Lineage for Protein: automated matches

  1. Root: SCOPe 2.01
  2. 968085Class c: Alpha and beta proteins (a/b) [51349] (147 folds)
  3. 968086Fold c.1: TIM beta/alpha-barrel [51350] (33 superfamilies)
    contains parallel beta-sheet barrel, closed; n=8, S=8; strand order 12345678
    the first seven superfamilies have similar phosphate-binding sites
  4. 968402Superfamily c.1.2: Ribulose-phoshate binding barrel [51366] (7 families) (S)
  5. 968474Family c.1.2.3: Decarboxylase [51375] (4 proteins)
  6. 968616Protein automated matches [190130] (9 species)
    not a true protein

Species:

  1. 968617Baker's yeast (Saccharomyces cerevisiae) [TaxId:4932] [188935] (5 PDB entries)
    1. Domains for 3gdk:
      1. 968630Domain d3gdka_: 3gdk A: [176536]
        automated match to d1dqwa_
      2. 968631Domain d3gdkb_: 3gdk B: [176537]
        automated match to d1dqwa_
      3. 968632Domain d3gdkc_: 3gdk C: [176538]
        automated match to d1dqwa_
      4. 968633Domain d3gdkd_: 3gdk D: [176539]
        automated match to d1dqwa_
    2. Domains for 3gdl:
      1. 968620Domain d3gdla_: 3gdl A: [176540]
        automated match to d1dqwa_
        complexed with up6
      2. 968621Domain d3gdlb_: 3gdl B: [176541]
        automated match to d1dqwa_
        complexed with up6
    3. Domains for 3gdm:
      1. 968618Domain d3gdma_: 3gdm A: [176542]
        automated match to d1dqwa_
        mutant
      2. 968619Domain d3gdmb_: 3gdm B: [176543]
        automated match to d1dqwa_
        mutant
    4. Domains for 3gdr:
      1. 968626Domain d3gdra_: 3gdr A: [176544]
        automated match to d1dqwa_
        mutant
      2. 968627Domain d3gdrb_: 3gdr B: [176545]
        automated match to d1dqwa_
        mutant
      3. 968628Domain d3gdrc_: 3gdr C: [176546]
        automated match to d1dqwa_
        mutant
      4. 968629Domain d3gdrd_: 3gdr D: [176547]
        automated match to d1dqwa_
        mutant
    5. Domains for 3gdt:
      1. 968622Domain d3gdta_: 3gdt A: [176548]
        automated match to d1dqwa_
        complexed with up6; mutant
      2. 968623Domain d3gdtb_: 3gdt B: [176549]
        automated match to d1dqwa_
        complexed with up6; mutant
      3. 968624Domain d3gdtc_: 3gdt C: [176550]
        automated match to d1dqwa_
        complexed with up6; mutant
      4. 968625Domain d3gdtd_: 3gdt D: [176551]
        automated match to d1dqwa_
        complexed with up6; mutant
  2. 968634Escherichia coli [TaxId:562] [186853] (1 PDB entry)
  3. 968636Geobacillus kaustophilus [TaxId:235909] [188260] (2 PDB entries)
    1. Domains for 2yyt:
      1. 968639Domain d2yyta_: 2yyt A: [170931]
        automated match to d1dbta_
      2. 968640Domain d2yytb_: 2yyt B: [170932]
        automated match to d1dbta_
      3. 968641Domain d2yytc_: 2yyt C: [170933]
        automated match to d1dbta_
      4. 968642Domain d2yytd_: 2yyt D: [170934]
        automated match to d1dbta_
    2. Domains for 2yyu:
      1. 968637Domain d2yyua_: 2yyu A: [170935]
        automated match to d1dbta_
        complexed with c5p
      2. 968638Domain d2yyub_: 2yyu B: [170936]
        automated match to d1dbta_
        complexed with c5p
  4. 968643Malaria parasite (Plasmodium falciparum) [TaxId:5833] [187245] (4 PDB entries)
    1. Domains for 2za1:
      1. 968650Domain d2za1a_: 2za1 A: [154264]
        automated match to d2f84a1
        complexed with omp
      2. 968651Domain d2za1b_: 2za1 B: [154265]
        automated match to d2f84a1
        complexed with omp
    2. Domains for 2za2:
      1. 968648Domain d2za2a_: 2za2 A: [154266]
        automated match to d2f84a1
      2. 968649Domain d2za2b_: 2za2 B: [154267]
        automated match to d2f84a1
    3. Domains for 2za3:
      1. 968646Domain d2za3a_: 2za3 A: [154268]
        automated match to d2f84a1
        complexed with u5p
      2. 968647Domain d2za3b_: 2za3 B: [154269]
        automated match to d2f84a1
        complexed with u5p
    4. Domains for 2zcg:
      1. 968644Domain d2zcga_: 2zcg A: [154341]
        automated match to d2f84a1
      2. 968645Domain d2zcgb_: 2zcg B: [154342]
        automated match to d2f84a1
  5. 968652Methanobacterium thermoautotrophicum [TaxId:187420] [189749] (5 PDB entries)
    1. Domain for 3pbu:
    2. Domain for 3pbv:
    3. Domains for 3pbw:
      1. 968656Domain d3pbwa_: 3pbw A: [183638]
        automated match to d1dv7a_
        complexed with up6; mutant
      2. 968657Domain d3pbwb_: 3pbw B: [183639]
        automated match to d1dv7a_
        complexed with up6; mutant
    4. Domains for 3pby:
      1. 968654Domain d3pbya_: 3pby A: [183640]
        automated match to d1dv7a_
        complexed with gol, up6; mutant
      2. 968655Domain d3pbyb_: 3pby B: [183641]
        automated match to d1dv7a_
        complexed with gol, up6; mutant
    5. Domains for 3pc0:
      1. 968658Domain d3pc0a_: 3pc0 A: [183643]
        automated match to d1dv7a_
        complexed with gol, up6; mutant
      2. 968659Domain d3pc0b_: 3pc0 B: [183644]
        automated match to d1dv7a_
        complexed with gol, up6; mutant
  6. 968661Methanothermobacter thermautotrophicus [TaxId:145262] [189782] (9 PDB entries)
    1. Domains for 3nq6:
      1. 968676Domain d3nq6a_: 3nq6 A: [182468]
        automated match to d1dv7a_
        complexed with gol, up6; mutant
      2. 968677Domain d3nq6b_: 3nq6 B: [182469]
        automated match to d1dv7a_
        complexed with gol, up6; mutant
    2. Domains for 3nq7:
      1. 968674Domain d3nq7a_: 3nq7 A: [182470]
        automated match to d1dv7a_
        complexed with bmp, gol; mutant
      2. 968675Domain d3nq7b_: 3nq7 B: [182471]
        automated match to d1dv7a_
        complexed with bmp, gol; mutant
    3. Domains for 3nqa:
      1. 968666Domain d3nqaa_: 3nqa A: [182473]
        automated match to d1dv7a_
        complexed with bmp; mutant
      2. 968667Domain d3nqab_: 3nqa B: [182474]
        automated match to d1dv7a_
        complexed with bmp; mutant
    4. Domains for 3nqc:
      1. 968678Domain d3nqca_: 3nqc A: [182475]
        automated match to d1dv7a_
        complexed with bmp; mutant
      2. 968679Domain d3nqcb_: 3nqc B: [182476]
        automated match to d1dv7a_
        complexed with bmp; mutant
    5. Domains for 3nqd:
      1. 968668Domain d3nqda_: 3nqd A: [182477]
        automated match to d1dv7a_
        complexed with bmp, gol; mutant
      2. 968669Domain d3nqdb_: 3nqd B: [182478]
        automated match to d1dv7a_
        complexed with bmp, gol; mutant
    6. Domains for 3nqe:
      1. 968672Domain d3nqea_: 3nqe A: [182479]
        automated match to d1dv7a_
        complexed with bmp, gol; mutant
      2. 968673Domain d3nqeb_: 3nqe B: [182480]
        automated match to d1dv7a_
        complexed with bmp, gol; mutant
    7. Domains for 3nqf:
      1. 968662Domain d3nqfa_: 3nqf A: [182481]
        automated match to d1dv7a_
        complexed with bmp, gol; mutant
      2. 968663Domain d3nqfb_: 3nqf B: [182482]
        automated match to d1dv7a_
        complexed with bmp, gol; mutant
    8. Domains for 3nqg:
      1. 968670Domain d3nqga_: 3nqg A: [182483]
        automated match to d1dv7a_
        complexed with bmp, gol; mutant
      2. 968671Domain d3nqgb_: 3nqg B: [182484]
        automated match to d1dv7a_
        complexed with bmp, gol; mutant
    9. Domains for 3nqm:
      1. 968664Domain d3nqma_: 3nqm A: [182486]
        automated match to d1dv7a_
        complexed with bmp, gol; mutant
      2. 968665Domain d3nqmb_: 3nqm B: [182487]
        automated match to d1dv7a_
        complexed with bmp, gol; mutant
  7. 968680Methanothermobacter thermautotrophicus [TaxId:187420] [188934] (38 PDB entries)
    1. Domains for 3g18:
      1. 968752Domain d3g18a_: 3g18 A: [176243]
        automated match to d1dv7a_
      2. 968753Domain d3g18b_: 3g18 B: [176244]
        automated match to d1dv7a_
    2. Domains for 3g1a:
      1. 968736Domain d3g1aa_: 3g1a A: [176246]
        automated match to d1dv7a_
        complexed with up6
      2. 968737Domain d3g1ab_: 3g1a B: [176247]
        automated match to d1dv7a_
        complexed with up6
    3. Domains for 3g1d:
      1. 968748Domain d3g1da_: 3g1d A: [176250]
        automated match to d1dv7a_
        complexed with u
      2. 968749Domain d3g1db_: 3g1d B: [176251]
        automated match to d1dv7a_
        complexed with u
    4. Domains for 3g1f:
      1. 968767Domain d3g1fa_: 3g1f A: [176252]
        automated match to d1dv7a_
        complexed with 2om
      2. 968768Domain d3g1fb_: 3g1f B: [176253]
        automated match to d1dv7a_
        complexed with 2om
      3. 968769Domain d3g1fc_: 3g1f C: [176254]
        automated match to d1dv7a_
        complexed with 2om
      4. 968770Domain d3g1fd_: 3g1f D: [176255]
        automated match to d1dv7a_
        complexed with 2om
      5. 968771Domain d3g1fe_: 3g1f E: [176256]
        automated match to d1dv7a_
        complexed with 2om
      6. 968772Domain d3g1ff_: 3g1f F: [176257]
        automated match to d1dv7a_
        complexed with 2om
      7. 968773Domain d3g1fg_: 3g1f G: [176258]
        automated match to d1dv7a_
        complexed with 2om
      8. 968774Domain d3g1fh_: 3g1f H: [176259]
        automated match to d1dv7a_
        complexed with 2om
      9. 968775Domain d3g1fi_: 3g1f I: [176260]
        automated match to d1dv7a_
        complexed with 2om
      10. 968776Domain d3g1fj_: 3g1f J: [176261]
        automated match to d1dv7a_
        complexed with 2om
      11. 968777Domain d3g1fk_: 3g1f K: [176262]
        automated match to d1dv7a_
        complexed with 2om
      12. 968778Domain d3g1fl_: 3g1f L: [176263]
        automated match to d1dv7a_
        complexed with 2om
      13. 968779Domain d3g1fm_: 3g1f M: [176264]
        automated match to d1dv7a_
        complexed with 2om
    5. Domains for 3g1h:
      1. 968754Domain d3g1ha_: 3g1h A: [176265]
        automated match to d1dv7a_
        complexed with h2u
      2. 968755Domain d3g1hb_: 3g1h B: [176266]
        automated match to d1dv7a_
        complexed with h2u
      3. 968756Domain d3g1hc_: 3g1h C: [176267]
        automated match to d1dv7a_
        complexed with h2u
      4. 968757Domain d3g1hd_: 3g1h D: [176268]
        automated match to d1dv7a_
        complexed with h2u
      5. 968758Domain d3g1he_: 3g1h E: [176269]
        automated match to d1dv7a_
        complexed with h2u
      6. 968759Domain d3g1hf_: 3g1h F: [176270]
        automated match to d1dv7a_
        complexed with h2u
      7. 968760Domain d3g1hg_: 3g1h G: [176271]
        automated match to d1dv7a_
        complexed with h2u
      8. 968761Domain d3g1hh_: 3g1h H: [176272]
        automated match to d1dv7a_
        complexed with h2u
      9. 968762Domain d3g1hi_: 3g1h I: [176273]
        automated match to d1dv7a_
        complexed with h2u
      10. 968763Domain d3g1hj_: 3g1h J: [176274]
        automated match to d1dv7a_
        complexed with h2u
      11. 968764Domain d3g1hk_: 3g1h K: [176275]
        automated match to d1dv7a_
        complexed with h2u
      12. 968765Domain d3g1hl_: 3g1h L: [176276]
        automated match to d1dv7a_
        complexed with h2u
      13. 968766Domain d3g1hm_: 3g1h M: [176277]
        automated match to d1dv7a_
        complexed with h2u
    6. Domains for 3g1s:
      1. 968722Domain d3g1sa_: 3g1s A: [176278]
        automated match to d1dv7a_
        mutant
      2. 968723Domain d3g1sb_: 3g1s B: [176279]
        automated match to d1dv7a_
        mutant
    7. Domains for 3g1v:
      1. 968687Domain d3g1va_: 3g1v A: [176280]
        automated match to d1dv7a_
        complexed with 5fu, cl; mutant
      2. 968688Domain d3g1vb_: 3g1v B: [176281]
        automated match to d1dv7a_
        complexed with 5fu, cl; mutant
    8. Domains for 3g1x:
      1. 968740Domain d3g1xa_: 3g1x A: [176282]
        automated match to d1dv7a_
        complexed with cl, u; mutant
      2. 968741Domain d3g1xb_: 3g1x B: [176283]
        automated match to d1dv7a_
        complexed with cl, u; mutant
    9. Domains for 3g1y:
      1. 968732Domain d3g1ya_: 3g1y A: [176284]
        automated match to d1dv7a_
        complexed with so4; mutant
      2. 968733Domain d3g1yb_: 3g1y B: [176285]
        automated match to d1dv7a_
        complexed with so4; mutant
    10. Domains for 3g22:
      1. 968734Domain d3g22a_: 3g22 A: [176288]
        automated match to d1dv7a_
        complexed with u; mutant
      2. 968735Domain d3g22b_: 3g22 B: [176289]
        automated match to d1dv7a_
        complexed with u; mutant
    11. Domains for 3g24:
      1. 968730Domain d3g24a_: 3g24 A: [176290]
        automated match to d1dv7a_
        complexed with up6; mutant
      2. 968731Domain d3g24b_: 3g24 B: [176291]
        automated match to d1dv7a_
        complexed with up6; mutant
    12. Domains for 3lht:
      1. 968708Domain d3lhta_: 3lht A: [180290]
        automated match to d1dv7a_
        complexed with bmq; mutant
      2. 968709Domain d3lhtb_: 3lht B: [180291]
        automated match to d1dv7a_
        complexed with bmq; mutant
    13. Domains for 3lhu:
      1. 968750Domain d3lhua_: 3lhu A: [180292]
        automated match to d1dv7a_
        complexed with bmq; mutant
      2. 968751Domain d3lhub_: 3lhu B: [180293]
        automated match to d1dv7a_
        complexed with bmq; mutant
    14. Domains for 3lhv:
      1. 968712Domain d3lhva_: 3lhv A: [180294]
        automated match to d1dv7a_
        complexed with bmq; mutant
      2. 968713Domain d3lhvb_: 3lhv B: [180295]
        automated match to d1dv7a_
        complexed with bmq; mutant
      3. 968714Domain d3lhvc_: 3lhv C: [180296]
        automated match to d1dv7a_
        complexed with bmq; mutant
      4. 968715Domain d3lhvd_: 3lhv D: [180297]
        automated match to d1dv7a_
        complexed with bmq; mutant
    15. Domains for 3lhw:
      1. 968693Domain d3lhwa_: 3lhw A: [180298]
        automated match to d1dv7a_
        complexed with bmq; mutant
      2. 968694Domain d3lhwb_: 3lhw B: [180299]
        automated match to d1dv7a_
        complexed with bmq; mutant
    16. Domains for 3lhy:
      1. 968724Domain d3lhya_: 3lhy A: [180300]
        automated match to d1dv7a_
        complexed with bmq; mutant
      2. 968725Domain d3lhyb_: 3lhy B: [180301]
        automated match to d1dv7a_
        complexed with bmq; mutant
    17. Domains for 3lhz:
      1. 968710Domain d3lhza_: 3lhz A: [180302]
        automated match to d1dv7a_
        complexed with bmq; mutant
      2. 968711Domain d3lhzb_: 3lhz B: [180303]
        automated match to d1dv7a_
        complexed with bmq; mutant
    18. Domains for 3li0:
      1. 968746Domain d3li0a_: 3li0 A: [180304]
        automated match to d1dv7a_
        complexed with bmq; mutant
      2. 968747Domain d3li0b_: 3li0 B: [180305]
        automated match to d1dv7a_
        complexed with bmq; mutant
    19. Domains for 3li1:
      1. 968695Domain d3li1a_: 3li1 A: [180306]
        automated match to d1dv7a_
        complexed with bmq; mutant
      2. 968696Domain d3li1b_: 3li1 B: [180307]
        automated match to d1dv7a_
        complexed with bmq; mutant
    20. Domains for 3lld:
      1. 968716Domain d3llda_: 3lld A: [180368]
        automated match to d1dv7a_
        complexed with up6; mutant
      2. 968717Domain d3lldb_: 3lld B: [180369]
        automated match to d1dv7a_
        complexed with up6; mutant
    21. Domains for 3llf:
      1. 968700Domain d3llfa_: 3llf A: [180372]
        automated match to d1dv7a_
        complexed with up6; mutant
      2. 968701Domain d3llfb_: 3llf B: [180373]
        automated match to d1dv7a_
        complexed with up6; mutant
    22. Domains for 3ltp:
      1. 968704Domain d3ltpa_: 3ltp A: [180559]
        automated match to d1dv7a_
        complexed with bmp
      2. 968705Domain d3ltpb_: 3ltp B: [180560]
        automated match to d1dv7a_
        complexed with bmp
    23. Domains for 3lts:
      1. 968744Domain d3ltsa_: 3lts A: [180562]
        automated match to d1dv7a_
        complexed with bmp; mutant
      2. 968745Domain d3ltsb_: 3lts B: [180563]
        automated match to d1dv7a_
        complexed with bmp; mutant
    24. Domains for 3lty:
      1. 968738Domain d3ltya_: 3lty A: [180571]
        automated match to d1dv7a_
        complexed with bmp; mutant
      2. 968739Domain d3ltyb_: 3lty B: [180572]
        automated match to d1dv7a_
        complexed with bmp; mutant
    25. Domains for 3lv5:
      1. 968702Domain d3lv5a_: 3lv5 A: [180581]
        automated match to d1dv7a_
        complexed with bmp; mutant
      2. 968703Domain d3lv5b_: 3lv5 B: [180582]
        automated match to d1dv7a_
        complexed with bmp; mutant
    26. Domains for 3lv6:
      1. 968706Domain d3lv6a_: 3lv6 A: [180583]
        automated match to d1dv7a_
        complexed with bmp; mutant
      2. 968707Domain d3lv6b_: 3lv6 B: [180584]
        automated match to d1dv7a_
        complexed with bmp; mutant
    27. Domain for 3m1z:
    28. Domains for 3m41:
      1. 968718Domain d3m41a_: 3m41 A: [180812]
        automated match to d1dv7a_
        complexed with gol; mutant
      2. 968719Domain d3m41b_: 3m41 B: [180813]
        automated match to d1dv7a_
        complexed with gol; mutant
    29. Domains for 3m43:
      1. 968691Domain d3m43a_: 3m43 A: [180814]
        automated match to d1dv7a_
        complexed with gol; mutant
      2. 968692Domain d3m43b_: 3m43 B: [180815]
        automated match to d1dv7a_
        complexed with gol; mutant
    30. Domains for 3m44:
      1. 968720Domain d3m44a_: 3m44 A: [180816]
        automated match to d1dv7a_
        complexed with gol; mutant
      2. 968721Domain d3m44b_: 3m44 B: [180817]
        automated match to d1dv7a_
        complexed with gol; mutant
    31. Domains for 3m47:
      1. 968683Domain d3m47a_: 3m47 A: [180818]
        automated match to d1dv7a_
        complexed with gol; mutant
      2. 968684Domain d3m47b_: 3m47 B: [180819]
        automated match to d1dv7a_
        complexed with gol; mutant
    32. Domains for 3m5x:
      1. 968726Domain d3m5xa_: 3m5x A: [180886]
        automated match to d1dv7a_
        mutant
      2. 968727Domain d3m5xb_: 3m5x B: [180887]
        automated match to d1dv7a_
        mutant
    33. Domains for 3m5y:
      1. 968742Domain d3m5ya_: 3m5y A: [180888]
        automated match to d1dv7a_
        complexed with fmt, gol; mutant
      2. 968743Domain d3m5yb_: 3m5y B: [180889]
        automated match to d1dv7a_
        complexed with fmt, gol; mutant
    34. Domains for 3m5z:
      1. 968698Domain d3m5za_: 3m5z A: [180890]
        automated match to d1dv7a_
        complexed with so4; mutant
      2. 968699Domain d3m5zb_: 3m5z B: [180891]
        automated match to d1dv7a_
        complexed with so4; mutant
    35. Domains for 3qez:
      1. 968728Domain d3qeza_: 3qez A: [184363]
        automated match to d1dv7a_
        complexed with bmp, gol; mutant
      2. 968729Domain d3qezb_: 3qez B: [184364]
        automated match to d1dv7a_
        complexed with bmp, gol; mutant
    36. Domains for 3qf0:
      1. 968689Domain d3qf0a_: 3qf0 A: [184365]
        automated match to d1dv7a_
        complexed with bmp, gol; mutant
      2. 968690Domain d3qf0b_: 3qf0 B: [184366]
        automated match to d1dv7a_
        complexed with bmp, gol; mutant
    37. Domains for 3siz:
      1. 968685Domain d3siza_: 3siz A: [185420]
        automated match to d1dv7a_
        complexed with bmp, gol; mutant
      2. 968686Domain d3sizb_: 3siz B: [185421]
        automated match to d1dv7a_
        complexed with bmp, gol; mutant
    38. Domains for 3sj3:
      1. 968681Domain d3sj3a_: 3sj3 A: [185422]
        automated match to d1dv7a_
        complexed with bmp; mutant
      2. 968682Domain d3sj3b_: 3sj3 B: [185423]
        automated match to d1dv7a_
        complexed with bmp; mutant
  8. 968780Plasmodium berghei [TaxId:5821] [187698] (1 PDB entry)
  9. 968782Plasmodium falciparum [TaxId:36329] [187244] (4 PDB entries)
    1. Domains for 3mwa:
      1. 968787Domain d3mwaa_: 3mwa A: [181646]
        automated match to d2f84a1
        complexed with peg, po4, uft
      2. 968788Domain d3mwab_: 3mwa B: [181647]
        automated match to d2f84a1
        complexed with peg, po4, uft
    2. Domains for 3n2m:
      1. 968789Domain d3n2ma_: 3n2m A: [181837]
        automated match to d2f84a1
        complexed with edo, fnu, peg, so4, trs
      2. 968790Domain d3n2mb_: 3n2m B: [181838]
        automated match to d2f84a1
        complexed with edo, fnu, peg, so4, trs
    3. Domains for 3n34:
      1. 968785Domain d3n34a_: 3n34 A: [181867]
        automated match to d2f84a1
        complexed with edo, fnu, peg, pge, po4
      2. 968786Domain d3n34b_: 3n34 B: [181868]
        automated match to d2f84a1
        complexed with edo, fnu, peg, pge, po4
    4. Domains for 3n3m:
      1. 968783Domain d3n3ma_: 3n3m A: [181877]
        automated match to d2f84a1
        complexed with edo, gol, nup, pge, po4
      2. 968784Domain d3n3mb_: 3n3m B: [181878]
        automated match to d2f84a1
        complexed with edo, gol, nup, pge, po4

More info for Protein automated matches from c.1.2.3: Decarboxylase

Timeline for Protein automated matches from c.1.2.3: Decarboxylase: