Lineage for Protein: automated matches

  1. Root: SCOPe 2.05
  2. 1886641Class d: Alpha and beta proteins (a+b) [53931] (381 folds)
  3. 1898312Fold d.20: UBC-like [54494] (1 superfamily)
    alpha-beta(4)-alpha(3); core: meander beta-sheet plus one helix 2
  4. 1898313Superfamily d.20.1: UBC-like [54495] (5 families) (S)
  5. 1898314Family d.20.1.1: UBC-related [54496] (7 proteins)
  6. 1898507Protein automated matches [190124] (12 species)
    not a true protein

Species:

  1. 1898508Baker's yeast (Saccharomyces cerevisiae) [TaxId:4932] [189599] (1 PDB entry)
  2. 1898511Baker's yeast (Saccharomyces cerevisiae) [TaxId:559292] [197196] (3 PDB entries)
    1. Domain for 4jqu:
    2. Domain for 4r62:
    3. Domain for 5aie:
  3. 1898515Entamoeba (Entamoeba histolytica) [TaxId:5759] [193761] (1 PDB entry)
  4. 1898517Fission yeast (Schizosaccharomyces pombe) [TaxId:4896] [189937] (1 PDB entry)
  5. 1898519Human (Homo sapiens) [TaxId:9606] [186848] (39 PDB entries)
    1. Domains for 1x23:
      1. 1898527Domain d1x23b_: 1x23 B: [121616]
        Other proteins in same PDB: d1x23a1
        automated match to d1ur6a_
      2. 1898528Domain d1x23c_: 1x23 C: [121617]
        Other proteins in same PDB: d1x23a1
        automated match to d1ur6a_
      3. 1898529Domain d1x23d_: 1x23 D: [121618]
        Other proteins in same PDB: d1x23a1
        automated match to d1ur6a_
    2. Domains for 2c2v:
      1. 1898591Domain d2c2vb_: 2c2v B: [129686]
        Other proteins in same PDB: d2c2vc1, d2c2vs1, d2c2vt_, d2c2vu_, d2c2vv_
        automated match to d1j7db_
      2. 1898592Domain d2c2ve_: 2c2v E: [129688]
        Other proteins in same PDB: d2c2vc1, d2c2vs1, d2c2vt_, d2c2vu_, d2c2vv_
        automated match to d1j7db_
      3. 1898593Domain d2c2vf_: 2c2v F: [129689]
        Other proteins in same PDB: d2c2vc1, d2c2vs1, d2c2vt_, d2c2vu_, d2c2vv_
        automated match to d1j7da_
      4. 1898594Domain d2c2vh_: 2c2v H: [129690]
        Other proteins in same PDB: d2c2vc1, d2c2vs1, d2c2vt_, d2c2vu_, d2c2vv_
        automated match to d1j7db_
      5. 1898595Domain d2c2vi_: 2c2v I: [129691]
        Other proteins in same PDB: d2c2vc1, d2c2vs1, d2c2vt_, d2c2vu_, d2c2vv_
        automated match to d1j7da_
      6. 1898596Domain d2c2vk_: 2c2v K: [129692]
        Other proteins in same PDB: d2c2vc1, d2c2vs1, d2c2vt_, d2c2vu_, d2c2vv_
        automated match to d1j7db_
      7. 1898597Domain d2c2vl_: 2c2v L: [129693]
        Other proteins in same PDB: d2c2vc1, d2c2vs1, d2c2vt_, d2c2vu_, d2c2vv_
        automated match to d1j7da_
    3. Domains for 2c4p:
      1. 1898563Domain d2c4pa_: 2c4p A: [163259]
        automated match to d1z2ua1
      2. 1898564Domain d2c4pb_: 2c4p B: [163260]
        automated match to d1z2ua1
    4. Domains for 2clw:
      1. 1898548Domain d2clwa_: 2clw A: [130596]
        automated match to d1ur6a_
        complexed with gol, so4
      2. 1898549Domain d2clwb_: 2clw B: [130597]
        automated match to d1ur6a_
        complexed with gol, so4
      3. 1898550Domain d2clwc_: 2clw C: [130598]
        automated match to d1ur6a_
        complexed with gol, so4
      4. 1898551Domain d2clwd_: 2clw D: [130599]
        automated match to d1ur6a_
        complexed with gol, so4
    5. Domains for 2cyx:
      1. 1898569Domain d2cyxa_: 2cyx A: [163514]
        automated match to d2ucza_
      2. 1898570Domain d2cyxb_: 2cyx B: [163515]
        automated match to d2ucza_
      3. 1898571Domain d2cyxc_: 2cyx C: [163516]
        automated match to d2ucza_
    6. Domain for 2fuh:
    7. Domain for 2kly:
    8. Domain for 2lxp:
    9. Domains for 2qgx:
      1. 1898543Domain d2qgxa_: 2qgx A: [167587]
        automated match to d1zuoa1
      2. 1898544Domain d2qgxb_: 2qgx B: [167588]
        automated match to d1zuoa1
      3. 1898545Domain d2qgxc_: 2qgx C: [167589]
        automated match to d1zuoa1
      4. 1898546Domain d2qgxd_: 2qgx D: [167590]
        automated match to d1zuoa1
    10. Domains for 2yho:
      1. 1898531Domain d2yhob_: 2yho B: [170787]
        automated match to d1z2ua1
        complexed with act, zn
      2. 1898532Domain d2yhod_: 2yho D: [170788]
        automated match to d1z2ua1
        complexed with act, zn
      3. 1898533Domain d2yhof_: 2yho F: [170789]
        automated match to d1z2ua1
        complexed with act, zn
      4. 1898534Domain d2yhoh_: 2yho H: [170790]
        automated match to d1z2ua1
        complexed with act, zn
    11. Domain for 3a33:
    12. Domain for 3h8k:
    13. Domain for 3hct:
    14. Domains for 3hcu:
      1. 1898573Domain d3hcub_: 3hcu B: [177395]
        automated match to d1j7db_
        protein/DNA complex; complexed with zn
      2. 1898574Domain d3hcud_: 3hcu D: [177396]
        automated match to d1j7db_
        protein/DNA complex; complexed with zn
    15. Domain for 3l1z:
    16. Domains for 3ptf:
      1. 1898559Domain d3ptfa_: 3ptf A: [183968]
        Other proteins in same PDB: d3ptfc_, d3ptfd_
        automated match to d1z2ua1
      2. 1898560Domain d3ptfb_: 3ptf B: [183969]
        Other proteins in same PDB: d3ptfc_, d3ptfd_
        automated match to d1z2ua1
    17. Domain for 3rpg:
    18. Domain for 3tgd:
    19. Domains for 3von:
      1. 1898575Domain d3vonc_: 3von C: [250627]
        Other proteins in same PDB: d3vona_, d3vonb_, d3vond_, d3vonf_, d3vonh_, d3voni_, d3vonk_, d3vonm_, d3vono_, d3vonp_, d3vonr_, d3vont_, d3vonv_, d3vonw_, d3vony_
        automated match to d2c2vb_
      2. 1898576Domain d3vone_: 3von E: [250629]
        Other proteins in same PDB: d3vona_, d3vonb_, d3vond_, d3vonf_, d3vonh_, d3voni_, d3vonk_, d3vonm_, d3vono_, d3vonp_, d3vonr_, d3vont_, d3vonv_, d3vonw_, d3vony_
        automated match to d2c2vb_
      3. 1898577Domain d3vong_: 3von G: [250631]
        Other proteins in same PDB: d3vona_, d3vonb_, d3vond_, d3vonf_, d3vonh_, d3voni_, d3vonk_, d3vonm_, d3vono_, d3vonp_, d3vonr_, d3vont_, d3vonv_, d3vonw_, d3vony_
        automated match to d2c2vb_
      4. 1898578Domain d3vonj_: 3von J: [250634]
        Other proteins in same PDB: d3vona_, d3vonb_, d3vond_, d3vonf_, d3vonh_, d3voni_, d3vonk_, d3vonm_, d3vono_, d3vonp_, d3vonr_, d3vont_, d3vonv_, d3vonw_, d3vony_
        automated match to d2c2vb_
      5. 1898579Domain d3vonl_: 3von L: [250636]
        Other proteins in same PDB: d3vona_, d3vonb_, d3vond_, d3vonf_, d3vonh_, d3voni_, d3vonk_, d3vonm_, d3vono_, d3vonp_, d3vonr_, d3vont_, d3vonv_, d3vonw_, d3vony_
        automated match to d2c2vb_
      6. 1898580Domain d3vonn_: 3von N: [250638]
        Other proteins in same PDB: d3vona_, d3vonb_, d3vond_, d3vonf_, d3vonh_, d3voni_, d3vonk_, d3vonm_, d3vono_, d3vonp_, d3vonr_, d3vont_, d3vonv_, d3vonw_, d3vony_
        automated match to d2c2vb_
      7. 1898581Domain d3vonq_: 3von Q: [250641]
        Other proteins in same PDB: d3vona_, d3vonb_, d3vond_, d3vonf_, d3vonh_, d3voni_, d3vonk_, d3vonm_, d3vono_, d3vonp_, d3vonr_, d3vont_, d3vonv_, d3vonw_, d3vony_
        automated match to d2c2vb_
      8. 1898582Domain d3vons_: 3von S: [250643]
        Other proteins in same PDB: d3vona_, d3vonb_, d3vond_, d3vonf_, d3vonh_, d3voni_, d3vonk_, d3vonm_, d3vono_, d3vonp_, d3vonr_, d3vont_, d3vonv_, d3vonw_, d3vony_
        automated match to d2c2vb_
      9. 1898583Domain d3vonu_: 3von U: [250645]
        Other proteins in same PDB: d3vona_, d3vonb_, d3vond_, d3vonf_, d3vonh_, d3voni_, d3vonk_, d3vonm_, d3vono_, d3vonp_, d3vonr_, d3vont_, d3vonv_, d3vonw_, d3vony_
        automated match to d2c2vb_
      10. 1898584Domain d3vonx_: 3von X: [250648]
        Other proteins in same PDB: d3vona_, d3vonb_, d3vond_, d3vonf_, d3vonh_, d3voni_, d3vonk_, d3vonm_, d3vono_, d3vonp_, d3vonr_, d3vont_, d3vonv_, d3vonw_, d3vony_
        automated match to d2c2vb_
      11. 1898585Domain d3vonz_: 3von Z: [250650]
        Other proteins in same PDB: d3vona_, d3vonb_, d3vond_, d3vonf_, d3vonh_, d3voni_, d3vonk_, d3vonm_, d3vono_, d3vonp_, d3vonr_, d3vont_, d3vonv_, d3vonw_, d3vony_
        automated match to d2c2vb_
    20. Domains for 4ap4:
      1. 1898539Domain d4ap4b_: 4ap4 B: [194914]
        Other proteins in same PDB: d4ap4c_, d4ap4f_
        automated match to d2c4pb_
        complexed with zn
      2. 1898540Domain d4ap4e_: 4ap4 E: [201467]
        Other proteins in same PDB: d4ap4c_, d4ap4f_
        automated match to d4ap4b_
        complexed with zn
    21. Domains for 4auq:
      1. 1898541Domain d4auqa_: 4auq A: [194819]
        Other proteins in same PDB: d4auqc_, d4auqf_
        automated match to d3a33a_
        complexed with zn
      2. 1898542Domain d4auqd_: 4auq D: [194817]
        Other proteins in same PDB: d4auqc_, d4auqf_
        automated match to d3a33a_
        complexed with zn
    22. Domains for 4ccg:
      1. 1898565Domain d4ccga_: 4ccg A: [251362]
        automated match to d1yh2a1
        complexed with cl, epe, gol, na, nh4, so4, zn
      2. 1898566Domain d4ccgb_: 4ccg B: [251363]
        automated match to d1yh2a1
        complexed with cl, epe, gol, na, nh4, so4, zn
    23. Domain for 4lad:
    24. Domain for 4ldt:
    25. Domain for 4nr3:
    26. Domain for 4nrg:
    27. Domain for 4nri:
    28. Domain for 4onl:
    29. Domain for 4onm:
    30. Domain for 4onn:
    31. Domains for 4qpl:
      1. 1898536Domain d4qplb_: 4qpl B: [260380]
        automated match to d2yhob_
        complexed with v3l, zn
      2. 1898537Domain d4qpld_: 4qpl D: [260760]
        automated match to d2yhob_
        complexed with v3l, zn
    32. Domains for 4s3o:
      1. 1898555Domain d4s3oa_: 4s3o A: [274919]
        automated match to d3rpga_
        complexed with zn
      2. 1898556Domain d4s3od_: 4s3o D: [274920]
        automated match to d3rpga_
        complexed with zn
    33. Domain for 4tkp:
    34. Domains for 4v3k:
      1. 1898557Domain d4v3ka_: 4v3k A: [271275]
        Other proteins in same PDB: d4v3kb_, d4v3ke_
        automated match to d3a33a_
        complexed with cl, edo, zn
      2. 1898558Domain d4v3kd_: 4v3k D: [271277]
        Other proteins in same PDB: d4v3kb_, d4v3ke_
        automated match to d3a33a_
        complexed with cl, edo, zn
    35. Domain for 4v3l:
    36. Domain for 4wz3:
    37. Domains for 5aiu:
      1. 1898567Domain d5aiub_: 5aiu B: [274672]
        Other proteins in same PDB: d5aiuc_, d5aiuf_
        automated match to d3w31b_
        complexed with edo, zn
      2. 1898568Domain d5aiue_: 5aiu E: [274675]
        Other proteins in same PDB: d5aiuc_, d5aiuf_
        automated match to d3w31b_
        complexed with edo, zn
    38. Domains for 5d0k:
      1. 1898587Domain d5d0ka_: 5d0k A: [279796]
        Other proteins in same PDB: d5d0kb_, d5d0ke_, d5d0kh_, d5d0kk_
        automated match to d3tgda_
        complexed with zn
      2. 1898588Domain d5d0kd_: 5d0k D: [279801]
        Other proteins in same PDB: d5d0kb_, d5d0ke_, d5d0kh_, d5d0kk_
        automated match to d3tgda_
        complexed with zn
      3. 1898589Domain d5d0kg_: 5d0k G: [279798]
        Other proteins in same PDB: d5d0kb_, d5d0ke_, d5d0kh_, d5d0kk_
        automated match to d3tgda_
        complexed with zn
      4. 1898590Domain d5d0kj_: 5d0k J: [279803]
        Other proteins in same PDB: d5d0kb_, d5d0ke_, d5d0kh_, d5d0kk_
        automated match to d3tgda_
        complexed with zn
    39. Domain for 5d0m:
  6. 1898601Leishmania major [TaxId:5664] [188133] (1 PDB entry)
  7. 1898604Mouse (Mus musculus) [TaxId:10090] [188773] (1 PDB entry)
  8. 1898607Nematode (Brugia malayi) [TaxId:6279] [226704] (1 PDB entry)
  9. 1898609Nematode (Caenorhabditis elegans) [TaxId:6239] [186897] (1 PDB entry)
  10. 1898611Plasmodium falciparum [TaxId:36329] [187963] (5 PDB entries)
    1. Domain for 2onu:
    2. Domain for 2r0j:
    3. Domains for 3e95:
      1. 1898621Domain d3e95a_: 3e95 A: [174767]
        Other proteins in same PDB: d3e95c_
        automated match to d1j7db_
        complexed with unx
      2. 1898622Domain d3e95b_: 3e95 B: [174768]
        Other proteins in same PDB: d3e95c_
        automated match to d1j7db_
        complexed with unx
    4. Domains for 4jue:
      1. 1898615Domain d4juea_: 4jue A: [224033]
        automated match to d3rczb_
      2. 1898616Domain d4jueb_: 4jue B: [224034]
        automated match to d3rczb_
      3. 1898617Domain d4juec_: 4jue C: [224035]
        automated match to d3rczb_
      4. 1898618Domain d4jued_: 4jue D: [224036]
        automated match to d3rczb_
    5. Domains for 4m1n:
      1. 1898612Domain d4m1na_: 4m1n A: [224810]
        automated match to d2grra_
        complexed with na
      2. 1898613Domain d4m1nb_: 4m1n B: [224811]
        automated match to d2grra_
        complexed with na
      3. 1898614Domain d4m1nc_: 4m1n C: [224812]
        automated match to d2grra_
        complexed with na
  11. 1898623Schizosaccharomyces pombe [TaxId:284812] [196618] (1 PDB entry)
  12. 1898625Zebrafish (Danio rerio) [TaxId:7955] [188346] (1 PDB entry)

More info for Protein automated matches from d.20.1.1: UBC-related

Timeline for Protein automated matches from d.20.1.1: UBC-related: