Lineage for Protein: automated matches

  1. Root: SCOPe 2.03
  2. 1396887Class d: Alpha and beta proteins (a+b) [53931] (376 folds)
  3. 1406945Fold d.20: UBC-like [54494] (1 superfamily)
    alpha-beta(4)-alpha(3); core: meander beta-sheet plus one helix 2
  4. 1406946Superfamily d.20.1: UBC-like [54495] (5 families) (S)
  5. 1406947Family d.20.1.1: UBC-related [54496] (7 proteins)
  6. 1407111Protein automated matches [190124] (12 species)
    not a true protein

Species:

  1. 1407112Baker's yeast (Saccharomyces cerevisiae) [TaxId:4932] [189599] (1 PDB entry)
  2. 1407115Baker's yeast (Saccharomyces cerevisiae) [TaxId:559292] [197196] (1 PDB entry)
  3. 1407117Entamoeba (Entamoeba histolytica) [TaxId:5759] [193761] (1 PDB entry)
  4. 1407119Fission yeast (Schizosaccharomyces pombe) [TaxId:4896] [189937] (1 PDB entry)
  5. 1407121Human (Homo sapiens) [TaxId:9606] [186848] (19 PDB entries)
    1. Domains for 1x23:
      1. 1407125Domain d1x23b_: 1x23 B: [121616]
        Other proteins in same PDB: d1x23a1
        automated match to d1ur6a_
      2. 1407126Domain d1x23c_: 1x23 C: [121617]
        Other proteins in same PDB: d1x23a1
        automated match to d1ur6a_
      3. 1407127Domain d1x23d_: 1x23 D: [121618]
        Other proteins in same PDB: d1x23a1
        automated match to d1ur6a_
    2. Domains for 2c2v:
      1. 1407161Domain d2c2vb_: 2c2v B: [129686]
        Other proteins in same PDB: d2c2vc1, d2c2vs1, d2c2vt_, d2c2vu_, d2c2vv_
        automated match to d1j7db_
      2. 1407162Domain d2c2ve_: 2c2v E: [129688]
        Other proteins in same PDB: d2c2vc1, d2c2vs1, d2c2vt_, d2c2vu_, d2c2vv_
        automated match to d1j7db_
      3. 1407163Domain d2c2vf_: 2c2v F: [129689]
        Other proteins in same PDB: d2c2vc1, d2c2vs1, d2c2vt_, d2c2vu_, d2c2vv_
        automated match to d1j7da_
      4. 1407164Domain d2c2vh_: 2c2v H: [129690]
        Other proteins in same PDB: d2c2vc1, d2c2vs1, d2c2vt_, d2c2vu_, d2c2vv_
        automated match to d1j7db_
      5. 1407165Domain d2c2vi_: 2c2v I: [129691]
        Other proteins in same PDB: d2c2vc1, d2c2vs1, d2c2vt_, d2c2vu_, d2c2vv_
        automated match to d1j7da_
      6. 1407166Domain d2c2vk_: 2c2v K: [129692]
        Other proteins in same PDB: d2c2vc1, d2c2vs1, d2c2vt_, d2c2vu_, d2c2vv_
        automated match to d1j7db_
      7. 1407167Domain d2c2vl_: 2c2v L: [129693]
        Other proteins in same PDB: d2c2vc1, d2c2vs1, d2c2vt_, d2c2vu_, d2c2vv_
        automated match to d1j7da_
    3. Domains for 2c4o:
      1. 1407136Domain d2c4oa_: 2c4o A: [129838]
        automated match to d1ur6a_
        complexed with gol, so4
      2. 1407137Domain d2c4ob_: 2c4o B: [129839]
        automated match to d1ur6a_
        complexed with gol, so4
      3. 1407138Domain d2c4oc_: 2c4o C: [129840]
        automated match to d1ur6a_
        complexed with gol, so4
      4. 1407139Domain d2c4od_: 2c4o D: [129841]
        automated match to d1ur6a_
        complexed with gol, so4
    4. Domains for 2c4p:
      1. 1407154Domain d2c4pa_: 2c4p A: [163259]
        automated match to d1z2ua1
      2. 1407155Domain d2c4pb_: 2c4p B: [163260]
        automated match to d1z2ua1
    5. Domains for 2clw:
      1. 1407132Domain d2clwa_: 2clw A: [130596]
        automated match to d1ur6a_
        complexed with gol, so4
      2. 1407133Domain d2clwb_: 2clw B: [130597]
        automated match to d1ur6a_
        complexed with gol, so4
      3. 1407134Domain d2clwc_: 2clw C: [130598]
        automated match to d1ur6a_
        complexed with gol, so4
      4. 1407135Domain d2clwd_: 2clw D: [130599]
        automated match to d1ur6a_
        complexed with gol, so4
    6. Domains for 2cyx:
      1. 1407156Domain d2cyxa_: 2cyx A: [163514]
        automated match to d2ucza_
      2. 1407157Domain d2cyxb_: 2cyx B: [163515]
        automated match to d2ucza_
      3. 1407158Domain d2cyxc_: 2cyx C: [163516]
        automated match to d2ucza_
    7. Domains for 2qgx:
      1. 1407145Domain d2qgxa_: 2qgx A: [167587]
        automated match to d1zuoa1
      2. 1407146Domain d2qgxb_: 2qgx B: [167588]
        automated match to d1zuoa1
      3. 1407147Domain d2qgxc_: 2qgx C: [167589]
        automated match to d1zuoa1
      4. 1407148Domain d2qgxd_: 2qgx D: [167590]
        automated match to d1zuoa1
    8. Domains for 2yho:
      1. 1407128Domain d2yhob_: 2yho B: [170787]
        automated match to d1z2ua1
        complexed with act, zn
      2. 1407129Domain d2yhod_: 2yho D: [170788]
        automated match to d1z2ua1
        complexed with act, zn
      3. 1407130Domain d2yhof_: 2yho F: [170789]
        automated match to d1z2ua1
        complexed with act, zn
      4. 1407131Domain d2yhoh_: 2yho H: [170790]
        automated match to d1z2ua1
        complexed with act, zn
    9. Domain for 3a33:
    10. Domain for 3h8k:
    11. Domain for 3hct:
    12. Domains for 3hcu:
      1. 1407159Domain d3hcub_: 3hcu B: [177395]
        automated match to d1j7db_
        protein/DNA complex; complexed with zn
      2. 1407160Domain d3hcud_: 3hcu D: [177396]
        automated match to d1j7db_
        protein/DNA complex; complexed with zn
    13. Domains for 3ptf:
      1. 1407151Domain d3ptfa_: 3ptf A: [183968]
        Other proteins in same PDB: d3ptfc_, d3ptfd_
        automated match to d1z2ua1
      2. 1407152Domain d3ptfb_: 3ptf B: [183969]
        Other proteins in same PDB: d3ptfc_, d3ptfd_
        automated match to d1z2ua1
    14. Domain for 3rpg:
    15. Domain for 3tgd:
    16. Domains for 4ap4:
      1. 1407141Domain d4ap4b_: 4ap4 B: [194914]
        Other proteins in same PDB: d4ap4c_, d4ap4f_
        automated match to d2c4pb_
        complexed with zn
      2. 1407142Domain d4ap4e_: 4ap4 E: [201467]
        Other proteins in same PDB: d4ap4c_, d4ap4f_
        automated match to d4ap4b_
        complexed with zn
    17. Domains for 4auq:
      1. 1407143Domain d4auqa_: 4auq A: [194819]
        Other proteins in same PDB: d4auqc_, d4auqf_
        automated match to d3a33a_
        complexed with zn
      2. 1407144Domain d4auqd_: 4auq D: [194817]
        Other proteins in same PDB: d4auqc_, d4auqf_
        automated match to d3a33a_
        complexed with zn
    18. Domain for 4lad:
    19. Domain for 4ldt:
  6. 1407168Leishmania major [TaxId:5664] [188133] (1 PDB entry)
  7. 1407171Mouse (Mus musculus) [TaxId:10090] [188773] (1 PDB entry)
  8. 1407174Nematode (Brugia malayi) [TaxId:6279] [226704] (1 PDB entry)
  9. 1407176Nematode (Caenorhabditis elegans) [TaxId:6239] [186897] (1 PDB entry)
  10. 1407178Plasmodium falciparum [TaxId:36329] [187963] (5 PDB entries)
    1. Domain for 2onu:
    2. Domain for 2r0j:
    3. Domains for 3e95:
      1. 1407188Domain d3e95a_: 3e95 A: [174767]
        Other proteins in same PDB: d3e95c_
        automated match to d1j7db_
        complexed with unx
      2. 1407189Domain d3e95b_: 3e95 B: [174768]
        Other proteins in same PDB: d3e95c_
        automated match to d1j7db_
        complexed with unx
    4. Domains for 4jue:
      1. 1407182Domain d4juea_: 4jue A: [224033]
        automated match to d3rczb_
      2. 1407183Domain d4jueb_: 4jue B: [224034]
        automated match to d3rczb_
      3. 1407184Domain d4juec_: 4jue C: [224035]
        automated match to d3rczb_
      4. 1407185Domain d4jued_: 4jue D: [224036]
        automated match to d3rczb_
    5. Domains for 4m1n:
      1. 1407179Domain d4m1na_: 4m1n A: [224810]
        automated match to d2grra_
        complexed with na
      2. 1407180Domain d4m1nb_: 4m1n B: [224811]
        automated match to d2grra_
        complexed with na
      3. 1407181Domain d4m1nc_: 4m1n C: [224812]
        automated match to d2grra_
        complexed with na
  11. 1407190Schizosaccharomyces pombe [TaxId:284812] [196618] (1 PDB entry)
  12. 1407192Zebrafish (Danio rerio) [TaxId:7955] [188346] (1 PDB entry)

More info for Protein automated matches from d.20.1.1: UBC-related

Timeline for Protein automated matches from d.20.1.1: UBC-related: