SCOPe 2.04: Protein: automated matches

Lineage for Protein: automated matches

Root: SCOPe 2.04
Class d: Alpha and beta proteins (a+b) [53931] (380 folds)
Fold d.20: UBC-like [54494] (1 superfamily)
alpha-beta(4)-alpha(3); core: meander beta-sheet plus one helix 2
Superfamily d.20.1: UBC-like [54495] (5 families)
Family d.20.1.1: UBC-related [54496] (7 proteins)
Protein automated matches [190124] (12 species)
not a true protein

Species:

Baker's yeast (Saccharomyces cerevisiae) [TaxId:4932] [189599] (1 PDB entry)
- Domains for 3ong:
  1. Domain d3ongb_: 3ong B: [183192]
    automated match to d1kpsa_
  2. Domain d3ongd_: 3ong D: [183193]
    automated match to d1kpsa_
Baker's yeast (Saccharomyces cerevisiae) [TaxId:559292] [197196] (1 PDB entry)
- Domain for 4jqu:
  - Domain d4jqua_: 4jqu A: [197197]
    automated match to d2ucza_
    complexed with btb, peg
Entamoeba (Entamoeba histolytica) [TaxId:5759] [193761] (1 PDB entry)
- Domain for 4gpr:
  - Domain d4gpra_: 4gpr A: [193762]
    automated match to d2oxqa_
    complexed with co
Fission yeast (Schizosaccharomyces pombe) [TaxId:4896] [189937] (1 PDB entry)
- Domain for 3rcz:
  - Domain d3rczb_: 3rcz B: [184883]
    automated match to d1a3sa_

Human (Homo sapiens) [TaxId:9606] [186848] (29 PDB entries)

Domains for 1x23:
1. Domain d1x23b_: 1x23 B: [121616]
  Other proteins in same PDB: d1x23a1
  automated match to d1ur6a_
2. Domain d1x23c_: 1x23 C: [121617]
  Other proteins in same PDB: d1x23a1
  automated match to d1ur6a_
3. Domain d1x23d_: 1x23 D: [121618]
  Other proteins in same PDB: d1x23a1
  automated match to d1ur6a_
Domains for 2c2v:
1. Domain d2c2vb_: 2c2v B: [129686]
  Other proteins in same PDB: d2c2vc1, d2c2vs1, d2c2vt_, d2c2vu_, d2c2vv_
  automated match to d1j7db_
2. Domain d2c2ve_: 2c2v E: [129688]
  Other proteins in same PDB: d2c2vc1, d2c2vs1, d2c2vt_, d2c2vu_, d2c2vv_
  automated match to d1j7db_
3. Domain d2c2vf_: 2c2v F: [129689]
  Other proteins in same PDB: d2c2vc1, d2c2vs1, d2c2vt_, d2c2vu_, d2c2vv_
  automated match to d1j7da_
4. Domain d2c2vh_: 2c2v H: [129690]
  Other proteins in same PDB: d2c2vc1, d2c2vs1, d2c2vt_, d2c2vu_, d2c2vv_
  automated match to d1j7db_
5. Domain d2c2vi_: 2c2v I: [129691]
  Other proteins in same PDB: d2c2vc1, d2c2vs1, d2c2vt_, d2c2vu_, d2c2vv_
  automated match to d1j7da_
6. Domain d2c2vk_: 2c2v K: [129692]
  Other proteins in same PDB: d2c2vc1, d2c2vs1, d2c2vt_, d2c2vu_, d2c2vv_
  automated match to d1j7db_
7. Domain d2c2vl_: 2c2v L: [129693]
  Other proteins in same PDB: d2c2vc1, d2c2vs1, d2c2vt_, d2c2vu_, d2c2vv_
  automated match to d1j7da_
Domains for 2c4o:
1. Domain d2c4oa_: 2c4o A: [129838]
  automated match to d1ur6a_
  complexed with gol, so4
2. Domain d2c4ob_: 2c4o B: [129839]
  automated match to d1ur6a_
  complexed with gol, so4
3. Domain d2c4oc_: 2c4o C: [129840]
  automated match to d1ur6a_
  complexed with gol, so4
4. Domain d2c4od_: 2c4o D: [129841]
  automated match to d1ur6a_
  complexed with gol, so4
Domains for 2c4p:
1. Domain d2c4pa_: 2c4p A: [163259]
  automated match to d1z2ua1
2. Domain d2c4pb_: 2c4p B: [163260]
  automated match to d1z2ua1
Domains for 2clw:
1. Domain d2clwa_: 2clw A: [130596]
  automated match to d1ur6a_
  complexed with gol, so4
2. Domain d2clwb_: 2clw B: [130597]
  automated match to d1ur6a_
  complexed with gol, so4
3. Domain d2clwc_: 2clw C: [130598]
  automated match to d1ur6a_
  complexed with gol, so4
4. Domain d2clwd_: 2clw D: [130599]
  automated match to d1ur6a_
  complexed with gol, so4
Domains for 2cyx:
1. Domain d2cyxa_: 2cyx A: [163514]
  automated match to d2ucza_
2. Domain d2cyxb_: 2cyx B: [163515]
  automated match to d2ucza_
3. Domain d2cyxc_: 2cyx C: [163516]
  automated match to d2ucza_
Domain for 2fuh:
- Domain d2fuha_: 2fuh A: [134173]
  Other proteins in same PDB: d2fuhb_
  automated match to d3rpga_
Domain for 2kly:
- Domain d2klya_: 2kly A: [242558]
  automated match to d3fsha_
Domain for 2lxp:
- Domain d2lxpa_: 2lxp A: [243027]
  Other proteins in same PDB: d2lxpc_
  automated match to d3fsha_
  complexed with zn
Domains for 2qgx:
1. Domain d2qgxa_: 2qgx A: [167587]
  automated match to d1zuoa1
2. Domain d2qgxb_: 2qgx B: [167588]
  automated match to d1zuoa1
3. Domain d2qgxc_: 2qgx C: [167589]
  automated match to d1zuoa1
4. Domain d2qgxd_: 2qgx D: [167590]
  automated match to d1zuoa1
Domains for 2yho:
1. Domain d2yhob_: 2yho B: [170787]
  automated match to d1z2ua1
  complexed with act, zn
2. Domain d2yhod_: 2yho D: [170788]
  automated match to d1z2ua1
  complexed with act, zn
3. Domain d2yhof_: 2yho F: [170789]
  automated match to d1z2ua1
  complexed with act, zn
4. Domain d2yhoh_: 2yho H: [170790]
  automated match to d1z2ua1
  complexed with act, zn
Domain for 3a33:
- Domain d3a33a_: 3a33 A: [171693]
  Other proteins in same PDB: d3a33b_
  automated match to d1ur6a_
  complexed with gol
Domain for 3h8k:
- Domain d3h8ka_: 3h8k A: [177322]
  automated match to d2ucza_
Domain for 3hct:
- Domain d3hctb_: 3hct B: [177394]
  automated match to d1j7db_
  protein/DNA complex; complexed with zn
Domains for 3hcu:
1. Domain d3hcub_: 3hcu B: [177395]
  automated match to d1j7db_
  protein/DNA complex; complexed with zn
2. Domain d3hcud_: 3hcu D: [177396]
  automated match to d1j7db_
  protein/DNA complex; complexed with zn
Domain for 3l1z:
- Domain d3l1za_: 3l1z A: [247326]
  automated match to d3l1ya_
Domains for 3ptf:
1. Domain d3ptfa_: 3ptf A: [183968]
  Other proteins in same PDB: d3ptfc_, d3ptfd_
  automated match to d1z2ua1
2. Domain d3ptfb_: 3ptf B: [183969]
  Other proteins in same PDB: d3ptfc_, d3ptfd_
  automated match to d1z2ua1
Domain for 3rpg:
- Domain d3rpga_: 3rpg A: [185091]
  automated match to d1x23a1
  complexed with zn
Domain for 3tgd:
- Domain d3tgda_: 3tgd A: [196186]
  automated match to d2clwa_

Domains for 3von:

Domain d3vonc_: 3von C: [250627]
Other proteins in same PDB: d3vona_, d3vonb_, d3vond_, d3vonf_, d3vonh_, d3voni_, d3vonk_, d3vonm_, d3vono_, d3vonp_, d3vonr_, d3vont_, d3vonv_, d3vonw_, d3vony_
automated match to d2c2vb_

Domain d3vone_: 3von E: [250629]
Other proteins in same PDB: d3vona_, d3vonb_, d3vond_, d3vonf_, d3vonh_, d3voni_, d3vonk_, d3vonm_, d3vono_, d3vonp_, d3vonr_, d3vont_, d3vonv_, d3vonw_, d3vony_
automated match to d2c2vb_

Domain d3vong_: 3von G: [250631]
Other proteins in same PDB: d3vona_, d3vonb_, d3vond_, d3vonf_, d3vonh_, d3voni_, d3vonk_, d3vonm_, d3vono_, d3vonp_, d3vonr_, d3vont_, d3vonv_, d3vonw_, d3vony_
automated match to d2c2vb_

Domain d3vonj_: 3von J: [250634]
Other proteins in same PDB: d3vona_, d3vonb_, d3vond_, d3vonf_, d3vonh_, d3voni_, d3vonk_, d3vonm_, d3vono_, d3vonp_, d3vonr_, d3vont_, d3vonv_, d3vonw_, d3vony_
automated match to d2c2vb_

Domain d3vonl_: 3von L: [250636]
Other proteins in same PDB: d3vona_, d3vonb_, d3vond_, d3vonf_, d3vonh_, d3voni_, d3vonk_, d3vonm_, d3vono_, d3vonp_, d3vonr_, d3vont_, d3vonv_, d3vonw_, d3vony_
automated match to d2c2vb_

Domain d3vonn_: 3von N: [250638]
Other proteins in same PDB: d3vona_, d3vonb_, d3vond_, d3vonf_, d3vonh_, d3voni_, d3vonk_, d3vonm_, d3vono_, d3vonp_, d3vonr_, d3vont_, d3vonv_, d3vonw_, d3vony_
automated match to d2c2vb_

Domain d3vonq_: 3von Q: [250641]
Other proteins in same PDB: d3vona_, d3vonb_, d3vond_, d3vonf_, d3vonh_, d3voni_, d3vonk_, d3vonm_, d3vono_, d3vonp_, d3vonr_, d3vont_, d3vonv_, d3vonw_, d3vony_
automated match to d2c2vb_

Domain d3vons_: 3von S: [250643]
Other proteins in same PDB: d3vona_, d3vonb_, d3vond_, d3vonf_, d3vonh_, d3voni_, d3vonk_, d3vonm_, d3vono_, d3vonp_, d3vonr_, d3vont_, d3vonv_, d3vonw_, d3vony_
automated match to d2c2vb_

Domain d3vonu_: 3von U: [250645]
Other proteins in same PDB: d3vona_, d3vonb_, d3vond_, d3vonf_, d3vonh_, d3voni_, d3vonk_, d3vonm_, d3vono_, d3vonp_, d3vonr_, d3vont_, d3vonv_, d3vonw_, d3vony_
automated match to d2c2vb_

Domain d3vonx_: 3von X: [250648]
Other proteins in same PDB: d3vona_, d3vonb_, d3vond_, d3vonf_, d3vonh_, d3voni_, d3vonk_, d3vonm_, d3vono_, d3vonp_, d3vonr_, d3vont_, d3vonv_, d3vonw_, d3vony_
automated match to d2c2vb_

Domain d3vonz_: 3von Z: [250650]
Other proteins in same PDB: d3vona_, d3vonb_, d3vond_, d3vonf_, d3vonh_, d3voni_, d3vonk_, d3vonm_, d3vono_, d3vonp_, d3vonr_, d3vont_, d3vonv_, d3vonw_, d3vony_
automated match to d2c2vb_

Domains for 4ap4:
1. Domain d4ap4b_: 4ap4 B: [194914]
  Other proteins in same PDB: d4ap4c_, d4ap4f_
  automated match to d2c4pb_
  complexed with zn
2. Domain d4ap4e_: 4ap4 E: [201467]
  Other proteins in same PDB: d4ap4c_, d4ap4f_
  automated match to d4ap4b_
  complexed with zn
Domains for 4auq:
1. Domain d4auqa_: 4auq A: [194819]
  Other proteins in same PDB: d4auqc_, d4auqf_
  automated match to d3a33a_
  complexed with zn
2. Domain d4auqd_: 4auq D: [194817]
  Other proteins in same PDB: d4auqc_, d4auqf_
  automated match to d3a33a_
  complexed with zn
Domains for 4ccg:
1. Domain d4ccga_: 4ccg A: [251362]
  automated match to d1yh2a1
  complexed with cl, epe, gol, na, nh4, so4, zn
2. Domain d4ccgb_: 4ccg B: [251363]
  automated match to d1yh2a1
  complexed with cl, epe, gol, na, nh4, so4, zn
Domain for 4lad:
- Domain d4lada_: 4lad A: [224619]
  automated match to d3fsha_
  complexed with oxl, zn
Domain for 4ldt:
- Domain d4ldtc_: 4ldt C: [235347]
  Other proteins in same PDB: d4ldtb_, d4ldtd_
  automated match to d3a33a_
  complexed with edo, mg
Domain for 4nr3:
- Domain d4nr3b_: 4nr3 B: [261521]
  Other proteins in same PDB: d4nr3a_
  automated match to d1x23d_
  mutant
Domain for 4nrg:
- Domain d4nrgb_: 4nrg B: [261523]
  Other proteins in same PDB: d4nrga_
  automated match to d1x23d_
  mutant
Domain for 4nri:
- Domain d4nrib_: 4nri B: [261661]
  Other proteins in same PDB: d4nria_
  automated match to d3tgda_
  complexed with gol; mutant
Domains for 4qpl:
1. Domain d4qplb_: 4qpl B: [260380]
  automated match to d2yhob_
  complexed with v3l, zn
2. Domain d4qpld_: 4qpl D: [260760]
  automated match to d2yhob_
  complexed with v3l, zn

Leishmania major [TaxId:5664] [188133] (1 PDB entry)
- Domains for 1yf9:
  1. Domain d1yf9b_: 1yf9 B: [123055]
    Other proteins in same PDB: d1yf9a1
    automated match to d1yf9a1
    complexed with cl
  2. Domain d1yf9c_: 1yf9 C: [123056]
    Other proteins in same PDB: d1yf9a1
    automated match to d1yf9a1
    complexed with cl
Mouse (Mus musculus) [TaxId:10090] [188773] (1 PDB entry)
- Domains for 3fsh:
  1. Domain d3fsha_: 3fsh A: [176026]
    automated match to d2ucza_
  2. Domain d3fshb_: 3fsh B: [176027]
    automated match to d2ucza_
Nematode (Brugia malayi) [TaxId:6279] [226704] (1 PDB entry)
- Domain for 4l83:
  - Domain d4l83a_: 4l83 A: [224594]
    automated match to d1u9ba_
    complexed with edo
Nematode (Caenorhabditis elegans) [TaxId:6239] [186897] (1 PDB entry)
- Domain for 1z3d:
  - Domain d1z3da_: 1z3d A: [124399]
    automated match to d1q34a_
Plasmodium falciparum [TaxId:36329] [187963] (5 PDB entries)
1. Domain for 2onu:
  - Domain d2onua_: 2onu A: [166804]
    automated match to d1yh6b1
    complexed with pg4
2. Domain for 2r0j:
  - Domain d2r0ja_: 2r0j A: [167908]
    automated match to d1j7db_
3. Domains for 3e95:
  1. Domain d3e95a_: 3e95 A: [174767]
    Other proteins in same PDB: d3e95c_
    automated match to d1j7db_
    complexed with unx
  2. Domain d3e95b_: 3e95 B: [174768]
    Other proteins in same PDB: d3e95c_
    automated match to d1j7db_
    complexed with unx
4. Domains for 4jue:
  1. Domain d4juea_: 4jue A: [224033]
    automated match to d3rczb_
  2. Domain d4jueb_: 4jue B: [224034]
    automated match to d3rczb_
  3. Domain d4juec_: 4jue C: [224035]
    automated match to d3rczb_
  4. Domain d4jued_: 4jue D: [224036]
    automated match to d3rczb_
5. Domains for 4m1n:
  1. Domain d4m1na_: 4m1n A: [224810]
    automated match to d2grra_
    complexed with na
  2. Domain d4m1nb_: 4m1n B: [224811]
    automated match to d2grra_
    complexed with na
  3. Domain d4m1nc_: 4m1n C: [224812]
    automated match to d2grra_
    complexed with na
Schizosaccharomyces pombe [TaxId:284812] [196618] (1 PDB entry)
- Domain for 4ii2:
  - Domain d4ii2c_: 4ii2 C: [196619]
    Other proteins in same PDB: d4ii2b_
    automated match to d1z2ua1
    complexed with atp, edo, mg, pg0, so4
Zebrafish (Danio rerio) [TaxId:7955] [188346] (1 PDB entry)
- Domains for 2oxq:
  1. Domain d2oxqa_: 2oxq A: [166912]
    Other proteins in same PDB: d2oxqc_, d2oxqd_
    automated match to d1ur6a_
    complexed with cl
  2. Domain d2oxqb_: 2oxq B: [166913]
    Other proteins in same PDB: d2oxqc_, d2oxqd_
    automated match to d1ur6a_
    complexed with cl

More info for Protein automated matches from d.20.1.1: UBC-related

Timeline for Protein automated matches from d.20.1.1: UBC-related:

Protein automated matches from d.20.1.1: UBC-related first appeared in SCOPe 2.01
Protein automated matches from d.20.1.1: UBC-related appears in SCOPe 2.03
Protein automated matches from d.20.1.1: UBC-related appears in SCOPe 2.05
Protein automated matches from d.20.1.1: UBC-related appears in the current release, SCOPe 2.08