b_: 3gl9 B: [176731] automated match to d1mvoa_ complexed with mg, so4

       3. Domain d3gl9c_: 3gl9 C: [176732] automated match to d1mvoa_ complexed with mg, so4

       4. Domain d3gl9d_: 3gl9 D: [176733] automated match to d1mvoa_ complexed with mg, so4

    7. Domains for 3nnn:

       1. Domain d3nnna_: 3nnn A: [214012] automated match to d2iynb_ complexed with bef, mg

       2. Domain d3nnnb_: 3nnn B: [214013] automated match to d2iynb_ complexed with bef, mg

    8. Domains for 3nns:

       1. Domain d3nnsa_: 3nns A: [214014] automated match to d1mvoa_ complexed with bef, mg

       2. Domain d3nnsb_: 3nns B: [214015] automated match to d1mvoa_ complexed with bef, mg

45. Thermotoga maritima [TaxId:243274] [227724] (1 PDB entry)

    • Domain for 4ja2:

      • Domain d4ja2a_: 4ja2 A: [227725] automated match to d4h60a_ complexed with act, mg, so4; mutant

46. Vibrio cholerae [TaxId:345073] [226740] (2 PDB entries)

    1. Domain for 4h60:

       • Domain d4h60a_: 4h60 A: [222398] automated match to d3crnb_ complexed with ca, so4

    2. Domain for 4hnr:

       • Domain d4hnra_: 4hnr A: [228033] automated match to d4h60a_ complexed with so4

47. Vibrio parahaemolyticus [TaxId:223926] [188373] (1 PDB entry)

    • Domain for 3cfy:

      • Domain d3cfya_: 3cfy A: [173217] automated match to d1peyc_

48. Wolinella succinogenes [TaxId:844] [188908] (1 PDB entry)

    • Domains for 3hdg:

      1. Domain d3hdga_: 3hdg A: [177404] automated match to d1p6qa_ complexed with mg

      2. Domain d3hdgb_: 3hdg B: [177405] automated match to d1p6qa_ complexed with mg

      3. Domain d3hdgd_: 3hdg D: [177406] automated match to d1p6qa_ complexed with mg

      4. Domain d3hdge_: 3hdg E: [177407] automated match to d1p6qa_ complexed with mg

More info for Protein automated matches from c.23.1.0: automated matches

Timeline for Protein automated matches from c.23.1.0: automated matches:

• Protein automated matches from c.23.1.0: automated matches first appeared in SCOPe 2.01
  
• Protein automated matches from c.23.1.0: automated matches appears in SCOPe 2.02
  
• Protein automated matches from c.23.1.0: automated matches appears in SCOPe 2.04
  
• Protein automated matches from c.23.1.0: automated matches appears in the current release, SCOPe 2.08